NO20G00630.1, NO20G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00630.1
Unique NameNO20G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2041
Alignment locationchr20:211381..214100 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:211381..214100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00630.1 vs.
Match: EWM22174.1 (carbonate dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 480.3 bits (1235), Expect = 4.400e-132
Identity = 221/311 (71.06%), Postives = 256/311 (82.32%), Query Frame = 0 
Query:    1 MKITMSSAACLALLMAPLALVRAGTSMEDLEKMESWSYVPNENSNACVGADAKSWGCCGKPEDGKERCGPNNWIHINETTTVRCANTPGNQQSPINFQTVGKFRDIVSLKKEDAAMTFSGHKCEAFVEFKEGTWEVVTPDDCGFKMTIGGVDYKLLQFHFHNAEHTVNYAYMPLEVHLVHQSVEDKDQILVLSTFFAPGATSEFFENLQKGQENANPDKPDLATKNMINAYDVLPKDMAFWHYVGSLTTPPCQTREGASVQWYVFKTPNTLSYEQLYFFTSYFRDLPLANNGRISRNVQDVLEGTTIYSFP 312
            MKI  +SAACLAL+MAPL+L++A TSMEDLEKMESWSY+ N N   C  ADAKS+GCCGKPEDGKERCGP+NWIHINETTT  CAN  GNQQSPIN QTVG    +  + K D  M+FSGH CEAF+EFKEGTWEVV PD C F+  IGG DYKLLQFHFHNAEH++N++YMPLEVHLVH  V+    I VLS F APGA+S FFE LQ  +  A+PD PDLATKN INAYD+LP+D +FWHYVGSLTTPPCQT +G SV WY+FKTPNTLSY QLY+FTSYFRDLPL++NGRISR+ QD++EGTT+++FP
Sbjct:   28 MKIFTTSAACLALMMAPLSLIKAATSMEDLEKMESWSYIHNVNYAPCDDADAKSFGCCGKPEDGKERCGPDNWIHINETTTTTCANVKGNQQSPINIQTVGT--TLTPMDKADGTMSFSGHTCEAFIEFKEGTWEVVIPDTCTFQAKIGGTDYKLLQFHFHNAEHSINFSYMPLEVHLVHAKVDSPKDIAVLSVFLAPGASSTFFETLQANEAQADPDHPDLATKNKINAYDILPEDHSFWHYVGSLTTPPCQTEKGQSVNWYLFKTPNTLSYSQLYYFTSYFRDLPLSDNGRISRDTQDLVEGTTLFTFP 336
The following BLAST results are available for this feature:
BLAST of NO20G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22174.14.400e-13271.06carbonate dehydratase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00630NO20G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00630.1NO20G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00630.1.cds1NO20G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00630.1.cds2NO20G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00630.1.cds3NO20G00630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00630.1.cds4NO20G00630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00630.1 ID=NO20G00630.1|Name=NO20G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp
GAAGACCTTCATGTCACTTTTATGGCGATGGGGCAATTGCACTTATACAA
TACTCCTGATCTTGCAAGGACTTCATTCCTTCTTCCATGAAAATTGTAGT
TTTTTATTTCTGTTTCGCTTGTACAGTTGTTTGTTTCTTGTGTACTTCGT
CTGGCTGTCCTTGCTGCACGTCTTTGACCCATTGTCCCGTGTCAGCCTCA
CACCTCGTTGCGTGTATTCTTCTTGATAGCTTCATCTCACGCTCCACTCA
CTATCTTTTACTTCGAGCGCCTGTTGAATGCGAGCGGAGCTTTGCCGGGG
TACCCACACCGATCTATACATGGCTTGACAACAGCACACGTCCAGCTAGC
CTGTCCTGTTCTCTCTCTCAACCACACCTTCTTCCTTGTCCCTCTCTGCA
AACACATGCAGACTCAGCCCTAAAACCCGCCTTTAGACAAGATGAAGATC
ACCATGTCCTCCGCCGCCTGCCTGGCCTTGCTGATGGCACCCTTGGCCCT
GGTCCGCGCCGGTACTTCCATGGAAGACCTTGAGAAGATGGAGTCCTGGA
GCTACGTCCCTAACGAGAATTCCAACGCATGTGTCGGTGCTGATGCGAAG
TCCTGGGGATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCGTTGCGGCCC
CAACAACTGGATCCACATCAACGAGACCACCACCGTCAGGTGTGCCAACA
CGCCGGGCAATCAGCAGAGCCCCATTAACTTCCAGACTGTCGGCAAATTC
CGTGACATCGTGTCTTTGAAGAAGGAGGATGCCGCCATGACCTTCTCGGG
CCACAAATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGTGGGAGGTTG
TCACCCCCGATGACTGCGGCTTCAAGATGACAATTGGAGGCGTCGACTAC
AAGCTCCTGCAGTTCCACTTCCATAACGCCGAGCACACGGTCAACTATGC
CTACATGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGTCGAGGACAAAG
ACCAAATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCGACCTCCGAG
TTCTTCGAGAACCTCCAGAAGGGCCAGGAGAACGCCAACCCCGACAAGCC
CGACCTGGCCACCAAAAACATGATCAACGCCTATGATGTCCTCCCCAAAG
ACATGGCATTCTGGCACTACGTCGGATCCCTCACCACCCCTCCCTGCCAG
ACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTCTTCAAGACGCCCAACAC
CCTCTCCTACGAGCAGCTCTACTTCTTCACTTCCTACTTCCGTGACCTGC
CCCTGGCCAACAACGGCCGTATCTCCCGTAATGTCCAGGACGTCTTGGAG
GGCACCACCATCTACTCCTTCCCTTAAACCGTCGGTTGGTCGGAGAAGAA
GGAAGGATGGAGGGAAGGAGCGAAGGAAGGTCAATGTACCGATAGAGTCT
TTCTCACTTATCTGAAATAAGGGAGGAGGAGGACGGGATAATCAAAAGCA
ATCAGCAGGGCAATTATATAATTTGGAGAAAAGCAACATCCAACTGAGCG
TCTCCTTGCGTGTGTTTCAGCCTGTGTCGGATGTCCGGCGCGGGAGTGAT
GGCGCTTGCTTGTCTTGATTTGGATGCGTGTGAATGTGCTCTGTGTAGGT
GATAGTTCAGGCAGGGGTTATATTTGATAGTGACGCTCTGTGTAAGTGAT
AGAATTGCAGAGGCTATATATGGTGGGGAACGCCGAGAAGTGTATGCGGG
ATAAGCAGTGGCTGTTGTCTGTCTCAGATACAGACCATATCCCCTCTCAT
TTATTTTTTAAACAAGGACCTTTTTCTCAAAGAAATAGGAGGGGAAAGAA
AAGAGTACTGCCTGCTTTAAATAAAAAAGTGCAACCCTGTCCTTGGGAAA
GAAACTTAGCAAGAGAGAAAGCGCAAAAAACACATGAACAGCCCTGCGAC
AAGGACGTGATTTTATCGAGTCCTTTGAACAAAATGCATTAAAAAAAAAG
CCGAGACGCGAACCGAGTAACAACCCACCTAATGACAACTT
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protein sequence of NO20G00630.1

>NO20G00630.1-protein ID=NO20G00630.1-protein|Name=NO20G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MKITMSSAACLALLMAPLALVRAGTSMEDLEKMESWSYVPNENSNACVGA
DAKSWGCCGKPEDGKERCGPNNWIHINETTTVRCANTPGNQQSPINFQTV
GKFRDIVSLKKEDAAMTFSGHKCEAFVEFKEGTWEVVTPDDCGFKMTIGG
VDYKLLQFHFHNAEHTVNYAYMPLEVHLVHQSVEDKDQILVLSTFFAPGA
TSEFFENLQKGQENANPDKPDLATKNMINAYDVLPKDMAFWHYVGSLTTP
PCQTREGASVQWYVFKTPNTLSYEQLYFFTSYFRDLPLANNGRISRNVQD
VLEGTTIYSFP*
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mRNA from alignment at chr20:211381..214100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00630.1 ID=NO20G00630.1|Name=NO20G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2720bp|location=Sequence derived from alignment at chr20:211381..214100+ (Nannochloropsis oceanica)
GAAGACCTTCATGTCACTTTTATGGCGATGGGGCAATTGCACTTATACAA
TACTCCTGATCTTGCAAGGACTTCATTCCTTCTTCCATGAAAATTGTAGT
TTTTTATTTCTGTTTCGCTTGTACAGTTGTTTGTTTCTTGTGTACTTCGT
CTGGCTGTCCTTGCTGCACGTCTTTGACCCATTGTCCCGTGTCAGCCTCA
CACCTCGTTGCGTGTATTCTTCTTGATAGCTTCATCTCACGCTCCACTCA
CTATCTTTTACTTCGAGCGCCTGTTGAATGCGAGCGGAGCTTTGCCGGGG
TACCCACACCGATCTATACATGGCTTGACAACAGCACACGTCCAGCTAGC
CTGTCCTGTTCTCTCTCTCAACCACACCTTCTTCCTTGTCCCTCTCTGCA
AACACATGCAGACTCAGCCCTAAAACCCGCCTTTAGACAAGATGAAGATC
ACCATGTCCTCCGCCGCCTGCCTGGCCTTGCTGATGGCACCCTTGGCCCT
GGTCCGCGCCGGTACTTCCATGGAAGACCTTGAGAAGATGGAGTCCTGGA
GCTACGTCCCTGTAAGTACTTACTCGCCTCGAGTAATGAGGTTGGTTGGT
CGGGTTTGGACGTGGTCGTGTTCGTGTTCATTGCGCCGATCTTGTGTCTT
TTCCCCGCGGGGGGCGCAACGACACAGAACAATATCCTCCTACTCCACAT
AGTGCCTCTCCTCTTTCGTCCGTCCATCGTATTTGTTAGCATCTTGTCAC
ATGAGAGTGAGGTCTTCTTCGCTCTGTTTCTCTCCATTGCCTGTCTGTAC
ATACTGCTATTTACCTCCCCTCATCATGCAACCTCATCTCACCTCCCCTC
CCTCCCTCCCTACATCTATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CTTTCTTTCCTTCCTATCTTTCACCAGAACGAGAATTCCAACGCATGTGT
CGGTGCTGATGCGAAGTCCTGGGGATGCTGCGGAAAGCCGGAGGACGGCA
AGGAGCGTTGCGGCCCCAACAACTGGATCCACATCAACGAGACCACCACC
GTCAGGTGTGCCAACACGCCGGGCAATCAGCAGAGGTATGCACATGCACG
CATGCATCAGCACGCCTTCTATTCTCGACGTCTTTTTGTCTCCTTTCCCC
TCTTCCCCTCTCTTACTTATTTCCCGTCTCCTCTCTCTCCTCACCTTTCC
TACACGCAAGCGTTAGCTCACCTTCCTTCCCTTTTCTCCCTCCCCATTTC
TCCCACCGTCGCACTCCCTGTGTCCTCCAGCCCCATTAACTTCCAGACTG
TCGGCAAATTCCGTGACATCGTGTCTTTGAAGAAGGAGGATGCCGCCATG
ACCTTCTCGGGCCACAAATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGAC
GTGGGAGGTTGTCACCCCCGATGACTGCGGCTTCAAGATGACAATTGGAG
GCGTCGACTACAAGCTCCTGCAGTTCCACTTCCATAACGCCGAGCACACG
GTCAACTATGCCTACATGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGT
CGAGGACAAAGACCAAATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCG
CGACCTCCGAGTTCTTCGAGAACCTCCAGAAGGGCCAGGAGAACGCCAAC
CCCGACAAGCCCGACCTGGCCACCAAAAACATGATCAACGCCTATGATGT
CCTCCCCAAAGACATGGCATTCTGGCACTACGTCGGATCCCTCACCACCC
CTCCCTGCCAGACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTTCCCTCC
TTCCCTCCCTACTCCTTACCCCCTGGTCCCTTTCCCTGAGTCGACACCAC
GCACCAGTGTATAATATAATAATCCTTTCCATTCCCTCTTCCTCCCCCCC
TCCAGGTACGTCTTCAAGACGCCCAACACCCTCTCCTACGAGCAGCTCTA
CTTCTTCACTTCCTACTTCCGTGACCTGCCCCTGGCCAACAACGGCCGTA
TCTCCCGTAATGTCCAGGACGTCTTGGAGGGCACCACCATCTACTCCTTC
CCTTAAACCGTCGGTTGGTCGGAGAAGAAGGAAGGATGGAGGGAAGGAGC
GAAGGAAGGTCAATGTACCGATAGAGTCTTTCTCACTTATCTGAAATAAG
GGAGGAGGAGGACGGGATAATCAAAAGCAATCAGCAGGGCAATTATATAA
TTTGGAGAAAAGCAACATCCAACTGAGCGTCTCCTTGCGTGTGTTTCAGC
CTGTGTCGGATGTCCGGCGCGGGAGTGATGGCGCTTGCTTGTCTTGATTT
GGATGCGTGTGAATGTGCTCTGTGTAGGTGATAGTTCAGGCAGGGGTTAT
ATTTGATAGTGACGCTCTGTGTAAGTGATAGAATTGCAGAGGCTATATAT
GGTGGGGAACGCCGAGAAGTGTATGCGGGATAAGCAGTGGCTGTTGTCTG
TCTCAGATACAGACCATATCCCCTCTCATTTATTTTTTAAACAAGGACCT
TTTTCTCAAAGAAATAGGAGGGGAAAGAAAAGAGTACTGCCTGCTTTAAA
TAAAAAAGTGCAACCCTGTCCTTGGGAAAGAAACTTAGCAAGAGAGAAAG
CGCAAAAAACACATGAACAGCCCTGCGACAAGGACGTGATTTTATCGAGT
CCTTTGAACAAAATGCATTAAAAAAAAAGCCGAGACGCGAACCGAGTAAC
AACCCACCTAATGACAACTT
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Coding sequence (CDS) from alignment at chr20:211381..214100+

>NO20G00630.1 ID=NO20G00630.1|Name=NO20G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr20:211381..214100+ (Nannochloropsis oceanica)
ATGAAGATCACCATGTCCTCCGCCGCCTGCCTGGCCTTGCTGATGGCACC
CTTGGCCCTGGTCCGCGCCGGTACTTCCATGGAAGACCTTGAGAAGATGG
AGTCCTGGAGCTACGTCCCTAACGAGAATTCCAACGCATGTGTCGGTGCT
GATGCGAAGTCCTGGGGATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCG
TTGCGGCCCCAACAACTGGATCCACATCAACGAGACCACCACCGTCAGGT
GTGCCAACACGCCGGGCAATCAGCAGAGCCCCATTAACTTCCAGACTGTC
GGCAAATTCCGTGACATCGTGTCTTTGAAGAAGGAGGATGCCGCCATGAC
CTTCTCGGGCCACAAATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGT
GGGAGGTTGTCACCCCCGATGACTGCGGCTTCAAGATGACAATTGGAGGC
GTCGACTACAAGCTCCTGCAGTTCCACTTCCATAACGCCGAGCACACGGT
CAACTATGCCTACATGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGTCG
AGGACAAAGACCAAATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCG
ACCTCCGAGTTCTTCGAGAACCTCCAGAAGGGCCAGGAGAACGCCAACCC
CGACAAGCCCGACCTGGCCACCAAAAACATGATCAACGCCTATGATGTCC
TCCCCAAAGACATGGCATTCTGGCACTACGTCGGATCCCTCACCACCCCT
CCCTGCCAGACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTCTTCAAGAC
GCCCAACACCCTCTCCTACGAGCAGCTCTACTTCTTCACTTCCTACTTCC
GTGACCTGCCCCTGGCCAACAACGGCCGTATCTCCCGTAATGTCCAGGAC
GTCTTGGAGGGCACCACCATCTACTCCTTCCCTTAA
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Synonyms
Publications