NO20G00280.1, NO20G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00280.1
Unique NameNO20G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr20:96420..96908 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:96420..96908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00280NO20G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00280.1NO20G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00280.1.cds1NO20G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00280.1 ID=NO20G00280.1|Name=NO20G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAACGAACATGATACAAAAGATGGCTCG
ATTTTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
back to top

protein sequence of NO20G00280.1

>NO20G00280.1-protein ID=NO20G00280.1-protein|Name=NO20G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAMPNLTLQGKKVQLKEQREEEIIRDNIKLLDKIWTISQAGNEHDTKDGS
ILHSSLITSMTCAPVSFALLHRSKHERIRRQADLKVVRENKALLARLERA
RPFVDVVKMEEEYMHRTAQRAPHSRKSMRAKVQAQLEDEEKEEGRKGVEK
RMAVEEATAVVR*
back to top

mRNA from alignment at chr20:96420..96908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00280.1 ID=NO20G00280.1|Name=NO20G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp|location=Sequence derived from alignment at chr20:96420..96908+ (Nannochloropsis oceanica)
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAACGAACATGATACAAAAGATGGCTCG
ATTTTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
back to top

Coding sequence (CDS) from alignment at chr20:96420..96908+

>NO20G00280.1 ID=NO20G00280.1|Name=NO20G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr20:96420..96908+ (Nannochloropsis oceanica)
ATGGCCATGCCCAACTTGACCTTGCAAGGCAAGAAAGTACAGCTCAAAGA
GCAACGGGAAGAGGAGATCATCCGTGACAACATAAAGCTCTTGGACAAGA
TTTGGACTATTTCGCAGGCTGGCAACGAACATGATACAAAAGATGGCTCG
ATTTTGCACTCCTCCCTTATAACGAGCATGACATGCGCTCCAGTCTCATT
TGCCCTGCTTCACCGGTCCAAGCATGAACGCATCCGCCGGCAAGCCGACC
TGAAAGTTGTGCGTGAGAACAAAGCCTTGCTTGCCCGCCTGGAAAGAGCA
AGACCCTTCGTCGATGTAGTCAAGATGGAAGAAGAATACATGCACCGAAC
TGCGCAACGTGCGCCTCATTCAAGGAAATCCATGCGGGCCAAGGTACAGG
CGCAGCTTGAGGACGAGGAGAAGGAGGAGGGACGGAAGGGAGTGGAGAAG
AGGATGGCTGTGGAAGAGGCCACAGCTGTGGTCCGATAG
back to top
Synonyms
Publications