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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:89197..93230 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00260.1 vs.
Match: EWM22209.1 (4-hydroxyphenylpyruvate dioxygenase [Nannochloropsis gaditana]) HSP 1 Score: 694.1 bits (1790), Expect = 2.800e-196 Identity = 346/442 (78.28%), Postives = 381/442 (86.20%), Query Frame = 0
Query: 13 ISQLVGHKNFVRVNPMSDQFEIKRFHHLELYCGDASNTSRRFAWGLGLAQVAKSDHSTGNPLYASYVLQSQELVFVFTAPYA--PPSSSFPS--SSPRHAVPITNIADAPSSSSSIPHPAFSPTDAAGFFTRHGLAIKAVGIEVEDAHVAYEKCVAHGGKGVLPAQLLKDVETGQSMLMSEVMAYPEEEGEVVLRFVSGGFKGPFLPNYQSTPSPPLSYGLQRIDHVVSNVRHLLPVANHLMGMTGMHEFAEFTAADVGTVDSGLNSLVLASNNEKVLMPVNEPTFGTKRKSQIQTYLEQNQGPGVQHIALKTDDIFATMEELKRRTHVGGFDFMPKASPEYYRGLPQKIGAGVLTEEQLTRVEELGLLVDKDDQGVLLQIFTRPVGDRPTLFLEIIQRLGCTHDKAGKALAEQAPGCGGFGKGNFSELFKSIEEYEKTLNV 451
+S+LVGHK FVR NP+SD+FE+KRFHHLE YCGDA+NTSRRF+WGLGL+QVAKSD+STGNPLYASYVLQSQELVFVFTAPYA PPSSS + S P H IA+A S + PHPAF + A GFF RHGLA++A+GIEV DA AYE C+AHGGKGVL Q+LKD TGQ ++EV+AYP + EVVLRFVSG F GPFLPNYQ TP PPLSYGLQRIDHVVSNV LLPV NHLM MTG+HE+AEFT+ DVGTVDSGLNSLVLASNNE+VL+PVNEPTFGTKRKSQIQTYLEQNQG GVQHIALKTD+IFATM ELK+RTH+GGFDFMPKASPEYY+ LP KIG GVLT+E+L VEELGLLVDKDDQGVLLQ+FTRPVGDRPTLFLEIIQR+GCT DK GK L EQAPGCGGFGKGNFSELFKSIEEYEKTLNV
Sbjct: 22 VSELVGHKRFVRHNPLSDRFEMKRFHHLEFYCGDATNTSRRFSWGLGLSQVAKSDNSTGNPLYASYVLQSQELVFVFTAPYASTPPSSSVAAALSQPSH-----RIAEASPSLAPSPHPAFDSSMAMGFFGRHGLAVRAIGIEVHDASQAYEACLAHGGKGVLAPQILKDTATGQVKWIAEVLAYPGNDAEVVLRFVSGDFDGPFLPNYQETPIPPLSYGLQRIDHVVSNVPQLLPVVNHLMEMTGLHEYAEFTSTDVGTVDSGLNSLVLASNNERVLLPVNEPTFGTKRKSQIQTYLEQNQGAGVQHIALKTDNIFATMRELKKRTHLGGFDFMPKASPEYYQSLPAKIGPGVLTDEELACVEELGLLVDKDDQGVLLQVFTRPVGDRPTLFLEIIQRVGCTVDKEGKRLPEQAPGCGGFGKGNFSELFKSIEEYEKTLNV 458
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G00260.1 ID=NO20G00260.1|Name=NO20G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp
CAGACACCAAACGCACACAGACGCCCAGCAAAGGCATTTCACACCAGTTA
TGCCAGGGACACTGACCACCACCTCGCCAGCGATGATCAGCCAGCTTGTC
GGCCACAAGAACTTTGTGCGGGTGAACCCCATGAGCGACCAGTTTGAGAT
CAAACGCTTTCACCATCTTGAGCTATACTGTGGCGACGCCTCCAACACGT
CCCGTCGTTTTGCATGGGGCTTGGGCCTGGCTCAAGTGGCCAAATCGGAC
CATTCAACCGGCAATCCGCTCTACGCCTCCTACGTCCTTCAGAGCCAAGA
ACTCGTCTTTGTCTTCACAGCGCCTTATGCACCTCCTTCTTCCTCCTTCC
CTTCCTCCTCTCCGCGACATGCCGTGCCCATCACCAATATTGCCGATGCC
CCCTCCTCCTCCTCCTCCATCCCTCACCCTGCTTTCTCCCCTACCGACGC
CGCCGGTTTCTTTACTCGCCATGGGCTGGCCATTAAAGCGGTCGGAATTG
AGGTAGAGGATGCCCACGTAGCTTACGAAAAGTGTGTGGCGCATGGAGGG
AAGGGTGTGCTGCCTGCACAGCTGCTGAAGGACGTGGAAACAGGGCAGTC
AATGCTGATGTCGGAGGTCATGGCATATCCCGAGGAGGAAGGGGAGGTGG
TGCTGCGCTTTGTGAGCGGGGGGTTCAAAGGCCCCTTCCTGCCCAACTAC
CAATCCACGCCGTCCCCGCCTCTTTCTTACGGGCTGCAGCGAATCGACCA
CGTCGTTTCGAACGTGCGGCATCTGCTGCCGGTTGCTAATCACTTGATGG
GCATGACGGGGATGCATGAATTCGCGGAGTTTACGGCCGCGGACGTGGGC
ACCGTCGACAGCGGCTTGAACAGCCTCGTGCTGGCGTCTAACAACGAGAA
GGTCTTAATGCCCGTCAATGAACCTACCTTTGGCACTAAGCGCAAGAGTC
AGATCCAAACCTACCTAGAGCAAAATCAGGGGCCAGGGGTCCAACACATC
GCGCTCAAGACAGACGATATTTTCGCCACCATGGAGGAGCTGAAAAGAAG
GACGCACGTAGGAGGCTTCGACTTCATGCCCAAGGCCTCTCCCGAGTATT
ATCGTGGCCTTCCTCAGAAGATAGGCGCTGGAGTGTTGACTGAAGAGCAG
CTGACGCGGGTGGAGGAGCTGGGGCTGCTGGTGGACAAAGATGATCAGGG
GGTTTTGCTGCAGATCTTCACCCGCCCCGTCGGAGATCGGCCCACCCTGT
TCCTCGAAATCATCCAACGCCTCGGCTGCACGCACGACAAGGCGGGAAAG
GCACTTGCGGAGCAGGCCCCGGGATGTGGGGGGTTTGGAAAGGGAAATTT
CAGCGAGCTGTTCAAGTCGATCGAGGAGTATGAGAAAACGCTTAATGTAT
AGAACGTATTCCATCTGGGGAGAAGAAGGGGAGGGAGGGAAAGGGAGAGG
GAAGGGAAATGGCAGGGAGGGAGGGTGAGAAAAGAGGAATGATGACTGCA
GGAGAGAGAGGCTGGGTGTGGAGGAGGGAAGGAGGGATGAATGGAGGGAA
GGGGGGAGGAGGAGATGGTCGGACGGGTACGCGGACGAGGCCCGTACCAG
GAGAAGAGGGAAAGCGGGATAAATATGTGCTGGGGATGGTAGGAAGGACC
AGGGCAAGCTGATAGATACAAGGGCAGGAACAACATCATGTACAGGAGCA
GCAGCAGCAGGAAGAGGAGGAAGAGGAGGAGGACCACAAAGAGGAGTAGC
ATTGCCAGCAGCACTAGACCAGTGGTGGGAAAAGCGGACGGTTGTATAAA
AATGAAGTTTAAAATAGGAAGAATGTCGCAGAGGGTGATGAATTAAACGG
ATGAGGAAGGGGAGTTGGATTGTAGTCCGAGCCCGCACGTCATGTGTTTC
TGTTACAGGCAGAATGAGAAAAAAAAGAGTTAAAAAAGATGTATGCACGT
ATGGATGTCTGCATCTG back to topprotein sequence of NO20G00260.1 >NO20G00260.1-protein ID=NO20G00260.1-protein|Name=NO20G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MPGTLTTTSPAMISQLVGHKNFVRVNPMSDQFEIKRFHHLELYCGDASNT
SRRFAWGLGLAQVAKSDHSTGNPLYASYVLQSQELVFVFTAPYAPPSSSF
PSSSPRHAVPITNIADAPSSSSSIPHPAFSPTDAAGFFTRHGLAIKAVGI
EVEDAHVAYEKCVAHGGKGVLPAQLLKDVETGQSMLMSEVMAYPEEEGEV
VLRFVSGGFKGPFLPNYQSTPSPPLSYGLQRIDHVVSNVRHLLPVANHLM
GMTGMHEFAEFTAADVGTVDSGLNSLVLASNNEKVLMPVNEPTFGTKRKS
QIQTYLEQNQGPGVQHIALKTDDIFATMEELKRRTHVGGFDFMPKASPEY
YRGLPQKIGAGVLTEEQLTRVEELGLLVDKDDQGVLLQIFTRPVGDRPTL
FLEIIQRLGCTHDKAGKALAEQAPGCGGFGKGNFSELFKSIEEYEKTLNV
* back to topmRNA from alignment at chr20:89197..93230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G00260.1 ID=NO20G00260.1|Name=NO20G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4034bp|location=Sequence derived from alignment at chr20:89197..93230- (Nannochloropsis oceanica)
CAGACACCAAACGCACACAGACGCCCAGCAAAGGCATTTCACACCAGTTA
TGCCAGGGACACTGACCACCACCTCGCCAGCGATGATCAGCCAGCTTGTC
GGCCACAAGAACTTTGTGCGGGTGAACCCCATGAGCGACCAGTTTGAGGT
GAGGAAAAGCTGAAGCGACTGAAGGGGGGCCGAATGAGGGGGTACATAGG
GACGGATTGCCGCAGCGCACCACACTCACGCTCAGATATTCTCGTCAGCG
CGTTTGTCTTGATGCACGTCGTGAGACAAATGAATTAGGTGGGAAGAGGA
TGCTTCACGATCTCACTCGACAGAGAAGTTGCACACCCCTCACCCCACTT
CGTTGGAAAGCAACACCCCTTCAGTCACACACACCCCAACCACTCCTTCC
CTTCCGCTTACAGATCAAACGCTTTCACCATCTTGAGCTATACTGTGGCG
ACGCCTCCAACACGTCCCGTCGTTTTGCATGGGGCTTGGGCCTGGCTCAA
GTGGCCAAATCGGACCATTCAACCGGCAATCCGCTCTACGCCTCCTACGT
CCTTCAGAGCCAAGAACTCGTCTTTGTCTTCACAGCGCCTTATGCACCTC
CTTCTTCCTCCTTCCCTTCCTCCTCTCCGCGACATGCCGTGCCCATCACC
AATATTGCCGATGCCCCCTCCTCCTCCTCCTCCATCCCTCACCCTGCTTT
CTCCCCTACCGACGCCGCCGGTTTCTTTACTCGCCATGGGCTGGCCATTA
AAGCGGTCGGAATTGAGGTAGAGGATGCCCACGTAGCTTACGAAAAGTGT
GTGGCGCATGGAGGGAAGGGTGTGCTGCCTGCACAGGTAGGGGAGGGATG
GAGGGAGGGAGGGAGGAAGGGAGGGGGGGGGGTAGGATGTGTGAGAAGGT
TTCGCAGTGTACGAACGACAAGTGTGTGGCATGGAGAAAAGGGTGTGTGC
TGGCTTCGCAGGTAGGGAAGGGAAGATGATTGTATTTGCTCCTTCGTCCC
TCACCCTTACCTACCTTCCTTCCCTTCCTAGCTGCTGAAGGACGTGGAAA
CAGGGCAGTCAATGCTGATGTCGGAGGTCATGGCATATCCCGAGGAGGAA
GGGGAGGTGGTGCTGCGCTTTGTGAGCGGGGGGTTCAAAGGTGAGGGAGG
GAGGGAGGGAGGGAGGGAAGGAGGAATGGTGTATTCGTTTGGATCGCAAT
GGACACGCCCCCCCACCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTAGGCCCCTTCCTGCCCAACTACCAATCCACGCCGTCCCCGCCTCT
TTCTTACGGGCTGCAGCGAATCGACCACGTCGTTTCGAACGTGCGGCATC
TGCTGCCGGTTGCTAATCACTTGATGGGCATGACGGTGAGACCCCCCCCC
TCCCTCCCTCCCTCCCTCCCTCTCATGATGATGATTATGATATCTTGGTG
TTGGATGTGCTCCAACTGCTGCCAGTCGTTATTCACTTGATGGATGCTAC
GGACGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGCGATAGGCGGACGGAG
AGAGGAAGGCAGGGAGGGAGGGAGGGAGGGAGGGCGATGGGCTACAACCC
TATCTCTTCCATCGATGTCCTTCAACCTCAGCTCACTCCCTCATCATCCC
TTCCTCCCTCCCTTCCTCCATCCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CCTCCCTCCCTCCCTTCCTCCCGCCCTTGCAGGGGATGCATGAATTCGCG
GAGTTTACGGCCGCGGACGTGGGCACCGTCGACAGCGGCTTGAACAGCCT
CGTGCTGGCGTCTAACAACGAGAAGGTCTTAATGCCCGTCAATGAACCTA
CCTTTGGCACTAAGCGCAAGAGTCAGGTGAGTACGCCCCTCCACCCCCCC
CTCTTCCCCTGTCTTTCCGTTCTCTCCCCTCCCACTCCCTCCTCTTTCCC
TCTCTTCCTCCCTTCCACCCTCCTTCCCTTCCTCAATCCCCCCTCCCTCC
CTCCCTCAGATCCAAACCTACCTAGAGCAAAATCAGGGGCCAGGGGTCCA
ACACATCGCGCTCAAGACAGACGATATTTTCGCCACCATGGAGGAGCTGA
AAAGAAGGACGCACGTAGGAGGTAAGTACCCCTCCCTCCCTCCCTCCCGC
CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTGCTTCCTTGCTTTTGGCCC
CCTCGTCCTCCCGTTTCGTCTCTCTCCCTCTCTCTCTTCCTTCTCCACCT
CTATATAATTCATCCACCCTGCCCCTCCTTCTCCCTTCTTTCCCCTCACC
TTTCTCCCTCCCTCGTAGCTTCCTTTTGTGCCGCCTTCCCACGTTATTTG
CTTCCCTTTCTCCCATTCCTCTTCTTGTCCAAGTTCGACGCTTGCTCCCT
TCACATCTCTCTCTCCCTCCCTCCCTCTTTTTAGGCTTCGACTTCATGCC
CAAGGCCTCTCCCGAGTATTATCGTGGCCTTCCTCAGAAGATAGGCGCTG
GAGTGTTGACTGGTAAGGGTCGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATTGAAGAAAGAGAGGGAGGGAGGGAGGGGGGGATTGAAGGGAGAG
AGGGAAGGAGTGAAGGAGGGAGTGAGGGGGAGGGAGGGAGGGAGGGAGGG
AAGGAGAGAGGGAGGGAGGAGAGAGGAGCATGACGTTTGCAGGGGCGTTA
ACCGTTTTTGTTCCAAATATTTAATTCAAAAGTTTCTCGTCTGTCTCCCG
CTTTCCCCCACCTCTATCCCTCATGCTTCATTTATGCTTGTCTCTTTATT
CGATTTTTCGTATTTTTTAGCTCAGCTATCCCTCTTCCTCATTACCTTAC
CCTTCTGCCCTCCTCACGGATCGCGATAGAAGAGCAGCTGACGCGGGTGG
AGGAGCTGGGGCTGCTGGTGGACAAAGATGATCAGGGGGTTTTGCTGCAG
GCACGTGCCCTCACCGCACAACACTCCTCCCTCCTTCTCTCCCTCTTTCC
CTCCTTCCCTCCCTTCTTGTTCTCTTTTCCTTCCTTCCGTCATTATTAAA
ACGTCAAGAGAAGCCATGCTTATCATCTATCCCTCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAAGAT
CTTCACCCGCCCCGTCGGAGATCGGCCCACCCTGTTCCTCGAAATCATCC
AACGCCTCGGCTGCACGCACGACAAGGCGGGAAAGGCACTTGCGGAGCAG
GCCCCGGGATGTGGGGGGTTTGGAAAGGTAGGGGAGGGAGGGAGGGAGGA
AGGGAGGAAGGAGTGAGGAAGGGAGGGGGGGAGGTCATCCACATTGAAGA
CACTCACATGTTTTCCAACCATGCTTCATTCCCGCCTTTCGTTCCCCCCC
TTCCTAAAGGGAAATTTCAGCGAGCTGTTCAAGTCGATCGAGGAGTATGA
GAAAACGCTTAATGTATAGAACGTATTCCATCTGGGGAGAAGAAGGGGAG
GGAGGGAAAGGGAGAGGGAAGGGAAATGGCAGGGAGGGAGGGTGAGAAAA
GAGGAATGATGACTGCAGGAGAGAGAGGCTGGGTGTGGAGGAGGGAAGGA
GGGATGAATGGAGGGAAGGGGGGAGGAGGAGATGGTCGGACGGGTACGCG
GACGAGGCCCGTACCAGGAGAAGAGGGAAAGCGGGATAAATATGTGCTGG
GGATGGTAGGAAGGACCAGGGCAAGCTGATAGATACAAGGGCAGGAACAA
CATCATGTACAGGAGCAGCAGCAGCAGGAAGAGGAGGAAGAGGAGGAGGA
CCACAAAGAGGAGTAGCATTGCCAGCAGCACTAGACCAGTGGTGGGAAAA
GCGGACGGTTGTATAAAAATGAAGTTTAAAATAGGAAGAATGTCGCAGAG
GGTGATGAATTAAACGGATGAGGAAGGGGAGTTGGATTGTAGTCCGAGCC
CGCACGTCATGTGTTTCTGTTACAGGCAGAATGAGAAAAAAAAGAGTTAA
AAAAGATGTATGCACGTATGGATGTCTGCATCTG back to topCoding sequence (CDS) from alignment at chr20:89197..93230- >NO20G00260.1 ID=NO20G00260.1|Name=NO20G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr20:89197..93230- (Nannochloropsis oceanica)
ATGCCAGGGACACTGACCACCACCTCGCCAGCGATGATCAGCCAGCTTGT
CGGCCACAAGAACTTTGTGCGGGTGAACCCCATGAGCGACCAGTTTGAGA
TCAAACGCTTTCACCATCTTGAGCTATACTGTGGCGACGCCTCCAACACG
TCCCGTCGTTTTGCATGGGGCTTGGGCCTGGCTCAAGTGGCCAAATCGGA
CCATTCAACCGGCAATCCGCTCTACGCCTCCTACGTCCTTCAGAGCCAAG
AACTCGTCTTTGTCTTCACAGCGCCTTATGCACCTCCTTCTTCCTCCTTC
CCTTCCTCCTCTCCGCGACATGCCGTGCCCATCACCAATATTGCCGATGC
CCCCTCCTCCTCCTCCTCCATCCCTCACCCTGCTTTCTCCCCTACCGACG
CCGCCGGTTTCTTTACTCGCCATGGGCTGGCCATTAAAGCGGTCGGAATT
GAGGTAGAGGATGCCCACGTAGCTTACGAAAAGTGTGTGGCGCATGGAGG
GAAGGGTGTGCTGCCTGCACAGCTGCTGAAGGACGTGGAAACAGGGCAGT
CAATGCTGATGTCGGAGGTCATGGCATATCCCGAGGAGGAAGGGGAGGTG
GTGCTGCGCTTTGTGAGCGGGGGGTTCAAAGGCCCCTTCCTGCCCAACTA
CCAATCCACGCCGTCCCCGCCTCTTTCTTACGGGCTGCAGCGAATCGACC
ACGTCGTTTCGAACGTGCGGCATCTGCTGCCGGTTGCTAATCACTTGATG
GGCATGACGGGGATGCATGAATTCGCGGAGTTTACGGCCGCGGACGTGGG
CACCGTCGACAGCGGCTTGAACAGCCTCGTGCTGGCGTCTAACAACGAGA
AGGTCTTAATGCCCGTCAATGAACCTACCTTTGGCACTAAGCGCAAGAGT
CAGATCCAAACCTACCTAGAGCAAAATCAGGGGCCAGGGGTCCAACACAT
CGCGCTCAAGACAGACGATATTTTCGCCACCATGGAGGAGCTGAAAAGAA
GGACGCACGTAGGAGGCTTCGACTTCATGCCCAAGGCCTCTCCCGAGTAT
TATCGTGGCCTTCCTCAGAAGATAGGCGCTGGAGTGTTGACTGAAGAGCA
GCTGACGCGGGTGGAGGAGCTGGGGCTGCTGGTGGACAAAGATGATCAGG
GGGTTTTGCTGCAGATCTTCACCCGCCCCGTCGGAGATCGGCCCACCCTG
TTCCTCGAAATCATCCAACGCCTCGGCTGCACGCACGACAAGGCGGGAAA
GGCACTTGCGGAGCAGGCCCCGGGATGTGGGGGGTTTGGAAAGGGAAATT
TCAGCGAGCTGTTCAAGTCGATCGAGGAGTATGAGAAAACGCTTAATGTA
TAG back to top
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