NO20G00190.2, NO20G00190.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00190.2
Unique NameNO20G00190.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3119
Alignment locationchr20:67273..70868 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:67273..70868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00190.2 vs.
Match: EWM22215.1 (glutamine amidohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.300e-63
Identity = 129/231 (55.84%), Postives = 158/231 (68.40%), Query Frame = 0 
Query:   22 FFQENVYLLLAKLQTLLISSSSGSPGQLSALFISNKIKTCPVWGQLAAGEDGSKNVERKDEREYKETGHKEHFDGDDNDDNEERERS----PVLWDYHVVALLETGDSAAFIYDLDTRLEPFPCPASEYVARAFRPDIPMKEEYRQRFRLVPFVPIFRDSFACDRSHMRRPDGSWNAPPPAYPPIRGSRAASPMTLPLFWNVDDQGEERIGGGRGGELGEILSLADLQARV 249
            F +ENVYLLLAKL  L+ SS      QLSALF+SN +K CP+W Q   GE    N ++ ++RE   T        + N++N+  E S    P+LWDYHVVALLET    A++YDLDTRLEPFPCPA  YV +AF+PD+P++EEYRQRFR V F P+ RD FA DRSHMR  DGSW  PPP YPPIRG+ +AS MTLP FW VD++ E    GG  G+LGE+LSL DL  R+
Sbjct:   75 FCEENVYLLLAKLHALISSSEDLLGCQLSALFVSNSLKACPIWMQRETGE-ALGNADQVEDREEAGT--------EGNEENKIAEFSLNDGPILWDYHVVALLETPGGLAYVYDLDTRLEPFPCPAGAYVRKAFKPDLPLREEYRQRFRRVSFSPVLRDCFASDRSHMRALDGSWTVPPPLYPPIRGANSASAMTLPAFWKVDEEKEGEKEGGTEGKLGEVLSLGDLLKRI 296
The following BLAST results are available for this feature:
BLAST of NO20G00190.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22215.11.300e-6355.84glutamine amidohydrolase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00190NO20G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00190.2NO20G00190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00190.2.cds1NO20G00190.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.2.cds2NO20G00190.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.2.cds3NO20G00190.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.2.cds4NO20G00190.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00190.2 ID=NO20G00190.2|Name=NO20G00190.2|organism=Nannochloropsis oceanica|type=mRNA|length=3119bp
TCACAACATAATAATCTCCCCCGCACGCCTATTGTCCCTACCCACCACGC
CCTCCTTCCCCTCCCACAGCCACCACCTCCTGCACCGTCTGAGGAAAATG
GCAAACTGCCATCTCCAAAACCCGTTCCAAAAACTTAAACTGAGCGTCTT
CGGCGATGCGGCTAAAAGACGGCAAGTGCACAAACAAGGCTGCGCTGTGG
GCATGTCCACGGACCCGACACATCTCCAAAGAATTGAAGTAAAGGTAATT
ACACACAAACCGGCCGGGATTTGAGGAAATCGAAACCTCTTCGCGGGTAT
ATCCAGGTCCTGAAGGACTCTCAGCGTGTAAGGCTCGAGCTATTGTATGA
AGCGGCAAGGTCGAAAAAAGGGAGAAGGACGTGTCAGGGTTGGCGTGGGA
GACTGCGGCTTTCCAAGGCTGGAAAGCCCGTTCATCCGGGAAATCAAACG
ACGCTTCATTGTACCCCACGCTTTCTAAACGGAAGCCTTCGATATCGTTG
CGTACGCCTAGGTGCAGGAGCAAAAGGTTGTCTTCTTGCTGGAGGCCTTG
GGTTCTCAAGGTGGTGTGAATTTGCTGCAGCTCGGTTAGGGAGCCGATGG
CGGATGTTTCGAGAATGTGGGTGGAGATTTTAATGATATCTTCCGTCTTC
TGGATCTTATGGATACGTGTGATTGATAGAAAAAAGAGGAGGAAGTTAGA
GAAGAAGGGGAGAGCGCAAAGGATAACCAAAGATAAAAGACAGTTAGTCA
GTTGAAAGGAGTGACAAATCCGTGAGAGGCAGCTTGGAAAGAGGATGTCA
ATGGAAAGAGACAGTTTACGGATATTCGAGCGGGGGGGAAATTTCACCTG
GTCGCCCAGCCGCCGGACTAGGGTCTCGGAGGGGTTAGATGCCACGTCCT
GGAATGGCCCAAAGGCTGTGACGACGACGCGGAGCTGGCAAGGAGGCTGA
GGTAATGGAGGAAGAGGACAAGGAATTCGTTTCCGACTGCTGTTGTCGCG
AAAACGTCTAGCCATGGAGCTTCGGGGTGAATTACCATCTTTTGCAGCAG
AGGAGGAGGAGGAGGAGGGCAAGGAGTTCCGGGTGGAGTGCGATACGAAA
AAGGATGGAAAGTACTGGTGGACGGCCGAAAGAACAGCAGTAGTGGGGTT
TTGGCATTTAAACCTGAGAGAATACGCAAATGGTTCTGCGTGTGAGTGCC
CAACGCAACCTTTCTACGTAGTCCTTTGCGTTGTCGGTACTGCCTGAGAG
GGCTTACCTCGAGATGGAAAGAGAATGTTGCGGCAGGGAATAAAAAGCAT
CAATCAGAACCGTCAGGGTCAGGAAAATGAGGAGTTGCAAGCGAATCTCC
ATCCAAATCGTGGCCGGCGTCCGCGTGACGTCGGATCGTACGAGGAAGGA
GACCCGAGGTGGCGAAGTCCTTGACTTGGGTGAACGAGCGAATTCAAGCC
CGGCTCGGAGCGGAGGGAGGGCTTTGAATGTAGCTTTATCTGCACAGAGC
GGGGAAAGGGGGTAAAGATATGGGTGAGCTCGTCATAAAAAGAATTCGGC
TCAGGAGAGTAAGGGCCGCTCGAGGAGAATTGATCACCGCTGCAGCACCG
GATGCGACAGCTCACACTCATCGATTGCCGCTTTTGCCGTATGAACAAGA
AGATCGCCTCTCAAACGGCCGACGTTGCTGTCGTCCCTCGTTTTGCGTAT
CGAGGTGTTTTCAAAAGCGTGCCTGCTTATTGCTGTGATGACAACCTCAA
AACCACACCGCCGATCACAAACAGACTACGGTGCAAAGGACGGGTGGGTT
CGGACAAGGGGGCAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGC
CCTCGCATGCTTTCCAGCGACAGCACCAGCACCAGCACCAGCACCAGCTA
CAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCA
TTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGT
GCTACTGCGAGGTGAGATAGAGTGAGAAGATTGTAATCCGACAGAAGCAG
GACAACGACAACAGGCGAGACCCATGGCACAGTATATCAGCACAAAGACG
CCTGTACTCTCATGCCCATCCCCGCCGTCCATCCCTTTCTTTCAGGAAAA
TGTTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTT
CTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAA
ACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAA
TGTAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGACACAAGGAAC
ATTTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAGAGATCACCG
GTCTTGTGGGACTATCACGTTGTCGCCCTCTTGGAGACCGGCGATAGCGC
TGCCTTCATCTATGACCTTGACACTCGCCTAGAACCTTTCCCTTGTCCGG
CGTCTGAGTATGTTGCGCGGGCTTTTAGGCCTGACATACCCATGAAGGAG
GAATACCGGCAACGTTTCCGACTAGTGCCCTTCGTGCCCATCTTCCGCGA
TAGTTTCGCCTGCGACCGCTCCCACATGCGGAGACCCGATGGCTCTTGGA
ATGCACCACCGCCGGCTTATCCACCCATAAGAGGATCTAGGGCGGCCTCC
CCAATGACCCTCCCATTATTTTGGAACGTAGACGATCAAGGGGAAGAAAG
AATAGGGGGAGGGAGGGGGGGAGAGCTGGGGGAAATTTTGTCTCTCGCTG
ACCTACAGGCTCGCGTGGGTGCCGGGCGCGGCGGCGAGGACGTTCTGTAT
CAGCGGCGATAGCAAAGGGAGAGAGAAAGCGCACAAAGATGACTGTAAAC
ACGACAATGAGACATTAAATAAGAAGTGGAAATGTAGCGAGTCTCGCGCC
ATAGAAATCCCAAAAAAATCTCACGCTTTGTGTGCATAATGTCCCTGTCT
GTTCATAGATTTGCTCGAACGAAGAGAGCATTGGAAATATTTAAAAAATA
AAATATATATATAATCGAGTCCCTCGTACTGCTGTACATTGAAAATAGGA
AATAACGCGATAAAAGAGT
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protein sequence of NO20G00190.2

>NO20G00190.2-protein ID=NO20G00190.2-protein|Name=NO20G00190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MAQYISTKTPVLSCPSPPSIPFFQENVYLLLAKLQTLLISSSSGSPGQLS
ALFISNKIKTCPVWGQLAAGEDGSKNVERKDEREYKETGHKEHFDGDDND
DNEERERSPVLWDYHVVALLETGDSAAFIYDLDTRLEPFPCPASEYVARA
FRPDIPMKEEYRQRFRLVPFVPIFRDSFACDRSHMRRPDGSWNAPPPAYP
PIRGSRAASPMTLPLFWNVDDQGEERIGGGRGGELGEILSLADLQARVGA
GRGGEDVLYQRR*
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mRNA from alignment at chr20:67273..70868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00190.2 ID=NO20G00190.2|Name=NO20G00190.2|organism=Nannochloropsis oceanica|type=mRNA|length=3596bp|location=Sequence derived from alignment at chr20:67273..70868+ (Nannochloropsis oceanica)
TCACAACATAATAATCTCCCCCGCACGCCTATTGTCCCTACCCACCACGC
CCTCCTTCCCCTCCCACAGCCACCACCTCCTGCACCGTCTGAGGAAAATG
GCAAACTGCCATCTCCAAAACCCGTTCCAAAAACTTAAACTGAGCGTCTT
CGGCGATGCGGCTAAAAGACGGCAAGTGCACAAACAAGGCTGCGCTGTGG
GCATGTCCACGGACCCGACACATCTCCAAAGAATTGAAGTAAAGGTAATT
ACACACAAACCGGCCGGGATTTGAGGAAATCGAAACCTCTTCGCGGGTAT
ATCCAGGTCCTGAAGGACTCTCAGCGTGTAAGGCTCGAGCTATTGTATGA
AGCGGCAAGGTCGAAAAAAGGGAGAAGGACGTGTCAGGGTTGGCGTGGGA
GACTGCGGCTTTCCAAGGCTGGAAAGCCCGTTCATCCGGGAAATCAAACG
ACGCTTCATTGTACCCCACGCTTTCTAAACGGAAGCCTTCGATATCGTTG
CGTACGCCTAGGTGCAGGAGCAAAAGGTTGTCTTCTTGCTGGAGGCCTTG
GGTTCTCAAGGTGGTGTGAATTTGCTGCAGCTCGGTTAGGGAGCCGATGG
CGGATGTTTCGAGAATGTGGGTGGAGATTTTAATGATATCTTCCGTCTTC
TGGATCTTATGGATACGTGTGATTGATAGAAAAAAGAGGAGGAAGTTAGA
GAAGAAGGGGAGAGCGCAAAGGATAACCAAAGATAAAAGACAGTTAGTCA
GTTGAAAGGAGTGACAAATCCGTGAGAGGCAGCTTGGAAAGAGGATGTCA
ATGGAAAGAGACAGTTTACGGATATTCGAGCGGGGGGGAAATTTCACCTG
GTCGCCCAGCCGCCGGACTAGGGTCTCGGAGGGGTTAGATGCCACGTCCT
GGAATGGCCCAAAGGCTGTGACGACGACGCGGAGCTGGCAAGGAGGCTGA
GGTAATGGAGGAAGAGGACAAGGAATTCGTTTCCGACTGCTGTTGTCGCG
AAAACGTCTAGCCATGGAGCTTCGGGGTGAATTACCATCTTTTGCAGCAG
AGGAGGAGGAGGAGGAGGGCAAGGAGTTCCGGGTGGAGTGCGATACGAAA
AAGGATGGAAAGTACTGGTGGACGGCCGAAAGAACAGCAGTAGTGGGGTT
TTGGCATTTAAACCTGAGAGAATACGCAAATGGTTCTGCGTGTGAGTGCC
CAACGCAACCTTTCTACGTAGTCCTTTGCGTTGTCGGTACTGCCTGAGAG
GGCTTACCTCGAGATGGAAAGAGAATGTTGCGGCAGGGAATAAAAAGCAT
CAATCAGAACCGTCAGGGTCAGGAAAATGAGGAGTTGCAAGCGAATCTCC
ATCCAAATCGTGGCCGGCGTCCGCGTGACGTCGGATCGTACGAGGAAGGA
GACCCGAGGTGGCGAAGTCCTTGACTTGGGTGAACGAGCGAATTCAAGCC
CGGCTCGGAGCGGAGGGAGGGCTTTGAATGTAGCTTTATCTGCACAGAGC
GGGGAAAGGGGGTAAAGATATGGGTGAGCTCGTCATAAAAAGAATTCGGC
TCAGGAGAGTAAGGGCCGCTCGAGGAGAATTGATCACCGCTGCAGCACCG
GATGCGACAGCTCACACTCATCGATTGCCGCTTTTGCCGTATGAACAAGA
AGATCGCCTCTCAAACGGCCGACGTTGCTGTCGTCCCTCGTTTTGCGTAT
CGAGGTGTTTTCAAAAGCGTGCCTGCTTATTGCTGTGATGACAACCTCAA
AACCACACCGCCGATCACAAACAGACTACGGTGCAAAGGACGGGTGGGTT
CGGACAAGGGGGCAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGC
CCTCGCATGCTTTCCAGCGACAGCACCAGCACCAGCACCAGCACCAGCTA
CAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCA
TTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGT
GCTACTGCGAGGTGAGATAGAGTGAGAAGATTGTAATCCGACAGAAGCAG
GACAACGACAACAGGCGAGACCCATGGCACAGTATATCAGCACAAAGACG
CCTGTACTCTCATGCCCATCCCCGCCGTCCATCCCTTTCTTTCAGGAAAA
TGTTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTT
CTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAA
ACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAA
TGTAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGACACAAGGAAC
ATTTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAGAGATCACCG
GTCTTGTGGGACTATCACGGTGAGCTCGTGATGCAATGGTCGAGGAAAAT
GAAGAAAGGGGCACAACAAGCTACATTCTTTGCAAACTACATCGTCGAGA
ATTTTTCGAGGCATCTAGAAAATTCTGACCGTCTCCCTCCCTGCTTCCCT
CCCTCCTCTAGTTGTCGCCCTCTTGGAGACCGGCGATAGCGCTGCCTTCA
TCTATGACCTTGACACTCGCCTAGAACCTTTCCCTTGTCCGGCGTCTGAG
TATGTTGCGCGGGCTTTTAGGCCTGACATACCCATGAAGGAGGAATACCG
GCAGTGAGTGGGCACGTAGGGAGGGAGGAAGGGCGGAAGGAATGGCGGGA
GAGAGTTTCCTATTGTGGTGTATTTCACACATTAACGCCTGGACTCATTT
CTACTTTCTTTCCTCCTCCTGCATCTTTATCTGAAGACGTTTCCGACTAG
TGCCCTTCGTGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCAC
ATGCGGAGACCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACC
CATAAGGTACGTTAAAAGTGGTGTTGAGGAGGGCGAAATGAAGGGGGGAG
AAAGAGTGGGATTGCAAGGAAAAAGGAGAAAGAAAAAGAAATAAAGGTAC
GCATATTCGTTCATAACTCTATCGCGTCATCGACGAGAGGTCTTTTCCTC
ACGCCAAGCCTCGCTTATTCTTCCTCTTCTCCCTTCCTCCATCTTACGTG
AATTACAGAGGATCTAGGGCGGCCTCCCCAATGACCCTCCCATTATTTTG
GAACGTAGACGATCAAGGGGAAGAAAGAATAGGGGGAGGGAGGGGGGGAG
AGCTGGGGGAAATTTTGTCTCTCGCTGACCTACAGGCTCGCGTGGGTGCC
GGGCGCGGCGGCGAGGACGTTCTGTATCAGCGGCGATAGCAAAGGGAGAG
AGAAAGCGCACAAAGATGACTGTAAACACGACAATGAGACATTAAATAAG
AAGTGGAAATGTAGCGAGTCTCGCGCCATAGAAATCCCAAAAAAATCTCA
CGCTTTGTGTGCATAATGTCCCTGTCTGTTCATAGATTTGCTCGAACGAA
GAGAGCATTGGAAATATTTAAAAAATAAAATATATATATAATCGAGTCCC
TCGTACTGCTGTACATTGAAAATAGGAAATAACGCGATAAAAGAGT
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Coding sequence (CDS) from alignment at chr20:67273..70868+

>NO20G00190.2 ID=NO20G00190.2|Name=NO20G00190.2|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr20:67273..70868+ (Nannochloropsis oceanica)
ATGGCACAGTATATCAGCACAAAGACGCCTGTACTCTCATGCCCATCCCC
GCCGTCCATCCCTTTCTTTCAGGAAAATGTTTATCTACTTCTGGCCAAGC
TCCAAACCCTTCTTATTTCATCAAGTTCTGGTTCACCAGGCCAGCTCTCG
GCCCTCTTCATCTCCAACAAGATCAAAACTTGTCCAGTGTGGGGTCAACT
GGCAGCAGGAGAAGACGGCTCAAAGAATGTAGAGAGGAAGGATGAACGCG
AGTACAAGGAGACGGGACACAAGGAACATTTCGATGGTGACGATAACGAC
GACAACGAGGAGAGGGAGAGATCACCGGTCTTGTGGGACTATCACGTTGT
CGCCCTCTTGGAGACCGGCGATAGCGCTGCCTTCATCTATGACCTTGACA
CTCGCCTAGAACCTTTCCCTTGTCCGGCGTCTGAGTATGTTGCGCGGGCT
TTTAGGCCTGACATACCCATGAAGGAGGAATACCGGCAACGTTTCCGACT
AGTGCCCTTCGTGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCC
ACATGCGGAGACCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCA
CCCATAAGAGGATCTAGGGCGGCCTCCCCAATGACCCTCCCATTATTTTG
GAACGTAGACGATCAAGGGGAAGAAAGAATAGGGGGAGGGAGGGGGGGAG
AGCTGGGGGAAATTTTGTCTCTCGCTGACCTACAGGCTCGCGTGGGTGCC
GGGCGCGGCGGCGAGGACGTTCTGTATCAGCGGCGATAG
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Synonyms
Publications