NO20G00050.1, NO20G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00050.1
Unique NameNO20G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr20:17145..18713 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:17145..18713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00050.1 vs.
Match: EWM22234.1 (phytochelatin synthase [Nannochloropsis gaditana])

HSP 1 Score: 501.1 bits (1289), Expect = 4.100e-138
Identity = 289/569 (50.79%), Postives = 345/569 (60.63%), Query Frame = 0 
Query:    1 MSTSSSTSTKPNEPDPQSKCCPPPNTFSPLASTRLEIPLSSPLLTPRSTLASPRPVPTTFYRRPLPPATCIAFSSPEGRQLFTEALAAGGMNCFFPLIEHFHTQSEPAYCGLGSLAMLLNALAIDPGRIWKGPWRWFDESLLDCCEPLEVVQSQGISLVKANCLARCNGAKSRLRHGDTVSVEGFRDDVLRVTSSSVG---FVGEGKTN----EGQQPQSRKE-------------DEFMLCGYSRKLLGQTGDGHFSPVGGYHAAKDLVLILDVARFKYPPHWVPLPLLHAALQPHDPATGKARGYLLLSQNRWSEALLFTLDPDRFGDWPALRDWLLKLHRQEAQASIKGTGERGEGEGRRILVASKAGFEAFVSAVPESVASLVTTYAYLKCI------------LHDYPGSKSSSRSSGHSSSNSNVRKENPQ------EAFIRPLVRAIEAYPAFALLPPHGKDSKAQ----EGK---GSSEKESVCCPPISVDERHALVVFFLALVAWAGEELEEGETSSSSPTS--------------SWKVENEALKREVTQLKVRLQAIA 511
            MS SSS ST          CC P  +   L+    + PL  P   P  +  SP  +  TF+RRPLP  +C+A S  EGR LF EAL AG M CF PLIEHFHTQS+PA+CGLG+L M+LNAL IDPGR WKGPWRWFDESLLDCC PL+VV+++GI+L  A+CLA+CNGA SRL++GD V ++ FR+DV RVTS+S     F   G +      G+     KE              EFMLC YSR  LGQTGDGHFSPVGGYHA +DLVLILDVARFKYPPHWVPLPLLHAALQP DP+TG ARGYLLL ++  S A LFTLDPDRFGDW  LRDWLL  H +EAQ S++G G  GEG        ++  F  F+  +PE VASLV  Y YLKC             L D   S  + R    +S+ S       +      +AF+  LV AIE +PAF+++P  G   + Q    EGK   G   K   C P +SVDERHA VV FLAL  WA E    G T+++ P S               W+ E+ AL REV QLKVRLQA+A
Sbjct:   55 MSCSSSDST----------CCRPSRSTGSLSKPHADSPL--PSAHPHGS--SPTRLSRTFHRRPLPADSCVALSGREGRALFNEALGAGDMECFLPLIEHFHTQSDPAFCGLGALTMVLNALQIDPGRTWKGPWRWFDESLLDCCAPLDVVRAEGITLANAHCLAQCNGATSRLQYGDRVPLQAFREDVRRVTSASPAPPSFSPPGTSGATAKRGELVVGGKEVAKGHSEGGGGFGGEFMLCAYSRAALGQTGDGHFSPVGGYHAGRDLVLILDVARFKYPPHWVPLPLLHAALQPPDPSTGTARGYLLLGRHPGSAAWLFTLDPDRFGDWACLRDWLLAQHWEEAQTSMRGGGRVGEGGRAPHFDLTEDSFRRFLETLPERVASLVVPYPYLKCSSRLSAPADSSASLDDTDQSGDAERMGARNSTTSGAEGSGREGGGHNRDAFLEALVDAIEKHPAFSMVPARGAWQQNQGDQCEGKRGGGGERKGGYCSPAVSVDERHASVVLFLALAMWAEE--GRGATAATPPPSPSPQEPSPRLRPRPGWRWEDSALAREVRQLKVRLQALA 607
The following BLAST results are available for this feature:
BLAST of NO20G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22234.14.100e-13850.79phytochelatin synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00050NO20G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00050.1NO20G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00050.1.cds1NO20G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00050.1 ID=NO20G00050.1|Name=NO20G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCA
GAGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTC
GTTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTC
GCTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCC
AGCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAG
AGGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCAC
TTCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGAT
GCTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCT
GGCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTA
GTGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTG
CAATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGG
GATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTA
GGGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGA
CGAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCG
ATGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTA
CTCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCT
CCCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAG
CGCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTG
TTCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTG
GCTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTG
GAGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCG
GGCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGT
AACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCA
AGAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGG
AAAGAGAACCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGA
GGCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGG
CGCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCT
ATTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGT
GGCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCC
CCACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACC
CAACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTT
AACCTGGGATCAGCAATAG
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protein sequence of NO20G00050.1

>NO20G00050.1-protein ID=NO20G00050.1-protein|Name=NO20G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MSTSSSTSTKPNEPDPQSKCCPPPNTFSPLASTRLEIPLSSPLLTPRSTL
ASPRPVPTTFYRRPLPPATCIAFSSPEGRQLFTEALAAGGMNCFFPLIEH
FHTQSEPAYCGLGSLAMLLNALAIDPGRIWKGPWRWFDESLLDCCEPLEV
VQSQGISLVKANCLARCNGAKSRLRHGDTVSVEGFRDDVLRVTSSSVGFV
GEGKTNEGQQPQSRKEDEFMLCGYSRKLLGQTGDGHFSPVGGYHAAKDLV
LILDVARFKYPPHWVPLPLLHAALQPHDPATGKARGYLLLSQNRWSEALL
FTLDPDRFGDWPALRDWLLKLHRQEAQASIKGTGERGEGEGRRILVASKA
GFEAFVSAVPESVASLVTTYAYLKCILHDYPGSKSSSRSSGHSSSNSNVR
KENPQEAFIRPLVRAIEAYPAFALLPPHGKDSKAQEGKGSSEKESVCCPP
ISVDERHALVVFFLALVAWAGEELEEGETSSSSPTSSWKVENEALKREVT
QLKVRLQAIATERSSSLTWDQQ*
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mRNA from alignment at chr20:17145..18713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00050.1 ID=NO20G00050.1|Name=NO20G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr20:17145..18713+ (Nannochloropsis oceanica)
ATGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCA
GAGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTC
GTTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTC
GCTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCC
AGCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAG
AGGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCAC
TTCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGAT
GCTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCT
GGCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTA
GTGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTG
CAATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGG
GATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTA
GGGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGA
CGAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCG
ATGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTA
CTCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCT
CCCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAG
CGCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTG
TTCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTG
GCTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTG
GAGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCG
GGCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGT
AACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCA
AGAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGG
AAAGAGAACCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGA
GGCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGG
CGCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCT
ATTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGT
GGCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCC
CCACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACC
CAACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTT
AACCTGGGATCAGCAATAG
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Coding sequence (CDS) from alignment at chr20:17145..18713+

>NO20G00050.1 ID=NO20G00050.1|Name=NO20G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr20:17145..18713+ (Nannochloropsis oceanica)
ATGAGCACAAGCAGCAGCACGAGCACCAAGCCAAACGAACCCGACCCGCA
GAGCAAATGCTGCCCGCCGCCCAATACATTTTCTCCTCTTGCATCGACTC
GTTTGGAAATACCCCTGAGCTCGCCTCTCCTCACTCCCCGCTCAACGCTC
GCTTCCCCACGTCCTGTTCCTACTACGTTCTACCGTCGACCCTTGCCCCC
AGCGACGTGTATCGCCTTCTCAAGTCCTGAAGGCCGCCAGTTGTTCACAG
AGGCGTTGGCAGCAGGAGGAATGAATTGCTTCTTCCCTCTGATTGAGCAC
TTCCACACACAATCAGAACCGGCATACTGCGGCTTGGGTTCTTTAGCGAT
GCTATTGAACGCGCTCGCCATCGATCCCGGGCGGATTTGGAAAGGCCCCT
GGCGATGGTTTGATGAATCGTTGCTTGACTGCTGCGAGCCCTTGGAGGTA
GTGCAGAGCCAGGGCATCTCATTGGTGAAGGCTAATTGTCTTGCACGTTG
CAATGGGGCGAAGAGCAGGCTGAGGCATGGCGACACTGTCTCTGTCGAGG
GATTCAGGGACGACGTCCTGCGCGTCACTTCTTCGTCGGTTGGTTTCGTA
GGGGAAGGCAAAACAAACGAAGGGCAACAACCGCAGTCTAGGAAAGAAGA
CGAGTTTATGCTCTGTGGGTATTCCCGCAAGCTGCTGGGGCAAACCGGCG
ATGGGCACTTTTCTCCCGTTGGTGGCTACCACGCGGCCAAGGACCTTGTA
CTCATTCTCGACGTGGCGCGCTTCAAGTACCCTCCCCACTGGGTGCCCCT
CCCCCTTCTCCATGCAGCTCTTCAACCCCATGACCCCGCCACGGGGAAAG
CGCGGGGCTATCTCCTCCTCTCCCAAAACCGGTGGTCAGAGGCCTTGCTG
TTCACGCTGGACCCAGATCGCTTCGGGGACTGGCCCGCCCTTCGAGATTG
GCTCCTCAAGCTTCACCGACAAGAGGCACAGGCATCCATCAAAGGGACTG
GAGAAAGAGGAGAAGGGGAGGGGCGACGGATCCTGGTGGCGAGCAAGGCG
GGCTTTGAAGCGTTTGTGTCGGCGGTGCCGGAGTCTGTGGCCTCGTTGGT
AACAACCTACGCCTACCTCAAATGCATACTTCACGATTACCCAGGTAGCA
AGAGCAGCAGCAGAAGTAGCGGTCATAGTAGTAGCAACAGCAATGTAAGG
AAAGAGAACCCTCAAGAGGCTTTCATTCGCCCCTTGGTCCGTGCAATCGA
GGCCTACCCAGCGTTTGCTCTGCTGCCGCCGCACGGAAAGGATAGCAAGG
CGCAGGAGGGGAAAGGAAGTAGTGAGAAGGAAAGCGTATGCTGTCCACCT
ATTTCTGTCGATGAACGACATGCGTTGGTGGTGTTCTTCTTGGCATTGGT
GGCGTGGGCGGGAGAAGAGCTTGAAGAGGGCGAAACGTCCTCCTCCTCCC
CCACTTCTTCGTGGAAAGTGGAGAACGAGGCGTTGAAACGCGAGGTAACC
CAACTGAAGGTCAGGCTGCAGGCTATTGCCACAGAGCGTTCCTCCTCCTT
AACCTGGGATCAGCAATAG
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Synonyms
Publications