NO19G02620.1, NO19G02620.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02620.1
Unique Name	NO19G02620.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3187
Alignment location	chr19:781881..789160 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:781881..789160 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G02620.1 vs.
Match: ODN05225.1 (ATP-binding cassette sub-family D member 3 [Orchesella cincta])

HSP 1 Score: 280.0 bits (715), Expect = 2.900e-71
Identity = 209/659 (31.71%), Postives = 324/659 (49.17%), Query Frame = 0

Query:  285 GGGGVALNDEFLRQLIRLVRKLIHSWKTREAACLGGMVFLLLARTACDLRMISLVVGAERAIVMGDRPSFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQAKYMRGFTFYSVTTLQGRSREMEQLMTVDVDKFCLSLTELLSNVLKPTLDILIYARRLQTSVGSVIPLAMALYLFSSGLVLTRTRRPAGDYAAAVQRREGDYRFVSHRLVTHAEEVAFYDGIHREGNHVKETFRSLLDTIRRATRFRYSMDVLDSVMAKYMATALGWILLNRVAMHQKRVASLSSLSSPSLSSSTTPLSSPPPSPPPSPATSYESFHRSARMMFNFAQALAAIVLAGREATRLTGYTDRVLRLEKILDNLHQQEEQTSLQDRQDQEEEEGSGLEGGRRRGRSNGHVQEDYDVIELQGVPIVTPPVKGKSNSNGSSSTAITGLSSSTGAGEGRGGGGGRGRGGGGGGGGRGEK-------GEWLTSPLTLRIDRGMHVLVTGPNGSGKSSLFRMICGLWPVTEGRLIKPPRSQLFYIPQRPYLPLGTLRDQVIYPHSVSDMAQAGRTDQEIMALLAEIQLSYLAPTPESNPADAPLPSSLPPSLASSFPSFSSLANLVTRSALSTTDKDEGGREGGREEALDRVCDWDETLSGGEKQRL 937
            G  G  ++  F  QL  ++R LI SWK  E   +  +  +L+ R  CDL  I L    E AI+ G+   F   +A F   M  +   NA LKY+ R+L +  R RLT HL  KYM   TFY    L    R ++QL+T DV+KF  +L  L S + KP LDI+IY   + +++G+ +P  M LYL  +  V+ R R+P     A  Q  EG++RF + R++T++EE+AFY G  RE + +   F +L   +   T F++ M+  ++++AKYMAT +G+  ++R    + R    + + + + +                     E++++S RM+ N A A+   +L  ++ TRL GYT RV  L ++LD +               +EE     EG R +  +            L  +P  T   +GK  +N   +  +  +S           G G GR        R E+       G+ L   L++ +  G +VLV GPNG GKSSLFR++  LWP+  G L KP R QLFY+PQ+PY+P GT RDQ+IYP +  DM + GR D++++  L  + L ++    E+             S A        L + V+  A     ++E     G +  +D + +W + LSGG+KQR+
Sbjct:   62 GKSGKRVDKRFFHQLKTIIRILIPSWKCPEVGYMSLVTVMLIVRALCDLWTIYLGTLIESAIICGEPLRFNRLIAEFAMTMPTMTLTNATLKYSIRQLEIRFRSRLTHHLMEKYMHKLTFYK---LNQSERNIDQLITTDVEKFTSTLANLYSQMSKPLLDIIIYVYGISSTIGASVPGTMLLYLAGAAAVIARLRKPMARLTATEQSLEGEFRFGNSRIITNSEEIAFYKGGDRELHWMLSCFNNLYRHLDGFTGFKFIMEFFENLIAKYMATIVGYYAVSRPFFAKSRGGQETGVLATAKTHQQRQ----------------ETYYKSGRMLLNLALAMGRFILNTKDLTRLAGYTSRVSHLMEMLDQI--------------NDEENARNSEGDRMKNSAES----------LSTIPSQT---RGKHRNN-KKAAVVPNIS-----------GVGVGRYVVQDHIIRFEQVPIVTPNGDVLVKALSMEVKSGTNVLVCGPNGCGKSSLFRILGELWPLRGGVLTKPIRDQLFYVPQKPYMPYGTFRDQIIYPDTKQDMLRKGRKDEDLLEYLGLVDLEWIVDLGETGQYSNGRMYEAKVSTA--------LLDAVSEGA----GQEESTNFRGSKYRMDAIENWMDVLSGGQKQRI 650

The following BLAST results are available for this feature:

BLAST of NO19G02620.1 vs.

BLAST of NO19G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
ODN05225.1	2.900e-71	31.71	ATP-binding cassette sub-family D member 3 [Orches...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02620	NO19G02620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02620.1	NO19G02620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02620.1.cds1	NO19G02620.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds2	NO19G02620.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds3	NO19G02620.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds4	NO19G02620.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds5	NO19G02620.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds6	NO19G02620.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds7	NO19G02620.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds8	NO19G02620.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds9	NO19G02620.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds10	NO19G02620.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds11	NO19G02620.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds12	NO19G02620.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds13	NO19G02620.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds14	NO19G02620.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds15	NO19G02620.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds16	NO19G02620.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds17	NO19G02620.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds18	NO19G02620.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds19	NO19G02620.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02620.1.cds20	NO19G02620.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:781881..789160-
coding sequence from alignment at chr19:781881..789160-

mRNA sequence

>NO19G02620.1 ID=NO19G02620.1|Name=NO19G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=3187bp
ATGCTCATGACGCGGATGCGGCTGCCAGTCTGGTTGCTCCTGGATTTGGA
AGTAATAAGCTGGTCTCACGTCATGCGAGATGGCTGTGTGTATCCTCCTC
CTCCACCCATCCAGAGCTTCCCAGCCTCCCCTGCTGTCTACCCCCTCGTC
TCTACGCAGCCAACCTGTGTAGATTATAATGCAGAGTCCAACAGCAGGAA
GGAGGACACCAAATTGGGCTCGGGGCCAGCGAGACCTGCCAACATGGCCC
CGGCCTCCATCCCACCGGGCCCCAAGGCCAATCCGAATGTGGTGGCCGCG
TTTTTCAATTCCTTCATGTCAGCAGGCGAGCAGAAATTTACCGTGGTCTC
CTCCTTCTTTTCAAGCGGCTTGTTTCTGTTAGCCCTCGCGTTGGTGAAGC
AATATTCCAGCCTCAAAGAGCTCCAGGACGCCCATGAAGGCCCTCCAGAG
ACTCAACAGCAGCAGCAGCAGCTGCTGCAGCCGCTGCCGCAAAAGCAGCA
CTTATCGCAGTCTTTGCCCCAGGGGCGGACGGGCACCCTGCTGACGGTCG
ATACGAAAGGCAGTGGCCTCGACAGAAGTCGGTATGGAAGTAATGATCAT
CACCAGAGCAGGACGAGCATGACCTCCCTCCCTACCCCTGCCCCCTCCCC
CCCTCCATCCTCCTCCCCTTTCTTCTCCACGATGGTGGGGGGGAATGCGC
AGCCGACGACCCCGCGCAGCAGCAGCAGTGTCCACACGACGACTACCATG
ACAACGCCATCCTCCACCACGGCCATGCCATCGAAAGGAAAGAAGAAGGG
CAGCAGCAGCAGCAGCAGCAACAGCAGCATCAGTGGTGGTGGTGCTGATG
TAGGAGGAGGAGGGGTAGCGCTGAATGACGAGTTTCTGAGGCAGTTGATA
CGGTTGGTCCGAAAACTCATTCATTCCTGGAAGACGCGCGAGGCTGCTTG
CCTTGGGGGGATGGTATTCCTGCTGCTGGCCCGGACGGCGTGTGACTTGC
GGATGATCTCTCTGGTGGTGGGGGCCGAGCGTGCCATTGTGATGGGAGAC
AGACCCTCGTTTCGTATTTCCCTTGCGCGGTTCTTGCGTTTCATGGTACC
TGTGGCCTGCGTGAATGCGCTGCTAAAATACACCACACGCGAGCTCTCCT
TGGGGCTACGGCAGCGCCTTACAGAGCACCTGCAGGCCAAGTATATGCGG
GGCTTTACCTTCTACTCGGTCACTACCCTCCAAGGCCGATCCCGGGAGAT
GGAGCAGCTCATGACAGTGGACGTCGACAAGTTCTGCCTCAGCCTCACAG
AGTTACTCTCCAACGTGCTCAAACCGACCCTGGATATTCTCATTTATGCA
CGACGGCTGCAGACCTCGGTGGGCTCTGTCATTCCCCTGGCCATGGCGCT
CTACCTCTTCTCCTCGGGCCTCGTGCTGACACGGACGAGGCGGCCGGCGG
GCGATTATGCGGCTGCGGTGCAACGGCGGGAGGGCGACTACAGATTTGTC
TCTCACCGGCTAGTAACGCACGCGGAAGAGGTGGCATTCTACGACGGCAT
TCACAGGGAGGGGAACCATGTGAAGGAAACTTTCCGGTCGCTTCTCGACA
CCATCCGACGTGCGACCCGTTTCCGTTACTCCATGGACGTGTTAGACAGC
GTTATGGCCAAGTACATGGCCACGGCCCTCGGGTGGATTCTCCTCAACCG
AGTGGCCATGCATCAAAAGCGAGTCGCCTCCCTCTCCTCCCTCTCCTCCC
CCTCCCTCTCCTCCTCCACCACCCCCCTTTCCTCCCCCCCTCCCTCCCCC
CCTCCCTCCCCCGCTACCTCCTATGAGTCCTTCCATCGCTCTGCAAGGAT
GATGTTCAATTTCGCGCAAGCCCTAGCTGCCATCGTGCTCGCCGGGAGAG
AGGCCACGAGGCTGACGGGCTACACGGACCGCGTACTGCGTCTCGAGAAA
ATTCTCGACAACCTCCACCAACAGGAGGAGCAAACCAGCCTGCAGGACCG
TCAAGATCAAGAGGAAGAGGAAGGCTCAGGCCTCGAAGGGGGTCGGAGGA
GGGGGAGGAGTAATGGGCACGTGCAGGAGGATTACGACGTCATCGAGCTT
CAAGGAGTGCCCATCGTGACGCCGCCCGTGAAGGGCAAGAGCAACAGCAA
CGGCAGCAGCAGTACTGCCATTACCGGCCTCAGCAGCAGTACTGGTGCAG
GAGAAGGAAGAGGAGGAGGAGGAGGACGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGACGAGGAGAGAAGGGGGAGTGGCTGACCTCGCCGCTGACCCT
CCGCATCGATCGAGGGATGCACGTCCTCGTTACGGGTCCAAACGGCAGTG
GCAAGTCTTCACTCTTCCGGATGATCTGTGGCTTATGGCCTGTCACGGAA
GGGAGGCTTATCAAACCTCCTCGCTCCCAGCTCTTCTATATCCCCCAACG
GCCTTATCTGCCCCTTGGCACCCTCAGGGATCAGGTGATTTATCCCCACT
CGGTCTCGGACATGGCCCAGGCGGGGAGGACGGATCAGGAGATAATGGCT
CTGCTGGCAGAGATCCAACTCTCCTATCTGGCTCCGACTCCTGAAAGCAA
CCCGGCCGACGCTCCGCTCCCTTCCTCCCTCCCTCCCTCCCTCGCTTCTT
CCTTCCCTTCCTTCTCCTCCCTTGCCAACCTCGTCACGCGCTCGGCCCTC
TCTACCACGGACAAGGACGAGGGCGGGAGGGAGGGCGGGAGGGAGGAGGC
ATTGGACCGTGTGTGTGACTGGGACGAGACCCTATCGGGGGGGGAGAAGC
AGCGCCTGGTGTTCGCCCGCTTGCTCTACCATAGGCCTGCCTTTGCCATC
TTGGATGAATGCACCAGCGCCGTGTCGAGCGATATGGAGGACCGGCTCTA
TACCCGTGCCAAACGCGATGGCATTACCCTCCTGACTGTGGCCCACAGGA
AGTCTTTGTGGAAGCACCACGAACACTTGTTGGTGCTTGACGGGCGGGGA
GGATGGTCGTTCAGGCCAATACGGGACGTGGAGCCGCAAGCTGCTGCAAT
CACAGACATGTGAGCGGGAGGGATGAGAGAGGGGGAGGAACAAGAGAAGG
CAAAGTGTACTTAAAATTAAAGAAATGAAAGATATGTGAAGGACGGATGG
GTCTTCTCGTCGACCACAACGAAGCATTAATTTGAAC

protein sequence of NO19G02620.1

>NO19G02620.1-protein ID=NO19G02620.1-protein|Name=NO19G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1021bp
MLMTRMRLPVWLLLDLEVISWSHVMRDGCVYPPPPPIQSFPASPAVYPLV
STQPTCVDYNAESNSRKEDTKLGSGPARPANMAPASIPPGPKANPNVVAA
FFNSFMSAGEQKFTVVSSFFSSGLFLLALALVKQYSSLKELQDAHEGPPE
TQQQQQQLLQPLPQKQHLSQSLPQGRTGTLLTVDTKGSGLDRSRYGSNDH
HQSRTSMTSLPTPAPSPPPSSSPFFSTMVGGNAQPTTPRSSSSVHTTTTM
TTPSSTTAMPSKGKKKGSSSSSSNSSISGGGADVGGGGVALNDEFLRQLI
RLVRKLIHSWKTREAACLGGMVFLLLARTACDLRMISLVVGAERAIVMGD
RPSFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQAKYMR
GFTFYSVTTLQGRSREMEQLMTVDVDKFCLSLTELLSNVLKPTLDILIYA
RRLQTSVGSVIPLAMALYLFSSGLVLTRTRRPAGDYAAAVQRREGDYRFV
SHRLVTHAEEVAFYDGIHREGNHVKETFRSLLDTIRRATRFRYSMDVLDS
VMAKYMATALGWILLNRVAMHQKRVASLSSLSSPSLSSSTTPLSSPPPSP
PPSPATSYESFHRSARMMFNFAQALAAIVLAGREATRLTGYTDRVLRLEK
ILDNLHQQEEQTSLQDRQDQEEEEGSGLEGGRRRGRSNGHVQEDYDVIEL
QGVPIVTPPVKGKSNSNGSSSTAITGLSSSTGAGEGRGGGGGRGRGGGGG
GGGRGEKGEWLTSPLTLRIDRGMHVLVTGPNGSGKSSLFRMICGLWPVTE
GRLIKPPRSQLFYIPQRPYLPLGTLRDQVIYPHSVSDMAQAGRTDQEIMA
LLAEIQLSYLAPTPESNPADAPLPSSLPPSLASSFPSFSSLANLVTRSAL
STTDKDEGGREGGREEALDRVCDWDETLSGGEKQRLVFARLLYHRPAFAI
LDECTSAVSSDMEDRLYTRAKRDGITLLTVAHRKSLWKHHEHLLVLDGRG
GWSFRPIRDVEPQAAAITDM*

mRNA from alignment at chr19:781881..789160-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02620.1 ID=NO19G02620.1|Name=NO19G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=7280bp|location=Sequence derived from alignment at chr19:781881..789160- (Nannochloropsis oceanica)
ATGCTCATGACGCGGATGCGGCTGCCAGTCTGGTTGCTCCTGGATTTGGA
AGTAATAAGCTGGTCTCACGTCATGCGAGATGGCTGTGTGTATCCTCCTC
CTCCACCCATCCAGAGCTTCCCAGCCTCCCCTGCTGTCTACCCCCTCGTC
TCTACGCAGCCAACCTGTGTAGATTATAATGCAGAGTCCAACAGCAGGAA
GGAGGACACCAAATTGGGCTCGGGGCCAGCGAGGTAAAAAGACAACAAAC
AACAAGTGGCAGCCACACCACACAGAGCCCAACAGCAACAGCAAGAAGGG
AGCCGGAGGCAAGAAAAGAGTCTTACCGATCCCCTATCTTTGAAAACGCC
CACGTCAACAAAGGTTTTCGAAACCCCATGAGATGTGTCTCGCGAAACCT
TCCCAGGGGACAGTCCGTGGTTCAGTAACCGAGTCAAACACCACGGCGGC
AGAGGAAAGCAGGAGACCAGGGGCCCTGCGTATGTACGAGAGTCAGAAGT
TGCGCGAGGGGGAGAAATACTTAATAGATCGGCACGGGCTGTTAGGGGGC
AAAGGTGTACTCTGATACAGCTACCCCACGCACTCAATCTCATGGCGAAG
CACAAGCATAAGCATGATCAGTAGGTGGCTAAGTCACTGCGGGCCTTGTG
GGACGGGCAGCATCAGACACGACCAAACAAGCAGCCAGCCAAGCACGAAG
TCAAAAGGGAGGCAAAGCGACTTAAAGAGCTCTGTACAATATTCATACTC
CACCCTGCGAGATGCTTTACCTCAGCCTTAATTGCAGGCGTGCAGCTATG
ATCCCTTACATATGCCAATAGTTGTGTCAATTCTCGCTTTTACTCCTTCT
TAATTTCACTCCTTCCCCTCCCTCCTCCCCACCTCTCCCTACTCCAGACC
TGCCAACATGGCCCCGGCCTCCATCCCACCGGGCCCCAAGGCCAATCCGA
ATGTGGTGGCCGCGTTTTTCAATTCCTTCATGTCAGCAGGCGAGCAGAAA
TTTACCGTGGTCTCCTCCTTCTTTTCAAGCGGCTTGTTTCTGTTAGCCCT
CGCGTTGGTGAAGCAATATTCCAGGTGGGAAGGCAGTGAGGGAGGGAAGG
AGGGAGAGATGGAGGAGGGCAAAGGGAGTTAAGAAAGTGTAGATTAGCAG
ACATGACATTGTGGGCTAGCACAGCCCGTGGTGGTTGTCCACTTTCTCTG
TATTCTGAAGGAGGTATCTCGTCTCACGTACGCCCTTTCACCACCACCCT
ACTCCCTGTAAATCTTCTTTCCCACAACCACCAGCCTCAAAGAGCTCCAG
GACGCCCATGAAGGCCCTCCAGAGACTCAACAGCAGCAGCAGCAGCTGCT
GCAGCCGCTGCCGCAAAAGCAGCACTTATCGCAGTCTTTGCCCCAGGGGC
GGACGGGCACCCTGCTGACGGTCGATACGAAAGGCAGTGGCCTCGACAGA
AGTCGGTATGGAAGTAATGATCATCACCAGAGCAGGACGAGCATGACCTC
CCTCCCTACCCCTGCCCCCTCCCCCCCTCCATCCTCCTCCCCTTTCTTCT
CCACGATGGTGGGGGGGAATGCGCAGCCGACGACCCCGCGCAGCAGCAGC
AGTGTCCACACGACGACTACCATGACAACGCCATCCTCCACCACGGCCAT
GCCATCGAAAGGAAAGAAGAAGGGCAGCAGCAGCAGCAGCAGCAACAGCA
GCATCAGTGGTGGTGGTGCTGATGTAGGAGGAGGAGGGGTAGCGCTGAAT
GACGAGTTTCTGAGGCAGTTGATACGGTTGGTCCGAAAACTCATTCATTC
CTGGAAGACGGTAAGAGAGAGGGAGGGAAAGAGGGGGAAGGGAGGGGTCG
AAAGAGGGAGGATCATCGAAAGTAGATGTCAGCAATTTTGGATTTTTAAC
CTCTTTCTCCCCTCCCTCCCTCCCTTCCGCCTTCCCTGCAGCGCGAGGCT
GCTTGCCTTGGGGGGATGGTATTCCTGCTGCTGGCCCGGACGGCGTGTGA
CTTGCGGATGATCTCTCTGGTGGTGGGGGCCGAGCGTGCCATTGTGATGG
GAGACAGACCCTCGTTTCGTATTTCCCTTGCGCGGTTCTTGCGGTAAGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAAAAGGAAAGGAATAGGAAGGGC
GGAAGCCTACATGCACAACTCACCACAGTATCTGTTGACTTATCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCACTCAGTTTCATGGTACCTGTGGCCTGCGT
GAATGCGCTGCTAAAATACACCACACGCGAGCTCTCCTTGGGGCTACGGC
AGCGCCTTACAGAGCACCTGCAGGTAGGCCTCTCCCTCCCTCCCTCCCGC
CTTTGTTTTTTTCCTTCCACGCCCTCATATCTTCCCTCCCTCCCTTTTGC
ACAGGCCAAGTATATGCGGGGCTTTACCTTCTACTCGGTCACTACCCTCC
AAGGCCGATCCCGGTAGGGAGGGAGGGAGGGAGGGGGGGAAGGAGGACTA
TATCCACACCTGCTCGCCGGCCCGACCCATGCCTACACCTACTACTATAT
TGAGAAGCTTACTTTTTACTCAAGCCTACACGATAAATCATGCCTATATA
CATGTATAGGGAGATGGAGCAGCTCATGACAGTGGACGTCGACAAGTTCT
GCCTCAGCCTCACAGGCATGTCCTCCCTGCCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCTTCCACCCTCCCTCCCTCCCTTCGC
TTCCCTTCAGTTTTCTTCCCTTGCTCTCTCCCTCCCTCTCCCTCCTTGTG
TCTGTGCTACCTCATCTCCCTATCTCCCTCTCTCCCTCCCTCCCTCCCTA
GAGTTACTCTCCAACGTGCTCAAACCGACCCTGGATATTCTCATTTATGC
ACGACGGCTGCAGACCTCGGTTAGGACGGGAGGGAGGGAGGGAGGGAGGG
CGGGAGGGCGGGAGGGACGGAGGGACGGAGGCTCTCTTGTATTACATTCG
TCGGTCGGGCATGAAACGGAAGAGGGAGGGAGGGAAAGAGGGAGAGTTGA
AGGGAAGAAGGGAGGGATGGTAGGAAGAAAGATCTGTCTACTTCTTCTTC
TTCTTCTTCTTCTACCTCTTCTTCTTCTTCTCCTTCACGCTATACGTTTC
TCCCTCTTTCGCTTCTTTTTTTCCCTCCTCCTGTGGCAGGTGGGCTCTGT
CATTCCCCTGGCCATGGCGCTCTACCTCTTCTCCTCGGGCCTCGTGCTGA
CACGGACGAGGCGGCCGGCGGGCGATTATGCGGTCTGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGGGAGGGAGGGAG
GGCGACTACAGATTCATCTCCCGCCTGTTCGTCAGAAACGCAGACGCAAT
TCCCCTCAAAACTCAACAACTCCTTCCTCCCTTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGCTGCGG
TGCAACGGCGGGAGGGCGACTACAGATTTGTCTCTCACCGGCTAGTAACG
CACGCGGAAGAGGTGGCATTCTACGACGGCATTCACAGGGAGGGGAACCA
TGTGAAGGAAACTTTCCGGTCGCTTCTCGGTGAGGGCAAGGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGGAAAGGGAGGAATGCGTTCTACGCGAGATAT
TATTGACTGATTGCTACATTTTCCCCCTCACTCCCTCCCTCTCAAGACAC
CATCCGACGTGCGACCCGTTTCCGTTACTCCATGGACGTGTTAGACAGCG
TTATGGCCAAGTACATGGCCACGGCCCTCGGGTGGATTCTCCTCAACCGA
GTGGCCATGGTACGTAGGCAAGCCCTCCCTCCCTCCTTTCCTCCTTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCTTCCTTCCTTC
CTCCCTTCCTCCCTCCTTCTCTTCCTCCCTCCCTCCCTCCCTTCCTCCCT
CCCTTCCTCCCTCCCACCATCCCAAATCCGCCTTCCTACCCTTCCCCCTT
CGCCTGACCTCTTCGTTCCTCCTTCCCTCTTTCCCTCCCTCACTCCTTCC
TTGTTCCTCTCCTTCCCTCCCCCTCCTGCCTTTTTTCCCTCCTCACCTGC
CACAGCATCAAAAGCGAGTCGCCTCCCTCTCCTCCCTCTCCTCCCCCTCC
CTCTCCTCCTCCACCACCCCCCTTTCCTCCCCCCCTCCCTCCCCCCCTCC
CTCCCCCGCTACCTCCTATGAGTCCTTCCATCGCTCTGCAAGGATGATGT
TCAATTTCGCGCAAGCCCTAGCTGCCATCGTGCTCGCCGGGAGGTACGTC
TCCTCCCTCCCTACCTCCCTCCCTCCCTCCCTTCCTGCTTCCCTCCCTCC
CTCCCTCCCTCTCTTCCTGCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTGTGATACTCACTTTGATGGTCTTTGTTTTCCTCTCTTTCCCTCCCT
CCCTCCCTCCCTCTCTCCAGAGAGGCCACGAGGCTGACGGGCTACACGGA
CCGCGTACTGCGTCTCGAGAAAATTCTCGACAACCTCCACCAACGTAAGT
CCTCCCTCCCTCTCTCCTTCCCTCCCTCCCTCCCTCCTCCCTTCCCTCCC
TCCCTCTCTCAATCTCTTTCCTCCCCCCCTCCCTCCCTCCCTCCCCCCCT
CCCTCCCTCCCTCCCCTCAGAGGAGGAGCAAACCAGCCTGCAGGACCGTC
AAGATCAAGAGGAAGAGGAAGGCTCAGGCCTCGAAGGGGGTCGGAGGAGG
GGGAGGAGTAATGGGCACGTGCAGGAGGATTACGACGTCATCGAGCTTCA
AGGAGTGCCCATCGTGACGCCGCCCGTGAAGGGTAGGGAGGGAGGCAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGAAAGGCTTA
CCTATAAGTAACAACCGCACATCCAAAATCAGGCAAGAGCAACAGCAACG
GCAGCAGCAGTACTGCCATTACCGGCCTCAGCAGCAGTACTGGTGCAGGA
GAAGGAAGAGGAGGAGGAGGAGGACGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAGGACGAGGAGAGAAGGGGGAGTGGCTGACCTCGCCGCTGACCCTCC
GCATCGATCGAGGGATGCACGTCCTCGTTACGGGTCCAAACGGCAGTGGC
AAGTCTTCACTCTTCCGGTGCGTGGGTGCCCCCACCCCTCCCTCCCTCCC
TCCTTCCCTCCCTCCTTTCCTCCCTTCATCCCTCCCTCCCTCCCTCCGAA
AGATTAGTAGTCCATGGCCTGTCACACAGGAAAAGCTTACGAAACCTTCC
CTCCTCCCCTCCCTCCCTCCCTCCCGCAGGATGATCTGTGGCTTATGGCC
TGTCACGGAAGGGAGGCTTATCAAACCTCCTCGCTCCCAGCTCTTCTATA
TCCCCCAACGGCCTTATCTGCCCCTTGGCACCCTCAGGGATCAGGTAGGG
AGGGGGGGAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
AGGGACATTAGTTTTTCCTTGTCCGAGTCGTGTAGCTTGTTCTTCTTAGA
AGCGTATCTGTTCCATTTCTCCTCCCTCCCTCCCTCCCTCCCTCCACTCG
TTCGCGCTTAACCCTCCCTCCCTCCCTCCCTCCCTCCATCCATCCTTTCC
TCCCTCCCTCCCTCCATCCATCCATCCATCCATCCAGGTGATTTATCCCC
ACTCGGTCTCGGACATGGCCCAGGCGGGGAGGACGGATCAGGAGATAATG
GCTCTGCTGGCAGAGGTGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGG
GGGAGGAAAGAAAGAAGGAGGAAAGGAGTGTGAACGAGAATGAAAAATAT
TGCAATATTACTGAGAGGGAGAGAAAGTGAGGGGGTGAACGCTTTCTCTC
CTGCTTGAAAATTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCTTCCCTCACTTCCTCCCTTCCTTTTCTTCATCAGATCCAACTCT
CCTATCTGGCTCCGACTCCTGAAAGCAACCCGGCCGACGCTCCGCTCCCT
TCCTCCCTCCCTCCCTCCCTCGCTTCTTCCTTCCCTTCCTTCTCCTCCCT
TGCCAACCTCGTCACGCGCTCGGCCCTCTCTACCACGGACAAGGACGAGG
GCGGGAGGGAGGGCGGGAGGGAGGAGGCATTGGACCGTGTGTGTGACTGG
GACGAGACCCTATCGGGGGGGGAGAAGCAGCGCCTGGTGTTCGCCCGCTT
GCTCTACCATAGGCCTGCCTTTGCCATCTTGGATGAATGCACCAGCGCCG
TGTCGAGCGATATGGAGGTAGGGAGGGAAGGGGGGAGGGAGGGCGGGCGG
AAGGAGGACACTGGTGGTGGGTAGTGTGAGCGTAGGGCAGCGACTGTCGG
TAGCCGGCCTTCTCCATTCATCGACCTTCTCGGGTCGGCCTTAATGTCTG
TATTAACGTGACTGCATCGATGGAATTCCAGACAGCCTTTGTATACATGC
CTTAAATACCTATCTGTATATCGATACATACGATGTGGAGTGGTGGTATG
CTACCTCCCCTCCCTCCTTGCCTCGCATGCACCCCACCACGCATAAAAAA
AATCACCCCACCAAGCAATCGGGGATCACTCTTCATCCTACGCGTGGCCC
ATCGCCATCCCCTCACGTCCTCCCTCCCTCCTTCCCTTCCTCCCTCCCTC
CCTCGACCTAGGACCGGCTCTATACCCGTGCCAAACGCGATGGCATTACC
CTCCTGACTGTGGCCCACAGGAAGTCTTTGTGGAAGCACCACGAACACTT
GTTGGTGCTTGACGGGCGGGGAGGATGGTCGTTCAGGTGAGGAGGAGGGA
GGGATTAAGGACAGAGAGGCTGGGGCTCGTGCACGAGAACAATCCCGAAT
TAAAGCTCATGCCTTATCATTTTTATTTTACCCCATATCTAACATGCCGC
AATATAGGCCAATACGGGACGTGGAGCCGCAAGCTGCTGCAATCACAGAC
ATGTGAGCGGGAGGGATGAGAGAGGGGGAGGAACAAGAGAAGGCAAAGTG
TACTTAAAATTAAAGAAATGAAAGATATGTGAAGGACGGATGGGTCTTCT
CGTCGACCACAACGAAGCATTAATTTGAAC

Coding sequence (CDS) from alignment at chr19:781881..789160-

>NO19G02620.1 ID=NO19G02620.1|Name=NO19G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=3063bp|location=Sequence derived from alignment at chr19:781881..789160- (Nannochloropsis oceanica)
ATGCTCATGACGCGGATGCGGCTGCCAGTCTGGTTGCTCCTGGATTTGGA
AGTAATAAGCTGGTCTCACGTCATGCGAGATGGCTGTGTGTATCCTCCTC
CTCCACCCATCCAGAGCTTCCCAGCCTCCCCTGCTGTCTACCCCCTCGTC
TCTACGCAGCCAACCTGTGTAGATTATAATGCAGAGTCCAACAGCAGGAA
GGAGGACACCAAATTGGGCTCGGGGCCAGCGAGACCTGCCAACATGGCCC
CGGCCTCCATCCCACCGGGCCCCAAGGCCAATCCGAATGTGGTGGCCGCG
TTTTTCAATTCCTTCATGTCAGCAGGCGAGCAGAAATTTACCGTGGTCTC
CTCCTTCTTTTCAAGCGGCTTGTTTCTGTTAGCCCTCGCGTTGGTGAAGC
AATATTCCAGCCTCAAAGAGCTCCAGGACGCCCATGAAGGCCCTCCAGAG
ACTCAACAGCAGCAGCAGCAGCTGCTGCAGCCGCTGCCGCAAAAGCAGCA
CTTATCGCAGTCTTTGCCCCAGGGGCGGACGGGCACCCTGCTGACGGTCG
ATACGAAAGGCAGTGGCCTCGACAGAAGTCGGTATGGAAGTAATGATCAT
CACCAGAGCAGGACGAGCATGACCTCCCTCCCTACCCCTGCCCCCTCCCC
CCCTCCATCCTCCTCCCCTTTCTTCTCCACGATGGTGGGGGGGAATGCGC
AGCCGACGACCCCGCGCAGCAGCAGCAGTGTCCACACGACGACTACCATG
ACAACGCCATCCTCCACCACGGCCATGCCATCGAAAGGAAAGAAGAAGGG
CAGCAGCAGCAGCAGCAGCAACAGCAGCATCAGTGGTGGTGGTGCTGATG
TAGGAGGAGGAGGGGTAGCGCTGAATGACGAGTTTCTGAGGCAGTTGATA
CGGTTGGTCCGAAAACTCATTCATTCCTGGAAGACGCGCGAGGCTGCTTG
CCTTGGGGGGATGGTATTCCTGCTGCTGGCCCGGACGGCGTGTGACTTGC
GGATGATCTCTCTGGTGGTGGGGGCCGAGCGTGCCATTGTGATGGGAGAC
AGACCCTCGTTTCGTATTTCCCTTGCGCGGTTCTTGCGTTTCATGGTACC
TGTGGCCTGCGTGAATGCGCTGCTAAAATACACCACACGCGAGCTCTCCT
TGGGGCTACGGCAGCGCCTTACAGAGCACCTGCAGGCCAAGTATATGCGG
GGCTTTACCTTCTACTCGGTCACTACCCTCCAAGGCCGATCCCGGGAGAT
GGAGCAGCTCATGACAGTGGACGTCGACAAGTTCTGCCTCAGCCTCACAG
AGTTACTCTCCAACGTGCTCAAACCGACCCTGGATATTCTCATTTATGCA
CGACGGCTGCAGACCTCGGTGGGCTCTGTCATTCCCCTGGCCATGGCGCT
CTACCTCTTCTCCTCGGGCCTCGTGCTGACACGGACGAGGCGGCCGGCGG
GCGATTATGCGGCTGCGGTGCAACGGCGGGAGGGCGACTACAGATTTGTC
TCTCACCGGCTAGTAACGCACGCGGAAGAGGTGGCATTCTACGACGGCAT
TCACAGGGAGGGGAACCATGTGAAGGAAACTTTCCGGTCGCTTCTCGACA
CCATCCGACGTGCGACCCGTTTCCGTTACTCCATGGACGTGTTAGACAGC
GTTATGGCCAAGTACATGGCCACGGCCCTCGGGTGGATTCTCCTCAACCG
AGTGGCCATGCATCAAAAGCGAGTCGCCTCCCTCTCCTCCCTCTCCTCCC
CCTCCCTCTCCTCCTCCACCACCCCCCTTTCCTCCCCCCCTCCCTCCCCC
CCTCCCTCCCCCGCTACCTCCTATGAGTCCTTCCATCGCTCTGCAAGGAT
GATGTTCAATTTCGCGCAAGCCCTAGCTGCCATCGTGCTCGCCGGGAGAG
AGGCCACGAGGCTGACGGGCTACACGGACCGCGTACTGCGTCTCGAGAAA
ATTCTCGACAACCTCCACCAACAGGAGGAGCAAACCAGCCTGCAGGACCG
TCAAGATCAAGAGGAAGAGGAAGGCTCAGGCCTCGAAGGGGGTCGGAGGA
GGGGGAGGAGTAATGGGCACGTGCAGGAGGATTACGACGTCATCGAGCTT
CAAGGAGTGCCCATCGTGACGCCGCCCGTGAAGGGCAAGAGCAACAGCAA
CGGCAGCAGCAGTACTGCCATTACCGGCCTCAGCAGCAGTACTGGTGCAG
GAGAAGGAAGAGGAGGAGGAGGAGGACGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGACGAGGAGAGAAGGGGGAGTGGCTGACCTCGCCGCTGACCCT
CCGCATCGATCGAGGGATGCACGTCCTCGTTACGGGTCCAAACGGCAGTG
GCAAGTCTTCACTCTTCCGGATGATCTGTGGCTTATGGCCTGTCACGGAA
GGGAGGCTTATCAAACCTCCTCGCTCCCAGCTCTTCTATATCCCCCAACG
GCCTTATCTGCCCCTTGGCACCCTCAGGGATCAGGTGATTTATCCCCACT
CGGTCTCGGACATGGCCCAGGCGGGGAGGACGGATCAGGAGATAATGGCT
CTGCTGGCAGAGATCCAACTCTCCTATCTGGCTCCGACTCCTGAAAGCAA
CCCGGCCGACGCTCCGCTCCCTTCCTCCCTCCCTCCCTCCCTCGCTTCTT
CCTTCCCTTCCTTCTCCTCCCTTGCCAACCTCGTCACGCGCTCGGCCCTC
TCTACCACGGACAAGGACGAGGGCGGGAGGGAGGGCGGGAGGGAGGAGGC
ATTGGACCGTGTGTGTGACTGGGACGAGACCCTATCGGGGGGGGAGAAGC
AGCGCCTGGTGTTCGCCCGCTTGCTCTACCATAGGCCTGCCTTTGCCATC
TTGGATGAATGCACCAGCGCCGTGTCGAGCGATATGGAGGACCGGCTCTA
TACCCGTGCCAAACGCGATGGCATTACCCTCCTGACTGTGGCCCACAGGA
AGTCTTTGTGGAAGCACCACGAACACTTGTTGGTGCTTGACGGGCGGGGA
GGATGGTCGTTCAGGCCAATACGGGACGTGGAGCCGCAAGCTGCTGCAAT
CACAGACATGTGA

Synonyms

Publications