NO19G02600.5, NO19G02600.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02600.5
Unique NameNO19G02600.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2280
Alignment locationchr19:774201..777802 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:774201..777802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02600.5 vs.
Match: EWM23757.1 (o-acetylhomoserine o-acetylserine sulfhydrylase [Nannochloropsis gaditana])

HSP 1 Score: 785.4 bits (2027), Expect = 9.400e-224
Identity = 374/430 (86.98%), Postives = 405/430 (94.19%), Query Frame = 0 
Query:   24 YSSFSLAPGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEEFGNLYSRIMNPTNDVFEKRVAALEGGKMAVATSSGQAAQFLTIATIAEAGDNIVSACTLYGGTYCQFKVSLPRLGIQVKFAQDDDPASFDILVDDKTKALYVETMGNPKYNIPRFTELKAVAKKHGIPLIVDNTFGGCGAICRPIQHGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFWEVFGGEKSILGFNGAFAIRARVEGLRDFGACQNPFGSFLLLQGLETLSLRVERITHNAMHLARWLQTHRSVAWVRYPGLPDHESHELAKQYFRPGVFGPVLSFGVRGGREGGIIFINSCVLASHLANVGDAKTLVIHPASTTHQQLTEAEQEGSGVTADMIRVSVGIEHLDDIKDDFDQALEKAT 454
            + +  +  GQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEE GNLYSRIMNPTNDVFEKRVAALEGGKMAVAT+SGQAAQFL I T+A+AGDN VS+C+LYGGTYCQFKVSLPRLGI  +FA DDDPASF++LVD+KTKALYVET+GNPKYNIPRF ELK +A+KH IPLIVDNTFGGCGAICRPI+HGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFW+VFGGEKS+LGFNGAFA+RARVEGLRDFGACQNPFG+FLLLQGLETLSLR+ERI HNA+HLARWL+T  SVAWVRYPGLP+HES+E A+QYFRPG+FGPVLSFGV+GGR+ G IFINSCVLASHLANVGDAKTL+IHPASTTHQQLTE EQEGSGVTADMIRVSVGIEHL+DIK DF QAL KAT
Sbjct:   26 FETLQVHAGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEESGNLYSRIMNPTNDVFEKRVAALEGGKMAVATASGQAAQFLAIVTLAQAGDNFVSSCSLYGGTYCQFKVSLPRLGISARFAPDDDPASFEMLVDNKTKALYVETLGNPKYNIPRFKELKMLAEKHRIPLIVDNTFGGCGAICRPIEHGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFWDVFGGEKSVLGFNGAFAVRARVEGLRDFGACQNPFGAFLLLQGLETLSLRIERINHNALHLARWLKTCSSVAWVRYPGLPEHESYERARQYFRPGLFGPVLSFGVKGGRKAGTIFINSCVLASHLANVGDAKTLIIHPASTTHQQLTEREQEGSGVTADMIRVSVGIEHLEDIKADFAQALRKAT 455
The following BLAST results are available for this feature:
BLAST of NO19G02600.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23757.19.400e-22486.98o-acetylhomoserine o-acetylserine sulfhydrylase [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02600NO19G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02600.5NO19G02600.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02600.5.cds1NO19G02600.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds2NO19G02600.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds3NO19G02600.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds4NO19G02600.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds5NO19G02600.5.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds6NO19G02600.5.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds7NO19G02600.5.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds8NO19G02600.5.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds9NO19G02600.5.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02600.5.cds10NO19G02600.5.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02600.5 ID=NO19G02600.5|Name=NO19G02600.5|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp
CCACGGTAGGACTCACAGATTGTAACTTGTGGTATAAATCTAGAAATGCA
TGGATGCGCTAGCTGAGATAACGCTCTTCTTTAAACTATTTATGGGATGG
TTTTCCCTCATGTGTAATCATGTGACGTGGAGGAATTGTGCTCTGATAGA
GAGTATTGTTTGTGGGTATAGGTTGCACGTGATAATTTTAGGATTGTAGG
AAACTATAGGAAAAAGATGGGGACGTATGAGACAGTTCCTCCAAAATCGG
CGAGGCAAAGCCCCTGAGTCCTGACGGGCTGCATCATCACAAGCACCACA
CACACAAACACACACACACGTACACTACAATCATTGGCCAGGCCACACGG
TAGAGGCAGCATGGAACATAGAAGGATTTCTCCTTTGTAGCGAAGCTATA
TGCATATTGAGCCGCGGAGACTGTGTCGTCGTGTAACAGGAGGTTGTTGC
CCATCAAGCGCCAGGAAAATGTCAGCGACAGCCATGTGAGACATACATCA
CGTCCGTCGTCCATAACCTCGTGCATATTTCAATAGGACAGATAATCAAA
GCGAAAAGGGAGGAATGGAGCCGCTCTACAACGAAGCCTCAGGTGGCAAC
GGCGGCGGCTACAGCAGCGGTGGTAGAGGGGAAAAGGAGTACAGGTATGT
GACGCATGCATTTGAAATATGTGCGTCATAGAAAAGGACGTGAAGCCGTA
CGGTGCTTACTTGTCAGGTGTAGGGTACTGACAGCATCCGGCAAGACTTT
ACGCCCCTCCCCTCCTCTTCCTTACTCGTATTCGTACCTACTCACCCTTT
GCGCGCACAGGTTTGAGACGCTCCAAGTGCATGCAGGTATGTAATCATGT
GGTTTTCTTTTTTCCCTTCTTTCGTCCCCCATTTTTTTTAATACCTCACT
ACTCTTCATTCTCTCTTGCTCCAGGCCAGTCTCCCGACCCACACTCCCTC
TCTCGTGCCGTCCCCATATATGCCTCCTCCTCTTTCGTCTTTCGGGACCA
TGAGCACGGAGCCCGCCTCTTTGCCCTTGAAGAATTTGGAAACTTGTACA
GTCGGATCATGAATCCAACTAACGACGTGTTTGAAAAGAGGGTGGCAGCC
CTGGAGGGAGGAAAGATGGCAGTGGCCACTTCGTCAGGCCAAGCCGCACA
ATTCCTGACGATCGCGACGATTGCGGAGGCAGGGGACAACATTGTCTCGG
CCTGCACGTTGTACGGAGGAACCTATTGTCAGTTCAAGGTTTCGTTACCC
CGCCTTGGCATCCAAGTTAAGTTCGCCCAGGATGACGACCCCGCGTCATT
TGATATCCTCGTGGATGACAAAACTAAAGCACTTTATGTCGAGACGATGG
GCAATCCCAAGTATAACATTCCCCGTTTTACGGAACTCAAAGCCGTGGCA
AAGAAACATGGGATACCACTTATTGTCGATAACACCTTCGGCGGTTGCGG
GGCCATCTGCCGACCAATCCAGCACGGCGCGGACATCGTCGTCGAGAGCG
CTACCAAATGGATTGGGGGGCACGGGACGACGATTGGCGGGGTGATTGTG
GATGCTGGCACGTTTGACTGGAGCAATGGAAAATTTCCACTTTTTACTGA
CCCTTCTCCTGGCTATCACGGCCTCAAATTTTGGGAGGTGTTCGGCGGTG
AAAAGAGCATTTTGGGCTTCAACGGTGCGTTTGCCATCCGTGCCCGCGTC
GAGGGTCTCCGGGACTTTGGTGCATGTCAGAATCCATTCGGCTCCTTTTT
ACTCCTGCAGGGTCTGGAGACGCTCTCCTTGCGGGTTGAGCGCATTACAC
ACAACGCCATGCATCTGGCTCGCTGGCTGCAAACCCACCGAAGCGTTGCT
TGGGTTCGCTACCCAGGACTGCCTGACCACGAGTCGCATGAACTGGCCAA
GCAATATTTCAGACCAGGAGTGTTCGGTCCCGTGCTGAGCTTCGGGGTGA
GGGGTGGACGGGAAGGGGGCATCATTTTTATCAACAGCTGCGTACTCGCT
TCACACCTTGCCAACGTTGGCGACGCCAAAACATTGGTCATCCATCCGGC
TTCTACCACGCACCAGCAGCTCACCGAGGCAGAGCAGGAAGGGAGTGGGG
TGACAGCGGATATGATAAGGGTTTCGGTGGGTATCGAGCACCTGGACGAC
ATCAAAGATGACTTTGACCAGGCGCTGGAAAAGGCTACTAGAGCCTAGAA
GAAGCTGAGAGATAGGGCTTCACTGTAAGAGCAAGAACCATTAGACAGCT
AGAAAGAAGGAAAGAGGAAGTAACAAGATA
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protein sequence of NO19G02600.5

>NO19G02600.5-protein ID=NO19G02600.5-protein|Name=NO19G02600.5|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MQVCNHVVFFFPFFRPPFFLIPHYSSFSLAPGQSPDPHSLSRAVPIYASS
SFVFRDHEHGARLFALEEFGNLYSRIMNPTNDVFEKRVAALEGGKMAVAT
SSGQAAQFLTIATIAEAGDNIVSACTLYGGTYCQFKVSLPRLGIQVKFAQ
DDDPASFDILVDDKTKALYVETMGNPKYNIPRFTELKAVAKKHGIPLIVD
NTFGGCGAICRPIQHGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNG
KFPLFTDPSPGYHGLKFWEVFGGEKSILGFNGAFAIRARVEGLRDFGACQ
NPFGSFLLLQGLETLSLRVERITHNAMHLARWLQTHRSVAWVRYPGLPDH
ESHELAKQYFRPGVFGPVLSFGVRGGREGGIIFINSCVLASHLANVGDAK
TLVIHPASTTHQQLTEAEQEGSGVTADMIRVSVGIEHLDDIKDDFDQALE
KATRA*
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mRNA from alignment at chr19:774201..777802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02600.5 ID=NO19G02600.5|Name=NO19G02600.5|organism=Nannochloropsis oceanica|type=mRNA|length=3602bp|location=Sequence derived from alignment at chr19:774201..777802- (Nannochloropsis oceanica)
CCACGGTAGGACTCACAGATTGTAACTTGTGGTATAAATCTAGAAATGCA
TGGATGCGCTAGCTGAGATAACGCTCTTCTTTAAACTATTTATGGGATGG
TTTTCCCTCATGTGTAATCATGTGACGTGGAGGAATTGTGCTCTGATAGA
GAGTATTGTTTGTGGGTATAGGTTGCACGTGATAATTTTAGGATTGTAGG
AAACTATAGGAAAAAGATGGGGACGTATGAGACAGTTCCTCCAAAATCGG
CGAGGCAAAGCCCCTGAGTCCTGACGGGCTGCATCATCACAAGCACCACA
CACACAAACACACACACACGTACACTACAATCATTGGCCAGGCCACACGG
TAGAGGCAGCATGGAACATAGAAGGATTTCTCCTTTGTAGCGAAGCTATA
TGCATATTGAGCCGCGGAGACTGTGTCGTCGTGTAACAGGAGGTTGTTGC
CCATCAAGCGCCAGGAAAATGTCAGCGACAGCCATGTGAGACATACATCA
CGTCCGTCGTCCATAACCTCGTGCATATTTCAATAGGACAGATAATCAAA
GCGAAAAGGGAGGAATGGAGCCGCTCTACAACGAAGCCTCAGGTGGCAAC
GGCGGCGGCTACAGCAGCGGTGGTAGAGGGGAAAAGGAGTACAGGTATGT
GACGCATGCATTTGAAATATGTGCGTCATAGAAAAGGACGTGAAGCCGTA
CGGTGCTTACTTGTCAGGTGTAGGGTACTGACAGCATCCGGCAAGACTTT
ACGCCCCTCCCCTCCTCTTCCTTACTCGTATTCGTACCTACTCACCCTTT
GCGCGCACAGGTTTGAGACGCTCCAAGTGCATGCAGGTATGTAATCATGT
GGTTTTCTTTTTTCCCTTCTTTCGTCCCCCATTTTTTTTAATACCTCACT
ACTCTTCATTCTCTCTTGCTCCAGGCCAGTCTCCCGACCCACACTCCCTC
TCTCGTGCCGTCCCCATATATGCCTCCTCCTCTTTCGTCTTTCGGGACCA
TGAGCACGGAGCCCGCCTCTTTGCCCTTGAAGAATTTGGAAACTTGTACA
GTCGGTAAGCTCTTGGCGAGTTTAAATGTTTATAAGAGTAATCTTTTCAT
CCGTCAAATACCCTGAAGTCTCCTTTGTCTCCCTCACTTTCCCTCCTGGT
CCTGCCTTTGCGCGATCTTAGTCGTATGTAAACAGTATCATCGCATCAAA
TGTCTTATTTACCCTCCTATTTATTTTTTCTTTCTTGGTTTACACTAGGA
TCATGAATCCAACTAACGACGTGTTTGAAAAGAGGGTGGCAGCCCTGGAG
GGAGGAAAGATGGCAGTGGCCACTTCGTCAGGCCAAGCCGCACAATTCCT
GACGATCGCGACGATTGCGGAGGCAGGGGACAACATTGGTGAGAATTGAT
TTTTTAAAAACGAGGGGATTAAGGGAAGGAGGGAGATTAGGATGAGGCTG
TAAAGCTCGGCTCTCGTACCGTATTGTACTTCGCAGCAAGGCCACTTGCT
CAAACAAGGACCCTTCTATATTTTTGCTGTCCTTGCACCACTTGGCTCCA
ATATACGATAACCTTTGACCCGTGCTTTTCAAACGTTATGAAACATACCT
ACAAAGTCTCGGCCTGCACGTTGTACGGAGGAACCTATTGTCAGTTCAAG
GTTTCGTTACCCCGCCTTGGCATCCAAGTTAAGTTCGCCCAGGATGACGA
CCCCGCGTCATTTGATATCCTCGTGGATGACAAAACTAAAGCACTTTATG
TCGAGACGATGGGCAATCCCAAGGTATGTATGGTGGTAGTTGGACTTCTT
AAACTCGCATTCAGACGTTAGGGCTTGGCGAGAGTGTACGATTGTCCTGT
AGCCATGTCGTCTAATGTCCTCCTTCCTTTCTATACCGACAGTATAACAT
TCCCCGTTTTACGGAACTCAAAGCCGTGGCAAAGAAACATGGGATACCAC
TTATTGTCGATAACACCTTCGGCGGTTGCGGGGCCATCTGCCGACCAATC
CAGGTACGTTCGAGTGTGTGAATGAGGGTACTCGAAAGGAAATTAAGGAT
AGAGTAAAATTCTTGGACAATGTTTGTTGGTTGTGTGGGCAAGCCCAACT
GTTGGCTAAAAATATGCATGTATTGCATGGTTTGGCCTTCTTCATCAGCC
CTCTCACTCACATATATGTGCACACACAATAGCACGGCGCGGACATCGTC
GTCGAGAGCGCTACCAAATGGATTGGGGGGCACGGGACGACGATTGGCGG
GGTGATTGTGGATGCTGGCACGTTTGACTGGAGCAATGGTATGAAATAAA
ATGAAAGGAAACGAAAAAGGGCGACGAGTTGGCAGGGATTCACCGACCGA
TGGCATGTGATTTTGATAGACAAAATATGCACCCATCTCTGTACACAATC
GATATAGGAAAATTTCCACTTTTTACTGACCCTTCTCCTGGCTATCACGG
CCTCAAATTTTGGGAGGTGTTCGGCGGTGAAAAGGTATGCATATCTTGTG
TTTTAACTTATTCTAAGAGGCTCAGTGAAGTAGTCATATCTGATAAACTA
CTATGTGCACCTCTCCAGTATTGACCTCGGTAAATTTCACCACACATGCA
CGACAGAGCATTTTGGGCTTCAACGGTGCGTTTGCCATCCGTGCCCGCGT
CGAGGGTCTCCGGGACTTTGGTGCATGTCAGAATCCATTCGGCTCCTTTT
TACTCCTGCAGGTATGCTTCTATGGTCCAAAATATCTCCGATAAAAGGGC
GTGAATGGCTCTTTCTTCTCCTTTTTTTAAATCTCACTTACTTCACATGT
TTCCATACACGTAGGGTCTGGAGACGCTCTCCTTGCGGGTTGAGCGCATT
ACACACAACGCCATGCATCTGGCTCGCTGGCTGCAAACCCACCGAAGGTG
AGATTTGTTTGCATTCATACTCATGTCTACGTGTGCCGAGCTAACGTTAC
TATTGCGCCTTAAACCTTGATCCACACAATAGAGTCATGAAAAGTAGTCC
TCTTCTAATGTTCCTTTCATCCTTCCCTGCAGCGTTGCTTGGGTTCGCTA
CCCAGGACTGCCTGACCACGAGTCGCATGAACTGGCCAAGCAATATTTCA
GACCAGGAGTGTTCGGTCCCGTGCTGAGCTTCGGGGTGAGGGGTGGACGG
GAAGGTAAGGATGCGCCAGTGTATGTTTAAAACTCTCTGTGTCGGTTCAT
GTGTTTCTGTCTCTCCGTCTGGGCCAACGTCACGTACGAGACGCGGAATG
GTTTACTCGAATTTCAAACCAATACGCACATACACAGGGGGCATCATTTT
TATCAACAGCTGCGTACTCGCTTCACACCTTGCCAACGTTGGCGACGCCA
AAACATTGGTCATCCATCCGGCTTCTACCACGCACCAGCAGCTCACCGAG
GCAGAGCAGGAAGGGAGTGGGGTGACAGCGGATATGATAAGGGTTTCGGT
GGGTATCGAGCACCTGGACGACATCAAAGATGACTTTGACCAGGCGCTGG
AAAAGGCTACTAGAGCCTAGAAGAAGCTGAGAGATAGGGCTTCACTGTAA
GAGCAAGAACCATTAGACAGCTAGAAAGAAGGAAAGAGGAAGTAACAAGA
TA
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Coding sequence (CDS) from alignment at chr19:774201..777802-

>NO19G02600.5 ID=NO19G02600.5|Name=NO19G02600.5|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr19:774201..777802- (Nannochloropsis oceanica)
ATGCAGGTATGTAATCATGTGGTTTTCTTTTTTCCCTTCTTTCGTCCCCC
ATTTTTTTTAATACCTCACTACTCTTCATTCTCTCTTGCTCCAGGCCAGT
CTCCCGACCCACACTCCCTCTCTCGTGCCGTCCCCATATATGCCTCCTCC
TCTTTCGTCTTTCGGGACCATGAGCACGGAGCCCGCCTCTTTGCCCTTGA
AGAATTTGGAAACTTGTACAGTCGGATCATGAATCCAACTAACGACGTGT
TTGAAAAGAGGGTGGCAGCCCTGGAGGGAGGAAAGATGGCAGTGGCCACT
TCGTCAGGCCAAGCCGCACAATTCCTGACGATCGCGACGATTGCGGAGGC
AGGGGACAACATTGTCTCGGCCTGCACGTTGTACGGAGGAACCTATTGTC
AGTTCAAGGTTTCGTTACCCCGCCTTGGCATCCAAGTTAAGTTCGCCCAG
GATGACGACCCCGCGTCATTTGATATCCTCGTGGATGACAAAACTAAAGC
ACTTTATGTCGAGACGATGGGCAATCCCAAGTATAACATTCCCCGTTTTA
CGGAACTCAAAGCCGTGGCAAAGAAACATGGGATACCACTTATTGTCGAT
AACACCTTCGGCGGTTGCGGGGCCATCTGCCGACCAATCCAGCACGGCGC
GGACATCGTCGTCGAGAGCGCTACCAAATGGATTGGGGGGCACGGGACGA
CGATTGGCGGGGTGATTGTGGATGCTGGCACGTTTGACTGGAGCAATGGA
AAATTTCCACTTTTTACTGACCCTTCTCCTGGCTATCACGGCCTCAAATT
TTGGGAGGTGTTCGGCGGTGAAAAGAGCATTTTGGGCTTCAACGGTGCGT
TTGCCATCCGTGCCCGCGTCGAGGGTCTCCGGGACTTTGGTGCATGTCAG
AATCCATTCGGCTCCTTTTTACTCCTGCAGGGTCTGGAGACGCTCTCCTT
GCGGGTTGAGCGCATTACACACAACGCCATGCATCTGGCTCGCTGGCTGC
AAACCCACCGAAGCGTTGCTTGGGTTCGCTACCCAGGACTGCCTGACCAC
GAGTCGCATGAACTGGCCAAGCAATATTTCAGACCAGGAGTGTTCGGTCC
CGTGCTGAGCTTCGGGGTGAGGGGTGGACGGGAAGGGGGCATCATTTTTA
TCAACAGCTGCGTACTCGCTTCACACCTTGCCAACGTTGGCGACGCCAAA
ACATTGGTCATCCATCCGGCTTCTACCACGCACCAGCAGCTCACCGAGGC
AGAGCAGGAAGGGAGTGGGGTGACAGCGGATATGATAAGGGTTTCGGTGG
GTATCGAGCACCTGGACGACATCAAAGATGACTTTGACCAGGCGCTGGAA
AAGGCTACTAGAGCCTAG
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Synonyms
Publications