|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr19 | genome | chr19:774201..777802 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G02600.2 vs.
Match: EWM23757.1 (o-acetylhomoserine o-acetylserine sulfhydrylase [Nannochloropsis gaditana]) HSP 1 Score: 804.3 bits (2076), Expect = 2.100e-229 Identity = 383/432 (88.66%), Postives = 412/432 (95.37%), Query Frame = 0
Query: 51 HRFETLQVHAGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEEFGNLYSRIMNPTNDVFEKRVAALEGGKMAVATSSGQAAQFLTIATIAEAGDNIVSACTLYGGTYCQFKVSLPRLGIQVKFAQDDDPASFDILVDDKTKALYVETMGNPKYNIPRFTELKAVAKKHGIPLIVDNTFGGCGAICRPIQHGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFWEVFGGEKSILGFNGAFAIRARVEGLRDFGACQNPFGSFLLLQGLETLSLRVERITHNAMHLARWLQTHRSVAWVRYPGLPDHESHELAKQYFRPGVFGPVLSFGVRGGREGGIIFINSCVLASHLANVGDAKTLVIHPASTTHQQLTEAEQEGSGVTADMIRVSVGIEHLDDIKDDFDQALEKAT 483
+RFETLQVHAGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEE GNLYSRIMNPTNDVFEKRVAALEGGKMAVAT+SGQAAQFL I T+A+AGDN VS+C+LYGGTYCQFKVSLPRLGI +FA DDDPASF++LVD+KTKALYVET+GNPKYNIPRF ELK +A+KH IPLIVDNTFGGCGAICRPI+HGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFW+VFGGEKS+LGFNGAFA+RARVEGLRDFGACQNPFG+FLLLQGLETLSLR+ERI HNA+HLARWL+T SVAWVRYPGLP+HES+E A+QYFRPG+FGPVLSFGV+GGR+ G IFINSCVLASHLANVGDAKTL+IHPASTTHQQLTE EQEGSGVTADMIRVSVGIEHL+DIK DF QAL KAT
Sbjct: 24 YRFETLQVHAGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEESGNLYSRIMNPTNDVFEKRVAALEGGKMAVATASGQAAQFLAIVTLAQAGDNFVSSCSLYGGTYCQFKVSLPRLGISARFAPDDDPASFEMLVDNKTKALYVETLGNPKYNIPRFKELKMLAEKHRIPLIVDNTFGGCGAICRPIEHGADIVVESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFWDVFGGEKSVLGFNGAFAVRARVEGLRDFGACQNPFGAFLLLQGLETLSLRIERINHNALHLARWLKTCSSVAWVRYPGLPEHESYERARQYFRPGLFGPVLSFGVKGGRKAGTIFINSCVLASHLANVGDAKTLIIHPASTTHQQLTEREQEGSGVTADMIRVSVGIEHLEDIKADFAQALRKAT 455
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G02600.2 ID=NO19G02600.2|Name=NO19G02600.2|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp
CCACGGTAGGACTCACAGATTGTAACTTGTGGTATAAATCTAGAAATGCA
TGGATGCGCTAGCTGAGATAACGCTCTTCTTTAAACTATTTATGGGATGG
TTTTCCCTCATGTGTAATCATGTGACGTGGAGGAATTGTGCTCTGATAGA
GAGTATTGTTTGTGGGTATAGGTTGCACGTGATAATTTTAGGATTGTAGG
AAACTATAGGAAAAAGATGGGGACGTATGAGACAGTTCCTCCAAAATCGG
CGAGGCAAAGCCCCTGAGTCCTGACGGGCTGCATCATCACAAGCACCACA
CACACAAACACACACACACGTACACTACAATCATTGGCCAGGCCACACGG
TAGAGGCAGCATGGAACATAGAAGGATTTCTCCTTTGTAGCGAAGCTATA
TGCATATTGAGCCGCGGAGACTGTGTCGTCGTGTAACAGGAGGTTGTTGC
CCATCAAGCGCCAGGAAAATGTCAGCGACAGCCATGTGAGACATACATCA
CGTCCGTCGTCCATAACCTCGTGCATATTTCAATAGGACAGATAATCAAA
GCGAAAAGGGAGGAATGGAGCCGCTCTACAACGAAGCCTCAGGTGGCAAC
GGCGGCGGCTACAGCAGCGGTGGTAGAGGGGAAAAGGAGTACAGGTATGT
GACGCATGCATTTGAAATATGTGCGTCATAGAAAAGGACGTGAAGCCGTA
CGGTGCTTACTTGTCAGGTGTAGGGTACTGACAGCATCCGGCAAGACTTT
ACGCCCCTCCCCTCCTCTTCCTTACTCGTATTCGTACCTACTCACCCTTT
GCGCGCACAGGTTTGAGACGCTCCAAGTGCATGCAGGCCAGTCTCCCGAC
CCACACTCCCTCTCTCGTGCCGTCCCCATATATGCCTCCTCCTCTTTCGT
CTTTCGGGACCATGAGCACGGAGCCCGCCTCTTTGCCCTTGAAGAATTTG
GAAACTTGTACAGTCGGATCATGAATCCAACTAACGACGTGTTTGAAAAG
AGGGTGGCAGCCCTGGAGGGAGGAAAGATGGCAGTGGCCACTTCGTCAGG
CCAAGCCGCACAATTCCTGACGATCGCGACGATTGCGGAGGCAGGGGACA
ACATTGTCTCGGCCTGCACGTTGTACGGAGGAACCTATTGTCAGTTCAAG
GTTTCGTTACCCCGCCTTGGCATCCAAGTTAAGTTCGCCCAGGATGACGA
CCCCGCGTCATTTGATATCCTCGTGGATGACAAAACTAAAGCACTTTATG
TCGAGACGATGGGCAATCCCAAGTATAACATTCCCCGTTTTACGGAACTC
AAAGCCGTGGCAAAGAAACATGGGATACCACTTATTGTCGATAACACCTT
CGGCGGTTGCGGGGCCATCTGCCGACCAATCCAGCACGGCGCGGACATCG
TCGTCGAGAGCGCTACCAAATGGATTGGGGGGCACGGGACGACGATTGGC
GGGGTGATTGTGGATGCTGGCACGTTTGACTGGAGCAATGGAAAATTTCC
ACTTTTTACTGACCCTTCTCCTGGCTATCACGGCCTCAAATTTTGGGAGG
TGTTCGGCGGTGAAAAGAGCATTTTGGGCTTCAACGGTGCGTTTGCCATC
CGTGCCCGCGTCGAGGGTCTCCGGGACTTTGGTGCATGTCAGAATCCATT
CGGCTCCTTTTTACTCCTGCAGGGTCTGGAGACGCTCTCCTTGCGGGTTG
AGCGCATTACACACAACGCCATGCATCTGGCTCGCTGGCTGCAAACCCAC
CGAAGCGTTGCTTGGGTTCGCTACCCAGGACTGCCTGACCACGAGTCGCA
TGAACTGGCCAAGCAATATTTCAGACCAGGAGTGTTCGGTCCCGTGCTGA
GCTTCGGGGTGAGGGGTGGACGGGAAGGGGGCATCATTTTTATCAACAGC
TGCGTACTCGCTTCACACCTTGCCAACGTTGGCGACGCCAAAACATTGGT
CATCCATCCGGCTTCTACCACGCACCAGCAGCTCACCGAGGCAGAGCAGG
AAGGGAGTGGGGTGACAGCGGATATGATAAGGGTTTCGGTGGGTATCGAG
CACCTGGACGACATCAAAGATGACTTTGACCAGGCGCTGGAAAAGGCTAC
TAGAGCCTAGAAGAAGCTGAGAGATAGGGCTTCACTGTAAGAGCAAGAAC
CATTAGACAGCTAGAAAGAAGGAAAGAGGAAGTAACAAGATA back to topprotein sequence of NO19G02600.2 >NO19G02600.2-protein ID=NO19G02600.2-protein|Name=NO19G02600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MHLKYVRHRKGREAVRCLLVRCRVLTASGKTLRPSPPLPYSYSYLLTLCA
HRFETLQVHAGQSPDPHSLSRAVPIYASSSFVFRDHEHGARLFALEEFGN
LYSRIMNPTNDVFEKRVAALEGGKMAVATSSGQAAQFLTIATIAEAGDNI
VSACTLYGGTYCQFKVSLPRLGIQVKFAQDDDPASFDILVDDKTKALYVE
TMGNPKYNIPRFTELKAVAKKHGIPLIVDNTFGGCGAICRPIQHGADIVV
ESATKWIGGHGTTIGGVIVDAGTFDWSNGKFPLFTDPSPGYHGLKFWEVF
GGEKSILGFNGAFAIRARVEGLRDFGACQNPFGSFLLLQGLETLSLRVER
ITHNAMHLARWLQTHRSVAWVRYPGLPDHESHELAKQYFRPGVFGPVLSF
GVRGGREGGIIFINSCVLASHLANVGDAKTLVIHPASTTHQQLTEAEQEG
SGVTADMIRVSVGIEHLDDIKDDFDQALEKATRA* back to topmRNA from alignment at chr19:774201..777802- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G02600.2 ID=NO19G02600.2|Name=NO19G02600.2|organism=Nannochloropsis oceanica|type=mRNA|length=3602bp|location=Sequence derived from alignment at chr19:774201..777802- (Nannochloropsis oceanica)
CCACGGTAGGACTCACAGATTGTAACTTGTGGTATAAATCTAGAAATGCA
TGGATGCGCTAGCTGAGATAACGCTCTTCTTTAAACTATTTATGGGATGG
TTTTCCCTCATGTGTAATCATGTGACGTGGAGGAATTGTGCTCTGATAGA
GAGTATTGTTTGTGGGTATAGGTTGCACGTGATAATTTTAGGATTGTAGG
AAACTATAGGAAAAAGATGGGGACGTATGAGACAGTTCCTCCAAAATCGG
CGAGGCAAAGCCCCTGAGTCCTGACGGGCTGCATCATCACAAGCACCACA
CACACAAACACACACACACGTACACTACAATCATTGGCCAGGCCACACGG
TAGAGGCAGCATGGAACATAGAAGGATTTCTCCTTTGTAGCGAAGCTATA
TGCATATTGAGCCGCGGAGACTGTGTCGTCGTGTAACAGGAGGTTGTTGC
CCATCAAGCGCCAGGAAAATGTCAGCGACAGCCATGTGAGACATACATCA
CGTCCGTCGTCCATAACCTCGTGCATATTTCAATAGGACAGATAATCAAA
GCGAAAAGGGAGGAATGGAGCCGCTCTACAACGAAGCCTCAGGTGGCAAC
GGCGGCGGCTACAGCAGCGGTGGTAGAGGGGAAAAGGAGTACAGGTATGT
GACGCATGCATTTGAAATATGTGCGTCATAGAAAAGGACGTGAAGCCGTA
CGGTGCTTACTTGTCAGGTGTAGGGTACTGACAGCATCCGGCAAGACTTT
ACGCCCCTCCCCTCCTCTTCCTTACTCGTATTCGTACCTACTCACCCTTT
GCGCGCACAGGTTTGAGACGCTCCAAGTGCATGCAGGTATGTAATCATGT
GGTTTTCTTTTTTCCCTTCTTTCGTCCCCCATTTTTTTTAATACCTCACT
ACTCTTCATTCTCTCTTGCTCCAGGCCAGTCTCCCGACCCACACTCCCTC
TCTCGTGCCGTCCCCATATATGCCTCCTCCTCTTTCGTCTTTCGGGACCA
TGAGCACGGAGCCCGCCTCTTTGCCCTTGAAGAATTTGGAAACTTGTACA
GTCGGTAAGCTCTTGGCGAGTTTAAATGTTTATAAGAGTAATCTTTTCAT
CCGTCAAATACCCTGAAGTCTCCTTTGTCTCCCTCACTTTCCCTCCTGGT
CCTGCCTTTGCGCGATCTTAGTCGTATGTAAACAGTATCATCGCATCAAA
TGTCTTATTTACCCTCCTATTTATTTTTTCTTTCTTGGTTTACACTAGGA
TCATGAATCCAACTAACGACGTGTTTGAAAAGAGGGTGGCAGCCCTGGAG
GGAGGAAAGATGGCAGTGGCCACTTCGTCAGGCCAAGCCGCACAATTCCT
GACGATCGCGACGATTGCGGAGGCAGGGGACAACATTGGTGAGAATTGAT
TTTTTAAAAACGAGGGGATTAAGGGAAGGAGGGAGATTAGGATGAGGCTG
TAAAGCTCGGCTCTCGTACCGTATTGTACTTCGCAGCAAGGCCACTTGCT
CAAACAAGGACCCTTCTATATTTTTGCTGTCCTTGCACCACTTGGCTCCA
ATATACGATAACCTTTGACCCGTGCTTTTCAAACGTTATGAAACATACCT
ACAAAGTCTCGGCCTGCACGTTGTACGGAGGAACCTATTGTCAGTTCAAG
GTTTCGTTACCCCGCCTTGGCATCCAAGTTAAGTTCGCCCAGGATGACGA
CCCCGCGTCATTTGATATCCTCGTGGATGACAAAACTAAAGCACTTTATG
TCGAGACGATGGGCAATCCCAAGGTATGTATGGTGGTAGTTGGACTTCTT
AAACTCGCATTCAGACGTTAGGGCTTGGCGAGAGTGTACGATTGTCCTGT
AGCCATGTCGTCTAATGTCCTCCTTCCTTTCTATACCGACAGTATAACAT
TCCCCGTTTTACGGAACTCAAAGCCGTGGCAAAGAAACATGGGATACCAC
TTATTGTCGATAACACCTTCGGCGGTTGCGGGGCCATCTGCCGACCAATC
CAGGTACGTTCGAGTGTGTGAATGAGGGTACTCGAAAGGAAATTAAGGAT
AGAGTAAAATTCTTGGACAATGTTTGTTGGTTGTGTGGGCAAGCCCAACT
GTTGGCTAAAAATATGCATGTATTGCATGGTTTGGCCTTCTTCATCAGCC
CTCTCACTCACATATATGTGCACACACAATAGCACGGCGCGGACATCGTC
GTCGAGAGCGCTACCAAATGGATTGGGGGGCACGGGACGACGATTGGCGG
GGTGATTGTGGATGCTGGCACGTTTGACTGGAGCAATGGTATGAAATAAA
ATGAAAGGAAACGAAAAAGGGCGACGAGTTGGCAGGGATTCACCGACCGA
TGGCATGTGATTTTGATAGACAAAATATGCACCCATCTCTGTACACAATC
GATATAGGAAAATTTCCACTTTTTACTGACCCTTCTCCTGGCTATCACGG
CCTCAAATTTTGGGAGGTGTTCGGCGGTGAAAAGGTATGCATATCTTGTG
TTTTAACTTATTCTAAGAGGCTCAGTGAAGTAGTCATATCTGATAAACTA
CTATGTGCACCTCTCCAGTATTGACCTCGGTAAATTTCACCACACATGCA
CGACAGAGCATTTTGGGCTTCAACGGTGCGTTTGCCATCCGTGCCCGCGT
CGAGGGTCTCCGGGACTTTGGTGCATGTCAGAATCCATTCGGCTCCTTTT
TACTCCTGCAGGTATGCTTCTATGGTCCAAAATATCTCCGATAAAAGGGC
GTGAATGGCTCTTTCTTCTCCTTTTTTTAAATCTCACTTACTTCACATGT
TTCCATACACGTAGGGTCTGGAGACGCTCTCCTTGCGGGTTGAGCGCATT
ACACACAACGCCATGCATCTGGCTCGCTGGCTGCAAACCCACCGAAGGTG
AGATTTGTTTGCATTCATACTCATGTCTACGTGTGCCGAGCTAACGTTAC
TATTGCGCCTTAAACCTTGATCCACACAATAGAGTCATGAAAAGTAGTCC
TCTTCTAATGTTCCTTTCATCCTTCCCTGCAGCGTTGCTTGGGTTCGCTA
CCCAGGACTGCCTGACCACGAGTCGCATGAACTGGCCAAGCAATATTTCA
GACCAGGAGTGTTCGGTCCCGTGCTGAGCTTCGGGGTGAGGGGTGGACGG
GAAGGTAAGGATGCGCCAGTGTATGTTTAAAACTCTCTGTGTCGGTTCAT
GTGTTTCTGTCTCTCCGTCTGGGCCAACGTCACGTACGAGACGCGGAATG
GTTTACTCGAATTTCAAACCAATACGCACATACACAGGGGGCATCATTTT
TATCAACAGCTGCGTACTCGCTTCACACCTTGCCAACGTTGGCGACGCCA
AAACATTGGTCATCCATCCGGCTTCTACCACGCACCAGCAGCTCACCGAG
GCAGAGCAGGAAGGGAGTGGGGTGACAGCGGATATGATAAGGGTTTCGGT
GGGTATCGAGCACCTGGACGACATCAAAGATGACTTTGACCAGGCGCTGG
AAAAGGCTACTAGAGCCTAGAAGAAGCTGAGAGATAGGGCTTCACTGTAA
GAGCAAGAACCATTAGACAGCTAGAAAGAAGGAAAGAGGAAGTAACAAGA
TA back to topCoding sequence (CDS) from alignment at chr19:774201..777802- >NO19G02600.2 ID=NO19G02600.2|Name=NO19G02600.2|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr19:774201..777802- (Nannochloropsis oceanica)
ATGCATTTGAAATATGTGCGTCATAGAAAAGGACGTGAAGCCGTACGGTG
CTTACTTGTCAGGTGTAGGGTACTGACAGCATCCGGCAAGACTTTACGCC
CCTCCCCTCCTCTTCCTTACTCGTATTCGTACCTACTCACCCTTTGCGCG
CACAGGTTTGAGACGCTCCAAGTGCATGCAGGCCAGTCTCCCGACCCACA
CTCCCTCTCTCGTGCCGTCCCCATATATGCCTCCTCCTCTTTCGTCTTTC
GGGACCATGAGCACGGAGCCCGCCTCTTTGCCCTTGAAGAATTTGGAAAC
TTGTACAGTCGGATCATGAATCCAACTAACGACGTGTTTGAAAAGAGGGT
GGCAGCCCTGGAGGGAGGAAAGATGGCAGTGGCCACTTCGTCAGGCCAAG
CCGCACAATTCCTGACGATCGCGACGATTGCGGAGGCAGGGGACAACATT
GTCTCGGCCTGCACGTTGTACGGAGGAACCTATTGTCAGTTCAAGGTTTC
GTTACCCCGCCTTGGCATCCAAGTTAAGTTCGCCCAGGATGACGACCCCG
CGTCATTTGATATCCTCGTGGATGACAAAACTAAAGCACTTTATGTCGAG
ACGATGGGCAATCCCAAGTATAACATTCCCCGTTTTACGGAACTCAAAGC
CGTGGCAAAGAAACATGGGATACCACTTATTGTCGATAACACCTTCGGCG
GTTGCGGGGCCATCTGCCGACCAATCCAGCACGGCGCGGACATCGTCGTC
GAGAGCGCTACCAAATGGATTGGGGGGCACGGGACGACGATTGGCGGGGT
GATTGTGGATGCTGGCACGTTTGACTGGAGCAATGGAAAATTTCCACTTT
TTACTGACCCTTCTCCTGGCTATCACGGCCTCAAATTTTGGGAGGTGTTC
GGCGGTGAAAAGAGCATTTTGGGCTTCAACGGTGCGTTTGCCATCCGTGC
CCGCGTCGAGGGTCTCCGGGACTTTGGTGCATGTCAGAATCCATTCGGCT
CCTTTTTACTCCTGCAGGGTCTGGAGACGCTCTCCTTGCGGGTTGAGCGC
ATTACACACAACGCCATGCATCTGGCTCGCTGGCTGCAAACCCACCGAAG
CGTTGCTTGGGTTCGCTACCCAGGACTGCCTGACCACGAGTCGCATGAAC
TGGCCAAGCAATATTTCAGACCAGGAGTGTTCGGTCCCGTGCTGAGCTTC
GGGGTGAGGGGTGGACGGGAAGGGGGCATCATTTTTATCAACAGCTGCGT
ACTCGCTTCACACCTTGCCAACGTTGGCGACGCCAAAACATTGGTCATCC
ATCCGGCTTCTACCACGCACCAGCAGCTCACCGAGGCAGAGCAGGAAGGG
AGTGGGGTGACAGCGGATATGATAAGGGTTTCGGTGGGTATCGAGCACCT
GGACGACATCAAAGATGACTTTGACCAGGCGCTGGAAAAGGCTACTAGAG
CCTAG back to top
|