NO19G02590.3, NO19G02590.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02590.3
Unique Name	NO19G02590.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2140
Alignment location	chr19:770486..774189 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:770486..774189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G02590.3 vs.
Match: WP_071516804.1 (molecular chaperone DnaJ [Geitlerinema sp. PCC 9228])

HSP 1 Score: 69.7 bits (169), Expect = 3.100e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0

Query:  157 YQILAVSPNVTMREISQAYRRIARVSHPDK---DKSREGEFKAATEAYKILSSPELRVRYHYYGRLWDE 223
            YQIL VS N +  EI +AYRR+AR  HPD    D+  E  FK  +EAY++LS PE R +Y  +GR W +
Sbjct:   10 YQILGVSKNASTDEIKKAYRRLARKYHPDMNPGDREAEARFKEVSEAYEVLSDPEKRKKYDQFGRYWKQ 78

The following BLAST results are available for this feature:

BLAST of NO19G02590.3 vs.

BLAST of NO19G02590.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_071516804.1	3.100e-8	49.28	molecular chaperone DnaJ [Geitlerinema sp. PCC 922...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02590	NO19G02590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02590.3	NO19G02590.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02590.3.cds1	NO19G02590.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds2	NO19G02590.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds3	NO19G02590.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds4	NO19G02590.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds5	NO19G02590.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds6	NO19G02590.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds7	NO19G02590.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds8	NO19G02590.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds9	NO19G02590.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02590.3.cds10	NO19G02590.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:770486..774189+
coding sequence from alignment at chr19:770486..774189+

mRNA sequence

>NO19G02590.3 ID=NO19G02590.3|Name=NO19G02590.3|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
ATGTGGGGCTTGCTCTTTTTCTTTCTCAACCTTTTCAATGGTCATAGTCA
TACTTCCGGAACTCAAAATATGCGGCGTTGTCCTTCATCAGAAGGGACAA
CGACAAAGTCGGCAAGGGTCTACTGAAGATGCTCTTCGATGCAAATGCTT
GTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGAAAGTGGGCGATG
GGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATCGACCAACGTGCA
CAACCACACATACCACAGGTGAAGGCACAATTACACCGATGGCGGCTGAA
GAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGGGATGGAGGCGAG
CACTCTAAGGCGACGAAGACGATCACGCATAAGGAGACGAGGAGGGCTGA
AGTATTCCCTATCCATTCTTGGCATCCTGTTGCTCTCCCAAGCTTCCATC
AGCCATAGTGCCGCTCCTCCTCCTTCCTCCTCCTCACCCTCGATCCCTTC
CTCCTTCCCGTCCTCACCACGCGGCGGTAGCCTGACTTCACCAGTGACAG
CAGCAGCCCCTTCCTTGGACGACTACATCCGCTTTCCTCCCAAAGACCCT
TCCCTCTACCAAATCCTTGCTGTCTCACCCAATGTCACAATGCGTGAGAT
TTCCCAGGCCTACCGCCGAATCGCCCGCGTGTCGCACCCGGACAAGGACA
AGAGCAGAGAAGGCGAGTTCAAAGCCGCCACGGAGGCGTACAAGATCCTG
TCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGGCCGACTTTGGGA
TGAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCTCCTCCTCCTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGAGTGTCCTAACCC
GTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGCCGCCTGCCCACA
AACTGCCTCCTCTTACAGACCCACGCCTTGGAAAATTTCGACTACGAAGG
CCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCGCCTTGATGCCTACA
CGGCTGGCTACCCTCAAGATTTCGCCCGTCGGTGTTATGAGGAGGCGCGA
CAACTCCAAGCAGAGAGCCTTGGAAACGAGTTGCTACGCACCTTGGGCTA
TGTCTACGAGCGCTGCGGGCGACGTGCCCTGGAAAAACTGCGTGTTGCCT
CGTCCTTGTCCTCACCCTCCTCCTCGCCCGCCCTCCCTCCCTCCCTCTCT
CTCTTGTCCTCCTTGCCATTTGTTAGCAAGGGGAGGCAGTACACTCACCT
CTTAAGCAACTACCTTTCCACCGTCTCCTCCTCTGTCAATCTCCTCGGCC
TTTCTCTTCGGGTCCACGCTTCAGACGACGCCCAGATCTTTCCCTCCCTC
TTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATTGAAAAAACAGTCAC
GGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACAGGCATGGCATGGAA
GGAGGCAGGGACGGAAGAAGAGCGAGAAAAGGAGGGAGGGAGGAAGCAAA
ATGCTCGTTTTGTCAAGGTTGTCTATTGCCCATTTCCTCATTTATTCATC
TCCCTTTTCTCCTTCCCTTCCTCCCTCCCTGCCTATATCCCATCCTCATC
TCTAGACCCTCGCCACCTTGGACGCGCGCGCGCGAGGCCTCCTCGCTCTT
GGACAAGTCTTCTCCGCCGTGTCGCGCATGGAGAGAAGAGGAAAAGGAGT
TGGAGGAAGAAGGGAGACGACGGGGCAGAGAGGAGCAGACTTCCTTTCTC
CCTGCTCTACTCCTTACTTTTCGCAGTCGCCTTCATCGTCGTTGAGGGGG
GAAGCACCACTGAAAGGAGGAGAGTGGGATGGAGGAAAAGGGGGGCAAGG
GCCCTGCTAGTTTGATTATTATGGAGAGAAAAATAATGTGTATGTGTATA
TTTATAACTTTGAAATTGTGTTAAAGTTAGGGGAAACAAACACAGAGAAG
ATTAGAAAAGTAGATAAAGCGAATGAACAAAATCCACGCG

protein sequence of NO19G02590.3

>NO19G02590.3-protein ID=NO19G02590.3-protein|Name=NO19G02590.3|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MQMLVFYRQGVMQVLNESGRWGNDTKGETLPLYRPTCTTTHTTGEGTITP
MAAEECRDPIQRTNTRGMEASTLRRRRRSRIRRRGGLKYSLSILGILLLS
QASISHSAAPPPSSSSPSIPSSFPSSPRGGSLTSPVTAAAPSLDDYIRFP
PKDPSLYQILAVSPNVTMREISQAYRRIARVSHPDKDKSREGEFKAATEA
YKILSSPELRVRYHYYGRLWDENYPMDTSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSTTLLESVLTRHFGGRAFEPFIG
RLPTNCLLLQTHALENFDYEGRVIFLSHCLANRLDAYTAGYPQDFARRCY
EEARQLQAESLGNELLRTLGYVYERCGRRALEKLRVASSLSSPSSSPALP
PSLSLLSSLPFVSKGRQYTHLLSNYLSTVSSSVNLLGLSLRVHASDDAQI
FPSLFSTLWNLNKVEIEKTVTVVCKRVLRDPSQAWHGRRQGRKKSEKRRE
GGSKMLVLSRLSIAHFLIYSSPFSPSLPPSLPISHPHL*

mRNA from alignment at chr19:770486..774189+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02590.3 ID=NO19G02590.3|Name=NO19G02590.3|organism=Nannochloropsis oceanica|type=mRNA|length=3704bp|location=Sequence derived from alignment at chr19:770486..774189+ (Nannochloropsis oceanica)
ATGTGGGGCTTGCTCTTTTTCTTTCTCAACCTTTTCAATGGTCATAGTCA
TACTTCCGGAACTCAAAATATGCGGCGTTGTCCTTCATCAGAAGGGACAA
CGACAAAGTCGGCAAGGGTCTACTGAAGATGCTCTTCGATGCAAATGCTT
GTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGAAAGTGGGCGATG
GGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATCGACCAACGTGCA
CAACCACACATACCACAGGTGAAGGCACAATTACACCGATGGCGGCTGAA
GAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGGGATGGAGGCGAG
CACTCTAAGGCGACGAAGACGATCACGCATAAGGAGACGAGGAGGGTAAG
TTAAGAAAATGCAACCATTCACGCACACAAACACGTCTAACTGAATGTGC
CGTTGCACACTCGGACAGGCTGAAGTATTCCCTATCCATTCTTGGCATCC
TGTTGCTCTCCCAAGCTTCCATCAGCCATAGTGCCGCTCCTCCTCCTTCC
TCCTCCTCACCCTCGATCCCTTCCTCCTTCCCGTCCTCACCACGCGGCGG
TAGCCTGACTTCACCAGTGACAGCAGCAGCCCCTTCCTTGGACGACTACA
TCCGCGTAAGTCCATGCCCGCGCACATGCGCGATCTACTCTGATCTGCCC
TTCGTCTAAGCTCTAACGGCACCTCCTCCCTCCCCCCCTCGCTCCCTCCT
TCTTATTCAGTTTCCTCCCAAAGACCCTTCCCTCTACCAAATCCTTGCTG
TCTCACCCAATGTCACAATGCGTGAGATTTCCCAGGCCTACCGCCGAATC
GCCCGCGTGTCGCACCCGGACAAGGACAAGAGCAGAGAAGGCGAGGTACG
CCTTTTGTCCTCCCTCCCTCCTTCCCTCCCTCCCATCCTCCCTGTGAAGG
ATTCTTGTATCTGTTCAATTTATAGACGATTCTCCAATGCACATGCCTAC
CCTCTCTCTCCCGCTCGCTCCTTCTCTTGCCGATGGAGCACTCTTCTGGC
ACCTACATTCATTACCCCGCCTTCCCTCCCTCCCCTCCCTCCCTCCCTCT
CTCACCCCTCCCTCTTCAGTTCAAAGCCGCCACGGAGGCGTACAAGATCC
TGTCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGGCCGACTTTGG
GATGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GACGGCTGTCGGACCACGTCAACACGCTCTTTCTCCATGTTCACATATCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CACACACACACACACACACTCTCTCTCTCTCTCTCTCACTCTCTCTCTCA
CTCTCTCTCTCATTCTCTCCCTCTCTTCCGGGTATCCTCCTCTAAATATT
TCCTACAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGAGTGTCCTA
ACCCGTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGCCGCCTGCC
CACAAACTGCCTCCTCTTACAGGTACGCCTTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCTCTCATCTCCTTAATCATAGTCAGTCAAAATTTCGTCCT
ATCCACCATGCGCTCCACTCCAACCCTTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCTCTAGACCCACGCCTTGGAAAAT
TTCGACTACGAAGGCCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCG
CCTTGATGCCTACACGGCTGGTACGCCCTCCTCCCCCCCCTCCTTCCCTC
CCTTCTTCTCGCCCTCCCTCTTTCCTTCCCTCCTCCTGCCCTCCCTCTCT
CCCTCCCTCCCTCAGCTCATCACGCGTTGGTTCCAGTACTCCATCTCCGA
TTTTGAAGAGAGCCTCAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTCCCTTCCTCCCTCCCTCCTTCCCTTTCTCCCTCCCTAGGCTA
CCCTCAAGATTTCGCCCGTCGGTGTTATGAGGAGGCGCGACAACTCCAAG
CAGAGAGCCTTGGAAACGAGTTGCTACGCACCTTGGGTGCGTCCTCTCTC
TCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCCTACCTCT
ACATTGTATTGAATGGCCAGATGGCTTCCCTCTCTCTCTCCCTCCCTCCC
TTCCTCCCTCCTAACCTTCCTCTTCCCCTTCTCTCCCCCCTCTATCATCA
TTTTCTTCGTATTCCTCTCACCATCTTTGTGTCCCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCAGGCTATGTCTACGAGCGCTGCGGG
CGACGTGCCCTGGAAAAACTGCGTGTTGCCTCGTCCTTGTCCTCACCCTC
CTCCTCGCCCGCCCTCCCTCCCTCCCTCTCTCTCTTGTCCTCCTTGCCAT
TTGTTAGCAAGGGGAGGCAGTACACTCACCTCTTAAGGTGCGTGTATCAT
TGGAGAAGGAAGAGAGGGAGAGAGGGAATGAAGAATTAAAATGGATGAAT
TACAATATCATGATGTAGGCTCAGGGTCAAATCAGCGAGCAGATCGGCGC
GCTCTCTCACCCTCCTTGCCTCCCTCCCTCCCTCCGTCCGTTGCAGCAAC
TACCTTTCCACCGTCTCCTCCTCTGTCAATCTCCTCGGCCTTTCTCTTCG
GGTCCACGCTTCAGACGACGCCCAGGTGCCCTCCCTCCCTCCCTCCCTCC
CTCGGCCGTACCTTGCCTTGTCCCGCACCACAATCCTAACCAGCACCCTT
TTCTCTCCCTCCCTCCCTCCCTCCATTCCTCCCTCCCTCCCGTATTCAGA
TCTTTCCCTCCCTCTTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATT
GAAAAAACAGTCACGGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACA
GGCATGGCATGGAAGGAGGCAGGGACGGAAGAAGAGCGAGAAAAGGAGGG
AGGGAGGAAGCAAAATGCTCGTTTTGTCAAGGTTGTCTATTGCCCATTTC
CTCATTTATTCATCTCCCTTTTCTCCTTCCCTTCCTCCCTCCCTGCCTAT
ATCCCATCCTCATCTCTAGACCCTCGCCACCTTGGACGCGCGCGCGCGAG
GCCTCCTCGCTCTTGGACAAGTCTTCTCCGCCGTGTCGCGCATGGAGAGA
AGAGGAAAAGGAGTTGGAGGAAGAAGGGAGACGACGGGGCAGAGAGGAGC
AGACTTCCTTTCTCCCTGCTCTACTCCTTACTTTTCGCAGTCGCCTTCAT
CGTCGTTGAGGGGGGAAGCACCACTGAAAGGAGGAGAGTGGGATGGAGGA
AAAGGGGGGCAAGGGCCCTGCTAGTTTGATTATTATGGAGAGAAAAATAA
TGTGTATGTGTATATTTATAACTTTGAAATTGTGTTAAAGTTAGGGGAAA
CAAACACAGAGAAGATTAGAAAAGTAGATAAAGCGAATGAACAAAATCCA
CGCG

Coding sequence (CDS) from alignment at chr19:770486..774189+

>NO19G02590.3 ID=NO19G02590.3|Name=NO19G02590.3|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr19:770486..774189+ (Nannochloropsis oceanica)
ATGCAAATGCTTGTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGA
AAGTGGGCGATGGGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATC
GACCAACGTGCACAACCACACATACCACAGGTGAAGGCACAATTACACCG
ATGGCGGCTGAAGAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGG
GATGGAGGCGAGCACTCTAAGGCGACGAAGACGATCACGCATAAGGAGAC
GAGGAGGGCTGAAGTATTCCCTATCCATTCTTGGCATCCTGTTGCTCTCC
CAAGCTTCCATCAGCCATAGTGCCGCTCCTCCTCCTTCCTCCTCCTCACC
CTCGATCCCTTCCTCCTTCCCGTCCTCACCACGCGGCGGTAGCCTGACTT
CACCAGTGACAGCAGCAGCCCCTTCCTTGGACGACTACATCCGCTTTCCT
CCCAAAGACCCTTCCCTCTACCAAATCCTTGCTGTCTCACCCAATGTCAC
AATGCGTGAGATTTCCCAGGCCTACCGCCGAATCGCCCGCGTGTCGCACC
CGGACAAGGACAAGAGCAGAGAAGGCGAGTTCAAAGCCGCCACGGAGGCG
TACAAGATCCTGTCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGG
CCGACTTTGGGATGAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCT
CCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGA
GTGTCCTAACCCGTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGC
CGCCTGCCCACAAACTGCCTCCTCTTACAGACCCACGCCTTGGAAAATTT
CGACTACGAAGGCCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCGCC
TTGATGCCTACACGGCTGGCTACCCTCAAGATTTCGCCCGTCGGTGTTAT
GAGGAGGCGCGACAACTCCAAGCAGAGAGCCTTGGAAACGAGTTGCTACG
CACCTTGGGCTATGTCTACGAGCGCTGCGGGCGACGTGCCCTGGAAAAAC
TGCGTGTTGCCTCGTCCTTGTCCTCACCCTCCTCCTCGCCCGCCCTCCCT
CCCTCCCTCTCTCTCTTGTCCTCCTTGCCATTTGTTAGCAAGGGGAGGCA
GTACACTCACCTCTTAAGCAACTACCTTTCCACCGTCTCCTCCTCTGTCA
ATCTCCTCGGCCTTTCTCTTCGGGTCCACGCTTCAGACGACGCCCAGATC
TTTCCCTCCCTCTTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATTGA
AAAAACAGTCACGGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACAGG
CATGGCATGGAAGGAGGCAGGGACGGAAGAAGAGCGAGAAAAGGAGGGAG
GGAGGAAGCAAAATGCTCGTTTTGTCAAGGTTGTCTATTGCCCATTTCCT
CATTTATTCATCTCCCTTTTCTCCTTCCCTTCCTCCCTCCCTGCCTATAT
CCCATCCTCATCTCTAG

Synonyms

Publications