NO19G02590.2, NO19G02590.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02590.2
Unique NameNO19G02590.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1972
Alignment locationchr19:770486..774189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:770486..774189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02590.2 vs.
Match: XP_024014328.1 (chaperone protein dnaJ 10 isoform X1 [Eutrema salsugineum])

HSP 1 Score: 79.0 bits (193), Expect = 5.400e-11
Identity = 66/254 (25.98%), Postives = 111/254 (43.70%), Query Frame = 0 
Query:  290 FGGRAFEPFIGRLPTNCLLLQTHALENFDYEGRVIFLSH---------------CLANRLDAYTAGYPQDFARRCYEEARQLQAESLGNELLRTLGYVYERCGRRALEKLRVASSLSSPSSSPALPPSLSLLSSLPFVSKG-RQYTHLLSNYLSTVSSSVNLLGLSLRVHASDDAQ--------------IFPSLFSTLWNLNKVEIEKTVTVVCKRVLRDPSQTLATLDARARGLLALGQVFSAVSRMERRGK 514
            FG   FE ++G+L    L      LE+++ E R   L                  L N+L+ +  G   +F     EEA++L +   G  ++ T+GY+Y R   + + K +                       +PF+++  R   H + + +   S +V+LL L   V+  ++ Q                 +L  +LW +N ++IE T++ VC+ VL+DPS +   L ARA GL  LG +F  VS+ +R  K
Sbjct:   91 FGSEVFEEYVGQLALAYLASIEADLESYEPEIRKQMLQDKIKALQKEREDKLAATLKNKLEPFVEGRSDEFIEWANEEAKRLSSAGFGEAMMHTIGYIYTRKAAKEIGKDK-------------------RFMKVPFLAEWVRDKGHHMKSQVMAASGAVSLLQLQDEVNKLNEHQGEHKEEHIQKAIEAKMDALLQSLWQINVLDIESTLSHVCQSVLKDPSVSKDVLRARATGLRKLGTIFQ-VSKNKRGAK 324
The following BLAST results are available for this feature:
BLAST of NO19G02590.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024014328.15.400e-1125.98chaperone protein dnaJ 10 isoform X1 [Eutrema sals... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02590NO19G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02590.2NO19G02590.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02590.2.cds1NO19G02590.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds2NO19G02590.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds3NO19G02590.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds4NO19G02590.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds5NO19G02590.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds6NO19G02590.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds7NO19G02590.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds8NO19G02590.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds9NO19G02590.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds10NO19G02590.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02590.2.cds11NO19G02590.2.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02590.2 ID=NO19G02590.2|Name=NO19G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp
ATGTGGGGCTTGCTCTTTTTCTTTCTCAACCTTTTCAATGGTCATAGTCA
TACTTCCGGAACTCAAAATATGCGGCGTTGTCCTTCATCAGAAGGGACAA
CGACAAAGTCGGCAAGGGTCTACTGAAGATGCTCTTCGATGCAAATGCTT
GTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGAAAGTGGGCGATG
GGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATCGACCAACGTGCA
CAACCACACATACCACAGGTGAAGGCACAATTACACCGATGGCGGCTGAA
GAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGGGATGGAGGCGAG
CACTCTAAGGCGACGAAGACGATCACGCATAAGGAGACGAGGAGGGCTGA
AGTATTCCCTATCCATTCTTGGCATCCTGTTGCTCTCCCAAGCTTCCATC
AGCCATAGTGCCGCTCCTCCTCCTTCCTCCTCCTCACCCTCGATCCCTTC
CTCCTTCCCGTCCTCACCACGCGGCGGTAGCCTGACTTCACCAGTGACAG
CAGCAGCCCCTTCCTTGGACGACTACATCCGCTTTCCTCCCAAAGACCCT
TCCCTCTACCAAATCCTTGCTGTCTCACCCAATGTCACAATGCGTGAGAT
TTCCCAGGCCTACCGCCGAATCGCCCGCGTGTCGCACCCGGACAAGGACA
AGAGCAGAGAAGGCGAGTTCAAAGCCGCCACGGAGGCGTACAAGATCCTG
TCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGGCCGACTTTGGGA
TGAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCTCCTCCTCCTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGAGTGTCCTAACCC
GTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGCCGCCTGCCCACA
AACTGCCTCCTCTTACAGACCCACGCCTTGGAAAATTTCGACTACGAAGG
CCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCGCCTTGATGCCTACA
CGGCTGGCTACCCTCAAGATTTCGCCCGTCGGTGTTATGAGGAGGCGCGA
CAACTCCAAGCAGAGAGCCTTGGAAACGAGTTGCTACGCACCTTGGGCTA
TGTCTACGAGCGCTGCGGGCGACGTGCCCTGGAAAAACTGCGTGTTGCCT
CGTCCTTGTCCTCACCCTCCTCCTCGCCCGCCCTCCCTCCCTCCCTCTCT
CTCTTGTCCTCCTTGCCATTTGTTAGCAAGGGGAGGCAGTACACTCACCT
CTTAAGCAACTACCTTTCCACCGTCTCCTCCTCTGTCAATCTCCTCGGCC
TTTCTCTTCGGGTCCACGCTTCAGACGACGCCCAGATCTTTCCCTCCCTC
TTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATTGAAAAAACAGTCAC
GGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACAGACCCTCGCCACCT
TGGACGCGCGCGCGCGAGGCCTCCTCGCTCTTGGACAAGTCTTCTCCGCC
GTGTCGCGCATGGAGAGAAGAGGAAAAGGAGTTGGAGGAAGAAGGGAGAC
GACGGGGCAGAGAGGAGCAGACTTCCTTTCTCCCTGCTCTACTCCTTACT
TTTCGCAGTCGCCTTCATCGTCGTTGAGGGGGGAAGCACCACTGAAAGGA
GGAGAGTGGGATGGAGGAAAAGGGGGGCAAGGGCCCTGCTAGTTTGATTA
TTATGGAGAGAAAAATAATGTGTATGTGTATATTTATAACTTTGAAATTG
TGTTAAAGTTAGGGGAAACAAACACAGAGAAGATTAGAAAAGTAGATAAA
GCGAATGAACAAAATCCACGCG
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protein sequence of NO19G02590.2

>NO19G02590.2-protein ID=NO19G02590.2-protein|Name=NO19G02590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MQMLVFYRQGVMQVLNESGRWGNDTKGETLPLYRPTCTTTHTTGEGTITP
MAAEECRDPIQRTNTRGMEASTLRRRRRSRIRRRGGLKYSLSILGILLLS
QASISHSAAPPPSSSSPSIPSSFPSSPRGGSLTSPVTAAAPSLDDYIRFP
PKDPSLYQILAVSPNVTMREISQAYRRIARVSHPDKDKSREGEFKAATEA
YKILSSPELRVRYHYYGRLWDENYPMDTSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSTTLLESVLTRHFGGRAFEPFIG
RLPTNCLLLQTHALENFDYEGRVIFLSHCLANRLDAYTAGYPQDFARRCY
EEARQLQAESLGNELLRTLGYVYERCGRRALEKLRVASSLSSPSSSPALP
PSLSLLSSLPFVSKGRQYTHLLSNYLSTVSSSVNLLGLSLRVHASDDAQI
FPSLFSTLWNLNKVEIEKTVTVVCKRVLRDPSQTLATLDARARGLLALGQ
VFSAVSRMERRGKGVGGRRETTGQRGADFLSPCSTPYFSQSPSSSLRGEA
PLKGGEWDGGKGGQGPC*
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mRNA from alignment at chr19:770486..774189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02590.2 ID=NO19G02590.2|Name=NO19G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=3704bp|location=Sequence derived from alignment at chr19:770486..774189+ (Nannochloropsis oceanica)
ATGTGGGGCTTGCTCTTTTTCTTTCTCAACCTTTTCAATGGTCATAGTCA
TACTTCCGGAACTCAAAATATGCGGCGTTGTCCTTCATCAGAAGGGACAA
CGACAAAGTCGGCAAGGGTCTACTGAAGATGCTCTTCGATGCAAATGCTT
GTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGAAAGTGGGCGATG
GGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATCGACCAACGTGCA
CAACCACACATACCACAGGTGAAGGCACAATTACACCGATGGCGGCTGAA
GAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGGGATGGAGGCGAG
CACTCTAAGGCGACGAAGACGATCACGCATAAGGAGACGAGGAGGGTAAG
TTAAGAAAATGCAACCATTCACGCACACAAACACGTCTAACTGAATGTGC
CGTTGCACACTCGGACAGGCTGAAGTATTCCCTATCCATTCTTGGCATCC
TGTTGCTCTCCCAAGCTTCCATCAGCCATAGTGCCGCTCCTCCTCCTTCC
TCCTCCTCACCCTCGATCCCTTCCTCCTTCCCGTCCTCACCACGCGGCGG
TAGCCTGACTTCACCAGTGACAGCAGCAGCCCCTTCCTTGGACGACTACA
TCCGCGTAAGTCCATGCCCGCGCACATGCGCGATCTACTCTGATCTGCCC
TTCGTCTAAGCTCTAACGGCACCTCCTCCCTCCCCCCCTCGCTCCCTCCT
TCTTATTCAGTTTCCTCCCAAAGACCCTTCCCTCTACCAAATCCTTGCTG
TCTCACCCAATGTCACAATGCGTGAGATTTCCCAGGCCTACCGCCGAATC
GCCCGCGTGTCGCACCCGGACAAGGACAAGAGCAGAGAAGGCGAGGTACG
CCTTTTGTCCTCCCTCCCTCCTTCCCTCCCTCCCATCCTCCCTGTGAAGG
ATTCTTGTATCTGTTCAATTTATAGACGATTCTCCAATGCACATGCCTAC
CCTCTCTCTCCCGCTCGCTCCTTCTCTTGCCGATGGAGCACTCTTCTGGC
ACCTACATTCATTACCCCGCCTTCCCTCCCTCCCCTCCCTCCCTCCCTCT
CTCACCCCTCCCTCTTCAGTTCAAAGCCGCCACGGAGGCGTACAAGATCC
TGTCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGGCCGACTTTGG
GATGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GACGGCTGTCGGACCACGTCAACACGCTCTTTCTCCATGTTCACATATCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CACACACACACACACACACTCTCTCTCTCTCTCTCTCACTCTCTCTCTCA
CTCTCTCTCTCATTCTCTCCCTCTCTTCCGGGTATCCTCCTCTAAATATT
TCCTACAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGAGTGTCCTA
ACCCGTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGCCGCCTGCC
CACAAACTGCCTCCTCTTACAGGTACGCCTTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCTCTCATCTCCTTAATCATAGTCAGTCAAAATTTCGTCCT
ATCCACCATGCGCTCCACTCCAACCCTTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCTCTAGACCCACGCCTTGGAAAAT
TTCGACTACGAAGGCCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCG
CCTTGATGCCTACACGGCTGGTACGCCCTCCTCCCCCCCCTCCTTCCCTC
CCTTCTTCTCGCCCTCCCTCTTTCCTTCCCTCCTCCTGCCCTCCCTCTCT
CCCTCCCTCCCTCAGCTCATCACGCGTTGGTTCCAGTACTCCATCTCCGA
TTTTGAAGAGAGCCTCAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTCCCTTCCTCCCTCCCTCCTTCCCTTTCTCCCTCCCTAGGCTA
CCCTCAAGATTTCGCCCGTCGGTGTTATGAGGAGGCGCGACAACTCCAAG
CAGAGAGCCTTGGAAACGAGTTGCTACGCACCTTGGGTGCGTCCTCTCTC
TCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCCTACCTCT
ACATTGTATTGAATGGCCAGATGGCTTCCCTCTCTCTCTCCCTCCCTCCC
TTCCTCCCTCCTAACCTTCCTCTTCCCCTTCTCTCCCCCCTCTATCATCA
TTTTCTTCGTATTCCTCTCACCATCTTTGTGTCCCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCAGGCTATGTCTACGAGCGCTGCGGG
CGACGTGCCCTGGAAAAACTGCGTGTTGCCTCGTCCTTGTCCTCACCCTC
CTCCTCGCCCGCCCTCCCTCCCTCCCTCTCTCTCTTGTCCTCCTTGCCAT
TTGTTAGCAAGGGGAGGCAGTACACTCACCTCTTAAGGTGCGTGTATCAT
TGGAGAAGGAAGAGAGGGAGAGAGGGAATGAAGAATTAAAATGGATGAAT
TACAATATCATGATGTAGGCTCAGGGTCAAATCAGCGAGCAGATCGGCGC
GCTCTCTCACCCTCCTTGCCTCCCTCCCTCCCTCCGTCCGTTGCAGCAAC
TACCTTTCCACCGTCTCCTCCTCTGTCAATCTCCTCGGCCTTTCTCTTCG
GGTCCACGCTTCAGACGACGCCCAGGTGCCCTCCCTCCCTCCCTCCCTCC
CTCGGCCGTACCTTGCCTTGTCCCGCACCACAATCCTAACCAGCACCCTT
TTCTCTCCCTCCCTCCCTCCCTCCATTCCTCCCTCCCTCCCGTATTCAGA
TCTTTCCCTCCCTCTTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATT
GAAAAAACAGTCACGGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACA
GGCATGGCATGGAAGGAGGCAGGGACGGAAGAAGAGCGAGAAAAGGAGGG
AGGGAGGAAGCAAAATGCTCGTTTTGTCAAGGTTGTCTATTGCCCATTTC
CTCATTTATTCATCTCCCTTTTCTCCTTCCCTTCCTCCCTCCCTGCCTAT
ATCCCATCCTCATCTCTAGACCCTCGCCACCTTGGACGCGCGCGCGCGAG
GCCTCCTCGCTCTTGGACAAGTCTTCTCCGCCGTGTCGCGCATGGAGAGA
AGAGGAAAAGGAGTTGGAGGAAGAAGGGAGACGACGGGGCAGAGAGGAGC
AGACTTCCTTTCTCCCTGCTCTACTCCTTACTTTTCGCAGTCGCCTTCAT
CGTCGTTGAGGGGGGAAGCACCACTGAAAGGAGGAGAGTGGGATGGAGGA
AAAGGGGGGCAAGGGCCCTGCTAGTTTGATTATTATGGAGAGAAAAATAA
TGTGTATGTGTATATTTATAACTTTGAAATTGTGTTAAAGTTAGGGGAAA
CAAACACAGAGAAGATTAGAAAAGTAGATAAAGCGAATGAACAAAATCCA
CGCG
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Coding sequence (CDS) from alignment at chr19:770486..774189+

>NO19G02590.2 ID=NO19G02590.2|Name=NO19G02590.2|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr19:770486..774189+ (Nannochloropsis oceanica)
ATGCAAATGCTTGTGTTTTACCGCCAGGGTGTGATGCAGGTGTTGAACGA
AAGTGGGCGATGGGGCAACGATACGAAAGGGGAAACGCTCCCTTTGTATC
GACCAACGTGCACAACCACACATACCACAGGTGAAGGCACAATTACACCG
ATGGCGGCTGAAGAGTGTAGGGATCCAATCCAGCGCACAAATACACGAGG
GATGGAGGCGAGCACTCTAAGGCGACGAAGACGATCACGCATAAGGAGAC
GAGGAGGGCTGAAGTATTCCCTATCCATTCTTGGCATCCTGTTGCTCTCC
CAAGCTTCCATCAGCCATAGTGCCGCTCCTCCTCCTTCCTCCTCCTCACC
CTCGATCCCTTCCTCCTTCCCGTCCTCACCACGCGGCGGTAGCCTGACTT
CACCAGTGACAGCAGCAGCCCCTTCCTTGGACGACTACATCCGCTTTCCT
CCCAAAGACCCTTCCCTCTACCAAATCCTTGCTGTCTCACCCAATGTCAC
AATGCGTGAGATTTCCCAGGCCTACCGCCGAATCGCCCGCGTGTCGCACC
CGGACAAGGACAAGAGCAGAGAAGGCGAGTTCAAAGCCGCCACGGAGGCG
TACAAGATCCTGTCTTCGCCCGAGCTGCGAGTCCGGTATCATTATTATGG
CCGACTTTGGGATGAGAACTATCCAATGGACACTTCCTCCTCCTCCTCCT
CCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTTGCTGGAGA
GTGTCCTAACCCGTCATTTCGGGGGACGAGCCTTCGAGCCTTTCATCGGC
CGCCTGCCCACAAACTGCCTCCTCTTACAGACCCACGCCTTGGAAAATTT
CGACTACGAAGGCCGCGTCATTTTCCTCTCCCATTGCCTCGCCAACCGCC
TTGATGCCTACACGGCTGGCTACCCTCAAGATTTCGCCCGTCGGTGTTAT
GAGGAGGCGCGACAACTCCAAGCAGAGAGCCTTGGAAACGAGTTGCTACG
CACCTTGGGCTATGTCTACGAGCGCTGCGGGCGACGTGCCCTGGAAAAAC
TGCGTGTTGCCTCGTCCTTGTCCTCACCCTCCTCCTCGCCCGCCCTCCCT
CCCTCCCTCTCTCTCTTGTCCTCCTTGCCATTTGTTAGCAAGGGGAGGCA
GTACACTCACCTCTTAAGCAACTACCTTTCCACCGTCTCCTCCTCTGTCA
ATCTCCTCGGCCTTTCTCTTCGGGTCCACGCTTCAGACGACGCCCAGATC
TTTCCCTCCCTCTTCTCCACCCTCTGGAACCTCAACAAAGTCGAGATTGA
AAAAACAGTCACGGTCGTTTGCAAGCGTGTCTTGCGAGACCCCTCACAGA
CCCTCGCCACCTTGGACGCGCGCGCGCGAGGCCTCCTCGCTCTTGGACAA
GTCTTCTCCGCCGTGTCGCGCATGGAGAGAAGAGGAAAAGGAGTTGGAGG
AAGAAGGGAGACGACGGGGCAGAGAGGAGCAGACTTCCTTTCTCCCTGCT
CTACTCCTTACTTTTCGCAGTCGCCTTCATCGTCGTTGAGGGGGGAAGCA
CCACTGAAAGGAGGAGAGTGGGATGGAGGAAAAGGGGGGCAAGGGCCCTG
CTAG
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Synonyms
Publications