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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr19 | genome | chr19:739810..743604 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G02520.2 vs.
Match: CBJ26302.1 (Heat shock protein 40 like protein [Ectocarpus siliculosus]) HSP 1 Score: 327.8 bits (839), Expect = 5.400e-86 Identity = 206/444 (46.40%), Postives = 279/444 (62.84%), Query Frame = 0
Query: 24 ARQQQGQEAQKKEETQEEDGEEEQYRVMAEGYKDEGNAAFKEGRYKEAIALYTQGLDIDPDNHVLYSNRSAAYLKEQE-RGKALKDAEKLMEIKPDWPKSYSRKGAAQHALTRYALAIETYQEGIALFPTDKALVDGLKAAEEAYNIDKQARFEQAKRERETAEHRKKKEAEAKAAAENKEKEAEEPPPT------------DDLASFFSLVGATGTDPKQTISGANVQRDVKKALKEDYAKADLGTSESQIARLLQPNYSWKNLNPYSVLSLGIDATEDDIKLRYRKLSTLVHPDKCLEIEEARDAFEEVKKAYNQLMDEERRAWCIATIQQTQKRTIKDRKHKLSKGMTL----QELGSEQAAIQKAIMMEFAEVEMRKKNAEKHAQAFKQYEQQMEDEERLKQQREMEFDATWTAEDRREGRVGNWRDFQKGPGAKRAKVQ 451
A ++ GQ+AQ EEE +++ AE +K+EGN AFK G++KEAI YT+ +DIDPDN V +SNRSAAYLK + + KALKDAE+ ME+ P+W KS+SR GAAQHAL R+ A++T++ G+A+ P + L L AA+EA D++ R+ QA ER+ E R KK+ KA A+ + EA E D L+SFFS + ++++ V+R L + Y D+GT + Q+ RLLQ NY WKNLN + L LG DAT +DIK RYRKLSTLVHPDK L++ +ARDAFEEVKKAY L+DE+RR ATI R K+R+ K+ KG+ L +ELGSE+A +KA M EFA +E+R++ EKH QA K+ E E+ E+ ++ +E + W +RRE RVG WRDFQK G + KVQ
Sbjct: 7 AEEKHGQDAQ----------EEEDWKIQAEAFKNEGNEAFKTGKWKEAIEGYTRAIDIDPDNKVYFSNRSAAYLKLGDAKSKALKDAERCMELAPEWSKSFSRLGAAQHALGRFDGAVQTFKAGLAIDPNNAGLESSLAAAKEAQETDRRERWRQAAIERDIEEERLKKKDALKAKAKAEAAEAAEAKAAAAVEAGEGTASGDPLSSFFSEIQGE----QKSVPAKKVER----VLHDKYTNQDMGTPKEQMDRLLQHNYKWKNLNAFETLQLGQDATVEDIKQRYRKLSTLVHPDKRLDMPQARDAFEEVKKAYQLLLDEDRRITMAATIDAVCTRVSKERQKKIDKGVALADLTKELGSEEAHKKKACMKEFATIELRRREIEKHRQAQKKREHSQEEAEKDAIRKNVEGEKAWAETERREKRVGGWRDFQK--GGNKPKVQ 430
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G02520.2 ID=NO19G02520.2|Name=NO19G02520.2|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp
AAATCAAACAGGTGGATCGAGGCAGGCAGCATCAGGAAGCAATGAGCGAC
AGTGAGGCGGCCGCCGGCGGCATGGACCAACCCTTTCCTCCGGAACTCAA
AGGGGAGGAGGCCAGGCAGCAGCAAGGACAGGAGGCACAGAAAAAGGAGG
AGACACAGGAGGAGGATGGAGAAGAAGAGCAGTACCGTGTGATGGCAGAG
GGGTACAAGGACGAAGGGAATGCGGCCTTCAAGGAGGGGAGGTATAAAGA
AGCCATCGCCCTCTACACGCAGGGTCTGGATATTGACCCCGACAACCACG
TGCTGTATAGCAACCGAAGCGCGGCGTATTTGAAGGAGCAGGAGCGGGGA
AAGGCTTTGAAGGACGCGGAGAAGCTGATGGAGATAAAGCCTGACTGGCC
CAAGAGTTATTCCCGAAAAGGAGCCGCCCAACATGCCCTCACGCGCTATG
CACTCGCCATCGAGACGTACCAGGAAGGCATCGCTTTATTCCCTACCGAT
AAAGCGCTCGTGGACGGGCTCAAGGCCGCAGAGGAGGCCTACAACATCGA
CAAACAAGCCCGCTTCGAGCAAGCAAAGAGGGAACGAGAAACAGCAGAGC
ATCGAAAAAAGAAAGAAGCCGAAGCCAAGGCAGCCGCAGAGAATAAGGAG
AAGGAAGCGGAGGAGCCACCCCCTACAGATGACCTCGCTTCCTTCTTCTC
CCTGGTAGGGGCCACAGGAACAGATCCTAAACAGACCATATCCGGCGCTA
ACGTCCAACGAGACGTTAAAAAAGCGTTGAAGGAGGACTACGCCAAGGCC
GATCTCGGCACGTCCGAATCTCAAATAGCTCGTCTTCTTCAACCAAATTA
TTCATGGAAGAACCTCAATCCTTACTCTGTCCTCTCCCTCGGGATCGATG
CCACGGAGGATGACATTAAGCTTCGCTATCGCAAGCTTTCTACGCTCGTT
CACCCTGATAAATGCCTGGAGATAGAAGAAGCGCGTGACGCCTTCGAAGA
GGTGAAAAAGGCTTACAACCAGCTCATGGACGAGGAGCGACGGGCCTGGT
GTATTGCCACCATCCAACAAACACAAAAACGCACAATTAAAGACAGGAAG
CACAAGCTCTCGAAAGGCATGACTCTTCAAGAGCTCGGATCGGAACAAGC
CGCGATCCAAAAAGCCATCATGATGGAGTTCGCAGAGGTGGAAATGAGAA
AGAAGAACGCGGAGAAGCATGCCCAAGCCTTCAAGCAATACGAGCAGCAA
ATGGAGGACGAGGAAAGGTTGAAGCAACAAAGGGAGATGGAGTTTGACGC
CACGTGGACCGCCGAAGACAGGCGGGAGGGAAGGGTGGGCAACTGGCGAG
ATTTTCAAAAAGGACCCGGCGCGAAACGGGCCAAGGTCCAGGTATGTGTG
ATGACATGAATACCCTCCCTTCCCTCTCTCCATCCCTCCCTCTTTGCCTC
CCTCCTTCCCTCCTGCGTTCCTCCCTCCCTCTCTTTTCCTCCCTCCCTCC
CTCCCTTCCTTCCTCCCTCTCTTCCCTCCTGTGTTTACTGACGGTTTCAT
TTTCCCCTTGCTCTTCTCACACACCCCACACTCTGCCTCCCTTCCTATTC
CTCGCACGTTCATGCACTCCCCAGTCGTGGACGGTGGAGGAAAATGCGAA
AAACAAACCCAAGTTCGGGCAATCGAGCAAGGATGAATGGAAGAAAAATT
GGAAGTAGAGAGAGAATAGGGACGAAGATGGAGGTGGATCAAAGAGAGAA
TCGTACGGAAGAAGGGAAGGAGGGAATGGAGAAGAAATGAAGAAAAAGGA
TGGAGGAGGTATAGTAATAGAAGGAGGAGGAGCTACGGGAGGGAGGGAGG
ACTTTAAGACGAGGGGGACATGTGCATAAGGGAATAAAGGCAGGATAAGC
GCAAAAGAATCGGAGATGGAAAGACTACCACCATCACCATCACCATCAGA
ATCTTTTTATACAATTATATACTCGACATA back to topprotein sequence of NO19G02520.2 >NO19G02520.2-protein ID=NO19G02520.2-protein|Name=NO19G02520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MSDSEAAAGGMDQPFPPELKGEEARQQQGQEAQKKEETQEEDGEEEQYRV
MAEGYKDEGNAAFKEGRYKEAIALYTQGLDIDPDNHVLYSNRSAAYLKEQ
ERGKALKDAEKLMEIKPDWPKSYSRKGAAQHALTRYALAIETYQEGIALF
PTDKALVDGLKAAEEAYNIDKQARFEQAKRERETAEHRKKKEAEAKAAAE
NKEKEAEEPPPTDDLASFFSLVGATGTDPKQTISGANVQRDVKKALKEDY
AKADLGTSESQIARLLQPNYSWKNLNPYSVLSLGIDATEDDIKLRYRKLS
TLVHPDKCLEIEEARDAFEEVKKAYNQLMDEERRAWCIATIQQTQKRTIK
DRKHKLSKGMTLQELGSEQAAIQKAIMMEFAEVEMRKKNAEKHAQAFKQY
EQQMEDEERLKQQREMEFDATWTAEDRREGRVGNWRDFQKGPGAKRAKVQ
VCVMT* back to topmRNA from alignment at chr19:739810..743604+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G02520.2 ID=NO19G02520.2|Name=NO19G02520.2|organism=Nannochloropsis oceanica|type=mRNA|length=3795bp|location=Sequence derived from alignment at chr19:739810..743604+ (Nannochloropsis oceanica)
AAATCAAACAGGTGGATCGAGGCAGGCAGCATCAGGAAGCAATGAGCGAC
AGTGAGGCGGCCGCCGGCGGCATGGACCAACCCTTTCCTCCGGAACTCAA
AGGGGAGGAGGCCAGGCAGCAGCAAGGACAGGAGGCACAGAAAAAGGAGG
AGACACAGGAGGAGGATGGAGAAGAAGAGCAGTACCGTGTGATGGCAGAG
GGGTACAAGGACGAAGGGAATGCGGCCTTCAAGGAGGGGAGGTAAGTCTG
GGTTTGGAGGTCACCCCCACCCTCTCTCCCTCCTCCTTAATCCCCAATCT
AATCCATGCACGTCATCACCATCGTCTTGTCTCAACAAGGGTGAGTGAAT
CTCGAGCTTACTCCTCACCTTTCGCCGTCTCCCTCCCTCCCTCTCCCTCT
TTGCCTAGGTATAAAGAAGCCATCGCCCTCTACACGCAGGGTCTGGATAT
TGACCCCGACAACCACGTGCTGTATAGCAACCGAAGCGCGGCGTATTTGA
AGGAGCAGGAGCGGGGAAAGGTATGTACATATATATACATATTTGGTTTG
GCCGTGTGAACGCATGTGTGCGTGAGAGCTCATGTCTAACAATACCTACC
GCCTGGTGGCATCAGGCTTCGAGGACATTCACCCCTCATTCCCTCCCCCC
TTCCCTCTCTCCTTCCCTCAGGCTTTGAAGGACGCGGAGAAGCTGATGGA
GATAAAGCCTGACTGGCCCAAGAGTTATTCCCGAAAAGGAGCCGCCCAAC
ATGCCCTCACGCGCTATGCAGTACGTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCAGGTTCCCTCTCGGCCACTTTCCTCCCTCCTTCCCTCCCTCTTTC
CCTCCCTCTTTCCCTCCCTCCTTCCTTTCCTCCCTCCAGCTCGCCATCGA
GACGTACCAGGAAGGCATCGCTTTATTCCCTACCGATAAAGCGCTCGTGG
ACGGGCTCAAGGCCGCAGAGGAGGTATGTGCCTTCCCTCCTTCCCTCCCT
TCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTTCTTCCTTTCTTTCTTT
CTTCCCCTTCATCCATGTATCCTTACATTCATTCTTTCTTCCCTCGGCCT
CTTCTCGTCTTTCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTACC
AGGCCTACAACATCGACAAACAAGCCCGCTTCGAGCAAGCAAAGAGGGAA
CGAGAAACAGCAGAGCATCGAAAAAAGAAAGAAGCCGAAGCCAAGGCAGC
CGCAGAGAATAAGGAGAAGGAAGCGGAGGAGGTGAGAGGCGGGAGGTTGG
CCTCCCCTCCCTCCCTCCTTTCCTCCCTCCCTCTCTCCCTCCCTAAACCA
CTGCGTGTGATCAGCAGCAGTGTGCAGCAGCAGCAGCAGCCCCTTCGCCC
TCCCTCCTCCCCTCCCTTACTCCCATTCACCCGTCATCCACACTCCCTCC
CTGCCACCCTCCCTCCCTCAGCCACCCCCTACAGATGACCTCGCTTCCTT
CTTCTCCCTGGTAGGGGCCACAGGAACAGATCCTAAACAGACCATATCCG
GCGCTAACGTCCAACGAGACGTTAAAAAAGCGTTGAAGGAGGACTACGCC
AAGGCCGATCTCGGTGAGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGAAGGGAGGGAGGGTGGATGAAGGTGGAATAATCGACGAGAGGAAGA
AGCTGAAGGGAAGCCACGACCCGAATGCCGAGCTTCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCTAGGCACGTCCGAATCTCAAATAGCTCGTCTTCTT
CAACCAAATTATTCATGGAAGAACCTCAATCCTTACTCTGTCCTCTCCCT
CGGGATCGGTACGTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCAA
CATTTCCTTCTGCCTTCCCTAATTTGCTTTCTCTCTCTCAGTGCAAGCCA
TCGAAGACAACATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCAGACGCCACGAAAGATGATATGCTTCG
CTATCACAAGCTTTCTGCCCACTCGCCCTCCCTCCCTCCCTCCCTCCTTC
CTTCCCTCCCTCTCTCCCCCTTAGATGCCACGGAGGATGACATTAAGCTT
CGCTATCGCAAGCTTTCTACGCTCGTTCACCCTGATAAATGCCTGGAGAT
AGAAGAAGCGCGTGACGCCTTCGAAGAGGTACGTCCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCCCTTTCTCCCTCCCGCCTTCGGACCAACCGACTCTC
CTTCCCTCCCTCCCCTCCCCCTCAGGTGAAAAAGGCTTACAACCAGCTCA
TGGACGAGGAGCGACGGGCCTGGTGTATTGCCACCATCCAACAAACACAA
AAACGCACAATTAAAGACAGGAAGCACAAGCTCTCGAAAGGTACGTCCCG
TCTTCCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCGACT
CCCTCTCTCCCTCCCTCCGACTCCTTCCCTTCCAGGCATGACTCTTCAAG
AGCTCGGATCGGAACAAGCCGCGATCCAAAAAGCCATCATGATGGAGTTC
GCAGAGGTGGAAATGAGAAAGAAGAACGCGGAGAAGCATGCCCAAGCCTT
CAAGTAAAGAGCGTTTCCTCCCTCCCTCCCTTCCACGCTTCTTCCCTCCC
TCCCTCTCCCTCTAGCCCTGCCTTTATTAATGCCTCCCTGCGTTGGCTTT
TCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTC
CCTTCCTCCTCCTTATTCATTATCCTCGGGGCGGGTCTCTCTTTCTTCTC
CCCTCCTCCTCCCTCTTGCCCATCTTGACCGACCGACCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCCCCCCTCCTTC
CCCTGCAGGCAATACGAGCAGCAAATGGAGGACGAGGAAAGGTTGAAGCA
ACAAAGGTAAGCCCCGCCCCTCCCTCTGACTTTCTCTCCGATCCGACGCA
CTCGACTCCTCCAATGCCTCCTTCCCTACCTTCCCTCCCTCTCACAGGGA
GATGGAGTTTGACGCCACGTGGACCGCCGAAGACAGGCGGGAGGGAAGGG
TGGGCAACTGGCGAGATTTTCAAAAAGGACCCGGCGCGAAACGGGCCAAG
GTCCAGGTATGTGTGATGACATGAATACCCTCCCTTCCCTCTCTCCATCC
CTCCCTCTTTGCCTCCCTCCTTCCCTCCTGCGTTCCTCCCTCCCTCTCTT
TTCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCTCTTCCCTCCTGTGTT
TACTGACGGTTTCATTTTCCCCTTGCTCTTCTCACACACCCCACACTCTG
CCTCCCTTCCTATTCCTCGCACGTTCATGCACTCCCCAGTCGTGGACGGT
GGAGGAAAATGCGAAAAACAAACCCAAGTTCGGGCAATCGAGCAAGGATG
AATGGAAGAAAAATTGGAAGTAGAGAGAGAATAGGGACGAAGATGGAGGT
GGATCAAAGAGAGAATCGTACGGAAGAAGGGAAGGAGGGAATGGAGAAGA
AATGAAGAAAAAGGATGGAGGAGGTATAGTAATAGAAGGAGGAGGAGCTA
CGGGAGGGAGGGAGGACTTTAAGACGAGGGGGACATGTGCATAAGGGAAT
AAAGGCAGGATAAGCGCAAAAGAATCGGAGATGGAAAGACTACCACCATC
ACCATCACCATCAGAATCTTTTTATACAATTATATACTCGACATA back to topCoding sequence (CDS) from alignment at chr19:739810..743604+ >NO19G02520.2 ID=NO19G02520.2|Name=NO19G02520.2|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr19:739810..743604+ (Nannochloropsis oceanica)
ATGAGCGACAGTGAGGCGGCCGCCGGCGGCATGGACCAACCCTTTCCTCC
GGAACTCAAAGGGGAGGAGGCCAGGCAGCAGCAAGGACAGGAGGCACAGA
AAAAGGAGGAGACACAGGAGGAGGATGGAGAAGAAGAGCAGTACCGTGTG
ATGGCAGAGGGGTACAAGGACGAAGGGAATGCGGCCTTCAAGGAGGGGAG
GTATAAAGAAGCCATCGCCCTCTACACGCAGGGTCTGGATATTGACCCCG
ACAACCACGTGCTGTATAGCAACCGAAGCGCGGCGTATTTGAAGGAGCAG
GAGCGGGGAAAGGCTTTGAAGGACGCGGAGAAGCTGATGGAGATAAAGCC
TGACTGGCCCAAGAGTTATTCCCGAAAAGGAGCCGCCCAACATGCCCTCA
CGCGCTATGCACTCGCCATCGAGACGTACCAGGAAGGCATCGCTTTATTC
CCTACCGATAAAGCGCTCGTGGACGGGCTCAAGGCCGCAGAGGAGGCCTA
CAACATCGACAAACAAGCCCGCTTCGAGCAAGCAAAGAGGGAACGAGAAA
CAGCAGAGCATCGAAAAAAGAAAGAAGCCGAAGCCAAGGCAGCCGCAGAG
AATAAGGAGAAGGAAGCGGAGGAGCCACCCCCTACAGATGACCTCGCTTC
CTTCTTCTCCCTGGTAGGGGCCACAGGAACAGATCCTAAACAGACCATAT
CCGGCGCTAACGTCCAACGAGACGTTAAAAAAGCGTTGAAGGAGGACTAC
GCCAAGGCCGATCTCGGCACGTCCGAATCTCAAATAGCTCGTCTTCTTCA
ACCAAATTATTCATGGAAGAACCTCAATCCTTACTCTGTCCTCTCCCTCG
GGATCGATGCCACGGAGGATGACATTAAGCTTCGCTATCGCAAGCTTTCT
ACGCTCGTTCACCCTGATAAATGCCTGGAGATAGAAGAAGCGCGTGACGC
CTTCGAAGAGGTGAAAAAGGCTTACAACCAGCTCATGGACGAGGAGCGAC
GGGCCTGGTGTATTGCCACCATCCAACAAACACAAAAACGCACAATTAAA
GACAGGAAGCACAAGCTCTCGAAAGGCATGACTCTTCAAGAGCTCGGATC
GGAACAAGCCGCGATCCAAAAAGCCATCATGATGGAGTTCGCAGAGGTGG
AAATGAGAAAGAAGAACGCGGAGAAGCATGCCCAAGCCTTCAAGCAATAC
GAGCAGCAAATGGAGGACGAGGAAAGGTTGAAGCAACAAAGGGAGATGGA
GTTTGACGCCACGTGGACCGCCGAAGACAGGCGGGAGGGAAGGGTGGGCA
ACTGGCGAGATTTTCAAAAAGGACCCGGCGCGAAACGGGCCAAGGTCCAG
GTATGTGTGATGACATGA back to top
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