NO19G02510.1, NO19G02510.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02510.1
Unique Name	NO19G02510.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2086
Alignment location	chr19:737557..739642 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:737557..739642 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO19G02510.1 vs.

BLAST of NO19G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02510	NO19G02510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02510.1	NO19G02510.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02510.1.cds1	NO19G02510.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:737557..739642-
coding sequence from alignment at chr19:737557..739642-

mRNA sequence

>NO19G02510.1 ID=NO19G02510.1|Name=NO19G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp
GGGTAGTGTAAGATGGAAAGATTGCAAAAAATTACATATGTAGCGCTGAG
GAGAAACACTCAGCAAGGGCCTTACTTCTATTGCTTTTATGAATTTTGCT
TGGAAGAGCCCCGCCTTTATTTTCCCCCCTTCATTTCCTTCAGTAATATT
TTCACCTTCTACATGGGCCCAGGGCCCTTGCCCTTCCCTTCTTCTTTTCT
TGTTATGTCGTGCCATGCACAGAGACATAGCGCCCATCACCACTTCTCAT
TGCCAGAGACAAAATATAGTTATCAGTACCTTGCCTGGGGAAGCTTTTGG
AAGAGGAGACATGCAGGGTGTCGGGTGGATATAACACTATCCCTCCCGCA
CACACATTACCCGGTCCAGTATGAATGGAGGCCTCTATCAATTCTTCTTC
TTCTTGTTGTTGTCTCCGCATCGGCTGTGGTTAAGAACCTTGCGTCTGCA
AGTGCGTCTGCAAGCCGGAGGGGGGCGACAATGGCCATACGCTCCTCCTT
CTCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTTTTCCCCCTCCCGAA
TAGTGTAAGGGAGGCTTAGACACTTTAGCTCCCCCATACTGGGGTGCGAA
TGCACGAACACCGTAAAGAGGTGGAAAGTACCAGGTACAAGGCCAAGGCT
CGGGAATACTACTACTAGTGCCTTCCACATAGTCCAGGGCGATGGTGAAG
TCACTGCCAGGGAGGGGACCGCGTCTCCTCGGGCTTGTTATTCTTTACAG
CCCATCGTATTTTTTCGAGGGTGATGGCAACGGGGATGAGCAGTTTGTGT
TTCTCCTCCAGAGGATGTATGGCATGTGAGTCGGAAAGGCTGGGCCAAGG
GAATTCGTCATGCTGCTTCGCGTACCGGTTGCTGACCTCCCACGGGTAGG
AGTGGGAGGAGTCGGGGCGGCCGGAGCGGCAACAGGAGGAGGAGGAGAGG
GAATGAGAGGAATCCCCACTATACTCTCTTTACCCGGAGAACAGGCAGCA
CGAGCACTAGCAACCATTGGTAGAATTCGTGCGGCACTTGCTGGAGGAAT
GGAGAAGGGAAAGAGAAAGATAGTGAGGCCGCGCCGACGAGGGGGAAGAG
GTGGTGGAGAAGGAGGTGGAGGAGGAGGTGGTGGAGGAGGAGGAGGAGGA
GGGGAAGGAGGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGG
GGAAGGAGGAGGAGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGGGAGGAG
GAGGAGGGAAAGGAGGAGGAGGGGGAGGAGGAGGAGGACGAGAAGGAGGA
GGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGACGAGAAGGAGGACG
AGAAGGAGGAGGAGGAGGGGGAGGAGGGGGGGATGAGGAGGGGGAGGATG
AGGAGGGGGAGGAGGAGGACGAGAAGGCGGAGGCGGAGGAGGCGGAGGAG
GCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGCGGAGGTGGCGGAGGA
GGAGGGGGTGGAGGAGGAGGGGGTGGAGGCGATGGAATTAGAGGAGAAGG
AGGCGGAGGAGAACGAGGACGAGGCAGAGGAGGAGGTGATGGGCGGGCCA
TCCGAGGACTGTATTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGAC
GGCAATGGGGCACGTAACATCGTACGGGTGTACAGGAGTATGGTCCGAGG
GGAAGCTCGTCCCCATGATCTCCGGTTTGGTCAACCGCGGCAGGATATAG
GGACACTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTCC
CCCCTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCG
AAAAACCTATCAAAGTCGCTAGTAAACCTCGGATAATGAATAAGGGATGA
CAACAATTTATTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTTGAAGAC
GTTAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCAACTCAAAA
GAACTATGTATGTATCTACCACTTCGTTATTTCCACTCTTTTTTGCTAGC
GTCGTCCTATGCTACAACTGGTTTCCCTCCCTCCCT

protein sequence of NO19G02510.1

>NO19G02510.1-protein ID=NO19G02510.1-protein|Name=NO19G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MLLRVPVADLPRVGVGGVGAAGAATGGGGEGMRGIPTILSLPGEQAARAL
ATIGRIRAALAGGMEKGKRKIVRPRRRGGRGGGEGGGGGGGGGGGGGGEG
GGGGGGEGGGGGGGEGGGGGGGKGGGGGGGGGGKGGGGGGGGGREGGGGG
GGGGGGGGGREGGREGGGGGGGGGDEEGEDEEGEEEDEKAEAEEAEEAEA
EEAEEEAEAEVAEEEGVEEEGVEAMELEEKEAEENEDEAEEEVMGGPSED
CIGVTPVNSSCLGTAMGHVTSYGCTGVWSEGKLVPMISGLVNRGRI*

mRNA from alignment at chr19:737557..739642-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02510.1 ID=NO19G02510.1|Name=NO19G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp|location=Sequence derived from alignment at chr19:737557..739642- (Nannochloropsis oceanica)
GGGTAGTGTAAGATGGAAAGATTGCAAAAAATTACATATGTAGCGCTGAG
GAGAAACACTCAGCAAGGGCCTTACTTCTATTGCTTTTATGAATTTTGCT
TGGAAGAGCCCCGCCTTTATTTTCCCCCCTTCATTTCCTTCAGTAATATT
TTCACCTTCTACATGGGCCCAGGGCCCTTGCCCTTCCCTTCTTCTTTTCT
TGTTATGTCGTGCCATGCACAGAGACATAGCGCCCATCACCACTTCTCAT
TGCCAGAGACAAAATATAGTTATCAGTACCTTGCCTGGGGAAGCTTTTGG
AAGAGGAGACATGCAGGGTGTCGGGTGGATATAACACTATCCCTCCCGCA
CACACATTACCCGGTCCAGTATGAATGGAGGCCTCTATCAATTCTTCTTC
TTCTTGTTGTTGTCTCCGCATCGGCTGTGGTTAAGAACCTTGCGTCTGCA
AGTGCGTCTGCAAGCCGGAGGGGGGCGACAATGGCCATACGCTCCTCCTT
CTCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTTTTCCCCCTCCCGAA
TAGTGTAAGGGAGGCTTAGACACTTTAGCTCCCCCATACTGGGGTGCGAA
TGCACGAACACCGTAAAGAGGTGGAAAGTACCAGGTACAAGGCCAAGGCT
CGGGAATACTACTACTAGTGCCTTCCACATAGTCCAGGGCGATGGTGAAG
TCACTGCCAGGGAGGGGACCGCGTCTCCTCGGGCTTGTTATTCTTTACAG
CCCATCGTATTTTTTCGAGGGTGATGGCAACGGGGATGAGCAGTTTGTGT
TTCTCCTCCAGAGGATGTATGGCATGTGAGTCGGAAAGGCTGGGCCAAGG
GAATTCGTCATGCTGCTTCGCGTACCGGTTGCTGACCTCCCACGGGTAGG
AGTGGGAGGAGTCGGGGCGGCCGGAGCGGCAACAGGAGGAGGAGGAGAGG
GAATGAGAGGAATCCCCACTATACTCTCTTTACCCGGAGAACAGGCAGCA
CGAGCACTAGCAACCATTGGTAGAATTCGTGCGGCACTTGCTGGAGGAAT
GGAGAAGGGAAAGAGAAAGATAGTGAGGCCGCGCCGACGAGGGGGAAGAG
GTGGTGGAGAAGGAGGTGGAGGAGGAGGTGGTGGAGGAGGAGGAGGAGGA
GGGGAAGGAGGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGG
GGAAGGAGGAGGAGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGGGAGGAG
GAGGAGGGAAAGGAGGAGGAGGGGGAGGAGGAGGAGGACGAGAAGGAGGA
GGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGACGAGAAGGAGGACG
AGAAGGAGGAGGAGGAGGGGGAGGAGGGGGGGATGAGGAGGGGGAGGATG
AGGAGGGGGAGGAGGAGGACGAGAAGGCGGAGGCGGAGGAGGCGGAGGAG
GCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGCGGAGGTGGCGGAGGA
GGAGGGGGTGGAGGAGGAGGGGGTGGAGGCGATGGAATTAGAGGAGAAGG
AGGCGGAGGAGAACGAGGACGAGGCAGAGGAGGAGGTGATGGGCGGGCCA
TCCGAGGACTGTATTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGAC
GGCAATGGGGCACGTAACATCGTACGGGTGTACAGGAGTATGGTCCGAGG
GGAAGCTCGTCCCCATGATCTCCGGTTTGGTCAACCGCGGCAGGATATAG
GGACACTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTCC
CCCCTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCG
AAAAACCTATCAAAGTCGCTAGTAAACCTCGGATAATGAATAAGGGATGA
CAACAATTTATTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTTGAAGAC
GTTAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCAACTCAAAA
GAACTATGTATGTATCTACCACTTCGTTATTTCCACTCTTTTTTGCTAGC
GTCGTCCTATGCTACAACTGGTTTCCCTCCCTCCCT

Coding sequence (CDS) from alignment at chr19:737557..739642-

>NO19G02510.1 ID=NO19G02510.1|Name=NO19G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr19:737557..739642- (Nannochloropsis oceanica)
ATGCTGCTTCGCGTACCGGTTGCTGACCTCCCACGGGTAGGAGTGGGAGG
AGTCGGGGCGGCCGGAGCGGCAACAGGAGGAGGAGGAGAGGGAATGAGAG
GAATCCCCACTATACTCTCTTTACCCGGAGAACAGGCAGCACGAGCACTA
GCAACCATTGGTAGAATTCGTGCGGCACTTGCTGGAGGAATGGAGAAGGG
AAAGAGAAAGATAGTGAGGCCGCGCCGACGAGGGGGAAGAGGTGGTGGAG
AAGGAGGTGGAGGAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGGGAAGGA
GGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGGGAAGGAGG
AGGAGGAGGAGGAGGGAAAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGA
AAGGAGGAGGAGGGGGAGGAGGAGGAGGACGAGAAGGAGGAGGAGGAGGG
GGAGGAGGAGGAGGAGGAGGAGGAGGACGAGAAGGAGGACGAGAAGGAGG
AGGAGGAGGGGGAGGAGGGGGGGATGAGGAGGGGGAGGATGAGGAGGGGG
AGGAGGAGGACGAGAAGGCGGAGGCGGAGGAGGCGGAGGAGGCGGAGGCG
GAGGAGGCGGAGGAGGAGGCGGAGGCGGAGGTGGCGGAGGAGGAGGGGGT
GGAGGAGGAGGGGGTGGAGGCGATGGAATTAGAGGAGAAGGAGGCGGAGG
AGAACGAGGACGAGGCAGAGGAGGAGGTGATGGGCGGGCCATCCGAGGAC
TGTATTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCAATGGG
GCACGTAACATCGTACGGGTGTACAGGAGTATGGTCCGAGGGGAAGCTCG
TCCCCATGATCTCCGGTTTGGTCAACCGCGGCAGGATATAG

Synonyms

Publications