NO19G02500.1, NO19G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02500.1
Unique NameNO19G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1029
Alignment locationchr19:734508..737553 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:734508..737553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02500.1 vs.
Match: CBJ48840.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 268.1 bits (684), Expect = 3.600e-68
Identity = 138/283 (48.76%), Postives = 188/283 (66.43%), Query Frame = 0 
Query:    6 NARAASDSQRAAPDPENSVEFCVKPAEDLVLEGTHKSLLRVRANTPYSCIMLKSQRFASLFRHYAKHHGLDKDTLVFFFTEELQNDDTPESVHMQRNDEIVVRTRKAPKSNI----------PICADSTYFSHFRSLLFDREDADMVFVVGLAKDQVPAHKVILTARSDYFRALFRKGGMKESEEGVMVVESYTLPTLRRMLEFIYTNRVESLSACTPTEVIDLLGLADEYLLTDLKCLCEKVGASMIDIDGVGRLLCAADRHGCEGLKEHCIDFVLEHSDQV 279
            NA AA  + R     +  VEF VKPAEDL+LEG+ +S++RVRA TPYSC+MLK+QRF+SLFRHYAKHHGL KD L ++FTEELQN+DTPE+V +   DEIVVR RK+   ++           +C D  +     SLL D E  D+ F VG ++ +V AHK  L ARS+YFR++FRKG M+ESE   + V  +   TLR+MLE+IYTNRV+ +   +  EVI LL LA+E+LL +LK LCE     ++ +  V ++L AA+R+  E LK  C+ +V ++  +V
Sbjct:    5 NANAAPGATRPV---DQHVEFVVKPAEDLILEGSERSVIRVRAGTPYSCLMLKNQRFSSLFRHYAKHHGLRKDDLAYYFTEELQNEDTPETVFLLVRDEIVVRRRKSKSDSVSDDEAEVDPDSLCPDDMFIEQMGSLLDDDEHCDVTFFVGPSRTEVKAHKTHLVARSEYFRSMFRKGAMRESETSEVTVMEHDEATLRQMLEYIYTNRVKDMPGLSADEVIKLLALANEFLLEELKVLCEHSARKIVSVANVAKMLLAAERYQAETLKSSCLAYVQKNMPEV 284
The following BLAST results are available for this feature:
BLAST of NO19G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48840.13.600e-6848.76conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02500NO19G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02500.1NO19G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02500.1.cds1NO19G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds2NO19G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds3NO19G02500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds4NO19G02500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds5NO19G02500.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds6NO19G02500.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds7NO19G02500.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds8NO19G02500.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds9NO19G02500.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds10NO19G02500.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds11NO19G02500.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02500.1.cds12NO19G02500.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02500.1 ID=NO19G02500.1|Name=NO19G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
CCACAGACAGACATAATTTGTCCCTCCTCCTCATCAGGCATGGCCAATCG
TCCGAATGCCCGCGCGGCCAGCGACTCGCAGCGCGCGGCACCGGACCCCG
AGAACAGCGTGGAGTTTTGTGTGAAGCCAGCGGAAGACTTGGTTTTGGAA
GGGACGCATAAGAGCTTGCTGAGGGTCCGGGCCAACACTCCCTATAGTTG
CATCATGCTCAAGAGTCAGCGATTCGCCTCCCTCTTCCGACACTACGCCA
AACACCACGGCCTCGACAAAGACACCCTCGTCTTTTTTTTCACTGAGGAG
CTCCAGAACGACGACACGCCCGAGAGCGTACACATGCAGCGCAACGACGA
AATTGTCGTCCGCACCCGCAAAGCCCCCAAAAGCAATATTCCCATCTGCG
CCGACTCCACCTATTTCTCCCACTTCCGCTCCCTCCTCTTCGATCGTGAG
GATGCCGACATGGTTTTTGTCGTTGGACTTGCCAAGGACCAGGTGCCCGC
CCACAAAGTCATCCTCACCGCTCGGAGCGACTACTTCCGGGCGTTATTCC
GAAAAGGCGGAATGAAGGAAAGCGAGGAAGGAGTCATGGTGGTAGAGAGC
TACACCCTTCCCACCCTCCGACGGATGCTGGAGTTCATCTACACCAATCG
CGTGGAGAGTCTCTCGGCTTGCACGCCCACAGAGGTCATCGACCTCCTCG
GCCTGGCCGATGAATACCTCTTGACGGACCTCAAGTGCCTCTGCGAGAAG
GTGGGCGCCAGCATGATCGATATCGACGGCGTCGGAAGGTTGCTCTGCGC
TGCTGATCGTCACGGGTGCGAAGGACTCAAGGAGCACTGCATTGACTTCG
TGTTGGAGCATTCGGATCAAGTGATGGGCAAAGAAGACGACAAGTCGCTC
ACGCCTTTTTTGAAGGAGGTGGAGAGAGTGCCCAACCTCCTCGCAACGGT
TCTACGGGCCGTTACCGCGGTTCATACCAAGAAACGGAAGAGGAGTGATC
CGAAGACTGTCTAGGGAGGGGGGGAGGGA
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protein sequence of NO19G02500.1

>NO19G02500.1-protein ID=NO19G02500.1-protein|Name=NO19G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MANRPNARAASDSQRAAPDPENSVEFCVKPAEDLVLEGTHKSLLRVRANT
PYSCIMLKSQRFASLFRHYAKHHGLDKDTLVFFFTEELQNDDTPESVHMQ
RNDEIVVRTRKAPKSNIPICADSTYFSHFRSLLFDREDADMVFVVGLAKD
QVPAHKVILTARSDYFRALFRKGGMKESEEGVMVVESYTLPTLRRMLEFI
YTNRVESLSACTPTEVIDLLGLADEYLLTDLKCLCEKVGASMIDIDGVGR
LLCAADRHGCEGLKEHCIDFVLEHSDQVMGKEDDKSLTPFLKEVERVPNL
LATVLRAVTAVHTKKRKRSDPKTV*
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mRNA from alignment at chr19:734508..737553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02500.1 ID=NO19G02500.1|Name=NO19G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3046bp|location=Sequence derived from alignment at chr19:734508..737553+ (Nannochloropsis oceanica)
CCACAGACAGACATAATTTGTCCCTCCTCCTCATCAGGCATGGCCAATCG
TCCGAATGCCCGCGCGGCCAGCGACTCGCAGCGCGCGGCACCGGACCCCG
AGAACAGCGTGGAGTTTTGTGTGAAGGTGAGGAGGAGGGAGGAGGAGGAG
CAAAGGGGAGGGGAAGTCGAGGACGGCAGCGAGTGCTTAGTGCCTATATA
GATGAGGCCCCACACGTGCAAGTAGCCTAAACTGGGGAATTTTCTGGAGA
AAGAGGGGAGAAGCGGAATGTGGTGGAGGAATGAAAGGTACACAGTTTCT
ACCTCTGTCCATACCGCGTCTCACCACTTCAACCTTCCTTCTTTCCCTTC
CTCCCTCCCTCCCTCTTTTCCATCACGCACTCACAGCCAGCGGAAGACTT
GGTTTTGGAAGGGACGCATAAGAGCTTGCTGAGGGTCCGGGCCAACACTC
CCTATAGGTGAGAGGGAGAGAAGGAGATGAGGGAGGGGAGAAGAGTGAGG
GAAGAGGAGGGAGGGAGGGAGGGAAGAGGAGGGAGTTAGGGAGGCAGGTA
GAGGAGGGAGATTGGGAAGCCCCTGCCAAGCCCCTGCCAAGCTTATATGG
GTTGATAGAGTGCCCTGTCAGTGTGTGTTTTGATGGGTCAAGAGCGATGG
TGCTCACTCGCTCTTCCCGCCCGCCCTCTCTTCCTCCTTTCCGCCTTCCC
TCCCTTCCCCCCCCGCCCCAGTTGCATCATGCTCAAGAGTCAGCGATTCG
CCTCCCTCTTCCGACACTACGCCAAACACCACGGCCTCGGTAAGCACTCT
CTCCCTCTCCCCCCTGCCCTCTCTTTCCTTCCTTCCTCGCTCTACCCATC
CATTCTTCCTTCCATCTTCCCTCCCTCCCTCCTCGCGTCCACCCAGACAA
AGACACCCTCGTCTTTTTTTTCACTGAGGAGCTCCAGAACGACGACACGC
CCGAGAGCGTACACATGCAGGTACTCCCTCCCTCCCTCCCTTTCGCCCTC
CTCCACTTCTCTCACTCTTACACCACTCCTTCTCCCTCCCTCCCCTCCAG
CGCAACGACGAAATTGTCGTCCGCACCCGCAAAGCCCCCAAAAGCAATAT
TCCCATCTGCGCCGGTACGTGCCTGCCTCTGTCTGTGTGTGAGAGAGAGT
GTGTGTGAGAGAGTGTGTGTGTTTGTCGTACTCGCATGTATGTGAGTGAA
AGAGTGTTTGTCGTACTGTGTGTGGGCAAAGCCCCCAAGAGCAATTTTCC
CATCTGCGCCGGTACGTGCCTGCCTCCGCCCACCTCAGAGGGAGGAAGGA
AGGAAGGGAGAGAGGTAGAGATGTTGTTAATGCATTACACCTGTTCAAAT
ACCTCCCCCCCTCCCTCCCCCCCTCCCTTGAAGACTCCACCTATTTCTCC
CACTTCCGCTCCCTCCTCTTCGATCGTGAGGATGCCGACATGGTTTTTGT
CGTTGGACTTGCCAAGGACCAGGTGCCCGCCCACAAAGTCATCCTCACCG
CTCGGTACGCCCTCTCCCTCCCTCCCTCCCTCCTTTCGTTCATTTGCCTA
CTACCGTTTTTCTACTTTCTCTACCCTCCATCCCTCCCTCCCTCCCTCTT
TCTTTCCTTCCTTCTCTGCCCTCCGCCCACCACTTTTTCTCTACCTCTTA
CGCCCCCCCCCCCCCCTTCCCTCCCTCCCTTCCTCGACAGGAGCGACTAC
TTCCGGGCGTTATTCCGAAAAGGCGGAATGAAGGAAAGCGAGGAAGGAGT
CATGGTGGTAGAGAGCTACACGTAAGGAGGGAGGGGGGGAGGGAGGGAGG
GAGGGAGGAATGCAAGAAAGCGAGGAAGACGTCACGGTGATAAAGATCTA
TACGGAAGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGGTAGTATGAGTA
GGATATCTACTCACTCTCTCACTTTGCCCTCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCAGCCTTCCCACCCTCCGAC
GGATGCTGGAGTTCATCTACACCAATCGCGTGGAGAGTCTCTCGGCTTGC
ACGCCCACAGAGGTCATCGACCTCCTCGGCCTGGCCGATGAATACCTCTT
GACGGTTCGTCCTCCCTCTCGCCCTCCCTCCCGCCCTCCTTCCGTTTCGT
CTTTGCGTTGCTTGTTAGGCTTGGCCTTCTCTCCTTCCCTCCCTCCTTCC
CTCCCTCCTTCCCTCATTCCTCTCGTCGCATTTGCCTCCTCCACAGAACG
CTCATTTCTTCCCCCCTTCCGCTTCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCAGGACCTCAAGTGCCTCTGCGAGAAGGTGGGCGCCAG
CATGATCGATATCGACGGCGTCGGAAGGGTATGCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCTTCATTGTAGGATTACACTCTCCCATCCCC
TCACTGCCCTGTCCTCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTC
ACTCACTCAGTTGCTCTGCGCTGCTGATCGTCACGGGTGCGAAGGACTCA
AGGTAATCATCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCCCT
TCCTTCCTCCTTCCTTTTCTCCCTTCTCCTTCTAAAAGGTGACCTCACCC
TTCCTCCCTCCCTCCCTCTCTCCAGGAGCACTGCATTGACTTCGTGTTGG
AGCATTCGGATCAAGTGATGGGCAAAGAAGACGACAAGTCGCTCACGCCT
TTTTTGAAGGTAGGGAAGGAGGGAGGGAAGGAGGAAGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGAGAGGAGGAGAGGGGAAGAGACATTGGAAATCAAA
GACGGCAAGACACTCACCCCGTCATACACTCCCCTCCCTCCCTCCGTCCC
TCCCTCCGCTCCTCCCTCCCTCCCTCCCTCAGGAGGTGGAGAGAGTGCCC
AACCTCCTCGCAACGGTTCTACGGGCCGTTACCGCGGTTCATACCAAGAA
ACGGAAGAGGAGTGATCCGAAGACTGTCTAGGGAGGGGGGGAGGGA
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Coding sequence (CDS) from alignment at chr19:734508..737553+

>NO19G02500.1 ID=NO19G02500.1|Name=NO19G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr19:734508..737553+ (Nannochloropsis oceanica)
ATGGCCAATCGTCCGAATGCCCGCGCGGCCAGCGACTCGCAGCGCGCGGC
ACCGGACCCCGAGAACAGCGTGGAGTTTTGTGTGAAGCCAGCGGAAGACT
TGGTTTTGGAAGGGACGCATAAGAGCTTGCTGAGGGTCCGGGCCAACACT
CCCTATAGTTGCATCATGCTCAAGAGTCAGCGATTCGCCTCCCTCTTCCG
ACACTACGCCAAACACCACGGCCTCGACAAAGACACCCTCGTCTTTTTTT
TCACTGAGGAGCTCCAGAACGACGACACGCCCGAGAGCGTACACATGCAG
CGCAACGACGAAATTGTCGTCCGCACCCGCAAAGCCCCCAAAAGCAATAT
TCCCATCTGCGCCGACTCCACCTATTTCTCCCACTTCCGCTCCCTCCTCT
TCGATCGTGAGGATGCCGACATGGTTTTTGTCGTTGGACTTGCCAAGGAC
CAGGTGCCCGCCCACAAAGTCATCCTCACCGCTCGGAGCGACTACTTCCG
GGCGTTATTCCGAAAAGGCGGAATGAAGGAAAGCGAGGAAGGAGTCATGG
TGGTAGAGAGCTACACCCTTCCCACCCTCCGACGGATGCTGGAGTTCATC
TACACCAATCGCGTGGAGAGTCTCTCGGCTTGCACGCCCACAGAGGTCAT
CGACCTCCTCGGCCTGGCCGATGAATACCTCTTGACGGACCTCAAGTGCC
TCTGCGAGAAGGTGGGCGCCAGCATGATCGATATCGACGGCGTCGGAAGG
TTGCTCTGCGCTGCTGATCGTCACGGGTGCGAAGGACTCAAGGAGCACTG
CATTGACTTCGTGTTGGAGCATTCGGATCAAGTGATGGGCAAAGAAGACG
ACAAGTCGCTCACGCCTTTTTTGAAGGAGGTGGAGAGAGTGCCCAACCTC
CTCGCAACGGTTCTACGGGCCGTTACCGCGGTTCATACCAAGAAACGGAA
GAGGAGTGATCCGAAGACTGTCTAG
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Synonyms
Publications