NO19G02410.1, NO19G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02410.1
Unique NameNO19G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr19:700838..702345 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:700838..702345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02410.1 vs.
Match: EWM23732.1 (cytochrome c1 heme lyase [Nannochloropsis gaditana])

HSP 1 Score: 390.2 bits (1001), Expect = 6.300e-105
Identity = 209/328 (63.72%), Postives = 242/328 (73.78%), Query Frame = 0 
Query:    2 ARAADTEAGGGCPVKGSGSSNSSASNESSATPTSSTNVGIFSGIGAWFGSGKPTAGGNPNPSSSSSTDGCPVKG--SPPP--PINPLNNERLYSQSPHATQTVPLSTSRQVSSIPKSDYTPKHQPKWVEDKWVYPSEQQYYNAMKSKGFNPLPQDVHIILAIHNAVNEQGWNQLLEWEKVHSATPPKLKRFMGRPQDLSPKAALLWITGQANRPFDRHDWVVERENGKEVRYVIDFYTGQTDPKDPKPVSMHLDVRPALDSGDALKMRVGKAVDEWKEEWFGREGGKEGVVPSWLAAAAAMVG-----GEGKKEGGAPRAVPGDARAA 321
            ++A  TE    C VK     NSS  ++    P + TN G FS +  WF    P+     +    S++ GCPV+G  SPP   P+NPLNNER YSQ P  +Q VPLSTSR++SSIPKSD+TPKHQPKW  DKWVYPSEQQY+NAMKSKGF+PLPQDV IILAIHNAVNEQGW ++LEWE    +TPPKLKRFMGRPQDLSPKAA LW+ G  N+PFDRHDWVVER +G EVRYVIDFYTGQTD KDPKPVSMHLDVRPALDS  A++MRVG+ VDEWKEEWFG+EGGK+ ++P+W A   AMVG     GEG KEG     VPG   A+
Sbjct:    6 SQARGTEPSEACLVK-----NSSNRSDPVRHPPTGTN-GFFSALRGWFHPSNPS----DSTELESNSSGCPVQGRASPPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLWMCGY-NKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRVGRTVDEWKEEWFGKEGGKDRMLPAWTATFTAMVGGREGVGEGGKEGERGGVVPGAGGAS 322
The following BLAST results are available for this feature:
BLAST of NO19G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23732.16.300e-10563.72cytochrome c1 heme lyase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02410NO19G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02410.1NO19G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02410.1.cds1NO19G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02410.1.cds2NO19G02410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02410.1 ID=NO19G02410.1|Name=NO19G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
GTCTATGTAAACGTCAATGCTTTCTTTTGCTAACTTAAATTGCTGCCTTG
AATGTGTGTCAAGTCTTTTCCATGACACTCATGCACTCTATGTAAGTAAC
CGGGAGGTTTAAGAGTGCAGCGAGTCTTTGCACAAAGCCCACAATGCTTG
CAATGGATGCTGCGGGACTTCCCTCTCAAAATATGTGACTGGTGGCAGGG
TGTGTGGAGCGTGTGCGTTTTGGAATGGGACGGTAGGAGGCAGGCATTGT
TTTTTTTCACTCGCCACGTACGCGTGCTGCTTCTATCATACCCGCACCAC
CCACACGCTAAACACCACTCAACCACACAGAGAATCCCAAGAAGAGAAAA
TGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGGC
AGTGGCAGCAGCAACAGTAGCGCAAGCAACGAGAGCTCTGCCACGCCCAC
TTCCAGCACAAATGTTGGTATCTTCTCTGGTATTGGTGCCTGGTTTGGCA
GCGGCAAGCCCACCGCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAGC
ACCGACGGGTGTCCGGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTCT
CAACAACGAACGACTGTACTCCCAATCGCCCCATGCCACGCAAACTGTTC
CCCTATCGACGTCTCGGCAAGTCTCGTCTATACCTAAGTCTGACTACACA
CCTAAGCACCAACCTAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCGA
GCAGCAGTACTATAACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCCC
AAGACGTGCACATCATCCTGGCCATCCACAACGCGGTGAACGAGCAGGGC
TGGAATCAACTTTTAGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCAA
GCTGAAGCGTTTCATGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCGC
TGCTGTGGATTACCGGGCAAGCCAACCGGCCGTTTGACCGACACGATTGG
GTGGTGGAGAGGGAAAATGGGAAGGAAGTGCGGTATGTCATTGATTTTTA
CACGGGGCAGACTGACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTGG
ACGTGAGGCCTGCCCTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGGA
AAGGCAGTGGACGAATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGAA
GGAGGGAGTGGTACCGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGAG
GGGAGGGAAAGAAGGAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGCG
CGGGCGGCCACCAAGTGAGTGTGTTGTAATTGAAAGTCAATGACAAGCGA
AGAAGAGCGCAATGCTTGAATGAAAGAGAGAGAGAGGGGGGATGAGAGCC
GGTTGTGATATGGGTACAG
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protein sequence of NO19G02410.1

>NO19G02410.1-protein ID=NO19G02410.1-protein|Name=NO19G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MARAADTEAGGGCPVKGSGSSNSSASNESSATPTSSTNVGIFSGIGAWFG
SGKPTAGGNPNPSSSSSTDGCPVKGSPPPPINPLNNERLYSQSPHATQTV
PLSTSRQVSSIPKSDYTPKHQPKWVEDKWVYPSEQQYYNAMKSKGFNPLP
QDVHIILAIHNAVNEQGWNQLLEWEKVHSATPPKLKRFMGRPQDLSPKAA
LLWITGQANRPFDRHDWVVERENGKEVRYVIDFYTGQTDPKDPKPVSMHL
DVRPALDSGDALKMRVGKAVDEWKEEWFGREGGKEGVVPSWLAAAAAMVG
GEGKKEGGAPRAVPGDARAATK*
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mRNA from alignment at chr19:700838..702345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02410.1 ID=NO19G02410.1|Name=NO19G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp|location=Sequence derived from alignment at chr19:700838..702345- (Nannochloropsis oceanica)
GTCTATGTAAACGTCAATGCTTTCTTTTGCTAACTTAAATTGCTGCCTTG
AATGTGTGTCAAGTCTTTTCCATGACACTCATGCACTCTATGTAAGTAAC
CGGGAGGTTTAAGAGTGCAGCGAGTCTTTGCACAAAGCCCACAATGCTTG
CAATGGATGCTGCGGGACTTCCCTCTCAAAATATGTGACTGGTGGCAGGG
TGTGTGGAGCGTGTGCGTTTTGGAATGGGACGGTAGGAGGCAGGCATTGT
TTTTTTTCACTCGCCACGTACGCGTGCTGCTTCTATCATACCCGCACCAC
CCACACGCTAAACACCACTCAACCACACAGAGAATCCCAAGAAGAGAAAA
TGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGGC
AGTGGCAGCAGCAACAGTAGCGCAAGCAACGAGGTACGTCTTGATAGCCC
CTCTTCTCTTTCTACCCCTCGTCTACCACCTCATCCAATGCACCACCACC
ACTACCATACGCGTATCGCCAGAGCTCTGCCACGCCCACTTCCAGCACAA
ATGTTGGTATCTTCTCTGGTATTGGTGCCTGGTTTGGCAGCGGCAAGCCC
ACCGCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAGCACCGACGGGTG
TCCGGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTCTCAACAACGAAC
GACTGTACTCCCAATCGCCCCATGCCACGCAAACTGTTCCCCTATCGACG
TCTCGGCAAGTCTCGTCTATACCTAAGTCTGACTACACACCTAAGCACCA
ACCTAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCGAGCAGCAGTACT
ATAACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCCCAAGACGTGCAC
ATCATCCTGGCCATCCACAACGCGGTGAACGAGCAGGGCTGGAATCAACT
TTTAGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCAAGCTGAAGCGTT
TCATGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCGCTGCTGTGGATT
ACCGGGCAAGCCAACCGGCCGTTTGACCGACACGATTGGGTGGTGGAGAG
GGAAAATGGGAAGGAAGTGCGGTATGTCATTGATTTTTACACGGGGCAGA
CTGACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTGGACGTGAGGCCT
GCCCTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGGAAAGGCAGTGGA
CGAATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGAAGGAGGGAGTGG
TACCGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGAGGGGAGGGAAAG
AAGGAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGCGCGGGCGGCCAC
CAAGTGAGTGTGTTGTAATTGAAAGTCAATGACAAGCGAAGAAGAGCGCA
ATGCTTGAATGAAAGAGAGAGAGAGGGGGGATGAGAGCCGGTTGTGATAT
GGGTACAG
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Coding sequence (CDS) from alignment at chr19:700838..702345-

>NO19G02410.1 ID=NO19G02410.1|Name=NO19G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr19:700838..702345- (Nannochloropsis oceanica)
ATGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGG
CAGTGGCAGCAGCAACAGTAGCGCAAGCAACGAGAGCTCTGCCACGCCCA
CTTCCAGCACAAATGTTGGTATCTTCTCTGGTATTGGTGCCTGGTTTGGC
AGCGGCAAGCCCACCGCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAG
CACCGACGGGTGTCCGGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTC
TCAACAACGAACGACTGTACTCCCAATCGCCCCATGCCACGCAAACTGTT
CCCCTATCGACGTCTCGGCAAGTCTCGTCTATACCTAAGTCTGACTACAC
ACCTAAGCACCAACCTAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCG
AGCAGCAGTACTATAACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCC
CAAGACGTGCACATCATCCTGGCCATCCACAACGCGGTGAACGAGCAGGG
CTGGAATCAACTTTTAGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCA
AGCTGAAGCGTTTCATGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCG
CTGCTGTGGATTACCGGGCAAGCCAACCGGCCGTTTGACCGACACGATTG
GGTGGTGGAGAGGGAAAATGGGAAGGAAGTGCGGTATGTCATTGATTTTT
ACACGGGGCAGACTGACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTG
GACGTGAGGCCTGCCCTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGG
AAAGGCAGTGGACGAATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGA
AGGAGGGAGTGGTACCGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGA
GGGGAGGGAAAGAAGGAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGC
GCGGGCGGCCACCAAGTGA
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Synonyms
Publications