NO19G02360.1, NO19G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02360.1
Unique NameNO19G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr19:676455..676979 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:676455..676979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02360NO19G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02360.1NO19G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02360.1.cds1NO19G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02360.1.cds2NO19G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02360.1 ID=NO19G02360.1|Name=NO19G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
ATGCCGAACGAGGGTAAGGTGGATGCGTGGAGAAGGGATAACGAGAGGGC
CGTCGAGAAACTCACCCGTGGCGACCTTGCCATGTTCCCCTTGCTGGATA
CATTTCGTCGCATTTCCTGGCAGAAGGAGAACACCCATTGCCGTCTGAAT
GAATCGGTGTCGGACAAGCAGGTGGCGTATGTCCTTGCCAAGACGGAGTG
CTATGTGAGACGTTTGTGCCACGGGTTTGTGCTACAGACATCTGAAAATA
AGTGGAGGTGGCCAAATAACCCCAACTGGTCGTCCATGATGTACAAGAGA
CATCGTGATGTCGTGCATAAGGATAGGTCGACATTCGCAGACGTAGACTA
CGATGTGTGGGAATTGAAAAAGTGA
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protein sequence of NO19G02360.1

>NO19G02360.1-protein ID=NO19G02360.1-protein|Name=NO19G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MPNEGKVDAWRRDNERAVEKLTRGDLAMFPLLDTFRRISWQKENTHCRLN
ESVSDKQVAYVLAKTECYVRRLCHGFVLQTSENKWRWPNNPNWSSMMYKR
HRDVVHKDRSTFADVDYDVWELKK*
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mRNA from alignment at chr19:676455..676979+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02360.1 ID=NO19G02360.1|Name=NO19G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp|location=Sequence derived from alignment at chr19:676455..676979+ (Nannochloropsis oceanica)
ATGCCGAACGAGGGTAAGGTGGATGCGTGGAGAAGGGATAACGAGAGGGC
CGTCGAGAAACTCACCCGTGGCGACCTTGCCATGTTCCCCTTGCTGGATA
CATTTCGTCGCATTTCCTGGCAGAAGGAGAACACCCATTGCCGTCTGAAT
GAATCGGTGTCGGACAAGCAGGTGGCGTATGTCCTTGCCAAGACGGAGTG
CTATGTGAGACGTACGTACTTTTGTTTCTGTATCTGTATATGAAGTTTTG
TGTAATTGTGTAAGTGTATGTGCGCATTTGGATGGATGCATAGTGGTAAT
AGCAACATGACCACCCTCCTCTCTCACATTCCCCTCATGTCCCCCATCCA
CACCAACTCAGGTTTGTGCCACGGGTTTGTGCTACAGACATCTGAAAATA
AGTGGAGGTGGCCAAATAACCCCAACTGGTCGTCCATGATGTACAAGAGA
CATCGTGATGTCGTGCATAAGGATAGGTCGACATTCGCAGACGTAGACTA
CGATGTGTGGGAATTGAAAAAGTGA
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Coding sequence (CDS) from alignment at chr19:676455..676979+

>NO19G02360.1 ID=NO19G02360.1|Name=NO19G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr19:676455..676979+ (Nannochloropsis oceanica)
ATGCCGAACGAGGGTAAGGTGGATGCGTGGAGAAGGGATAACGAGAGGGC
CGTCGAGAAACTCACCCGTGGCGACCTTGCCATGTTCCCCTTGCTGGATA
CATTTCGTCGCATTTCCTGGCAGAAGGAGAACACCCATTGCCGTCTGAAT
GAATCGGTGTCGGACAAGCAGGTGGCGTATGTCCTTGCCAAGACGGAGTG
CTATGTGAGACGTTTGTGCCACGGGTTTGTGCTACAGACATCTGAAAATA
AGTGGAGGTGGCCAAATAACCCCAACTGGTCGTCCATGATGTACAAGAGA
CATCGTGATGTCGTGCATAAGGATAGGTCGACATTCGCAGACGTAGACTA
CGATGTGTGGGAATTGAAAAAGTGA
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Synonyms
Publications