NO19G02310.1, NO19G02310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02310.1
Unique Name	NO19G02310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1852
Alignment location	chr19:665126..668191 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:665126..668191 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G02310.1 vs.
Match: EWM28284.1 (xanthine uracil vitamin c permease [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 1.300e-119
Identity = 268/552 (48.55%), Postives = 364/552 (65.94%), Query Frame = 0

Query:   63 DYFCIEERGSSIGREIRAGVVTFLTMSYILLVNPQILSQVGYNPDQVVVATALSSGVASMIAGVCGNLPFGLAPGTGLSVYLAYGLVMAGVMSKEEGMAACLFSGVLMGVFTLLGVANAVQRLTPLSIKLATVVGMGLLIALIGMVSIHLVVPDTQTVVALGDLHDPKIWLSLGGLALTGSLLFHQIPGSILIGIIVVTAVVWGTEGGAPTTLVTLPSFDLSIATSLDF-TNAFSVSMVSAVLAFIFVGIFDISGVMFGMGRLARLTQPDETIPGSVWAFLASSVGSIVGALTGSTPVIVQVETAAGINEGGRTGLTAVTIGSLFFCSVFLAPLFGTVPQTATAPILILVGAMMMGESKKIDWSNMKEAVPAYFTTVMMPFSYSITNGILFGIIMSFAFYFTTGDTPLSRFCGKIGDSQQQQQQQKEGGKEGAKEGGKEEGWQVIGG------GFPSPGGGGGSGGGGGGGLLSPYTRH----------MERRPSLILPKDAVDELDRQEEAEQAALMGSYPPLATVADTFPPPPASRGGGGEREGGRGGGG 598
            ++F I++R SS+  EIRAG+ TFLTMSYILLVNPQIL+Q+GY    VV+ATA+ +G+AS++ G+ GNLPFGLAPGTGLS YL+YGLV+AGV+S+ + M AC  SG  + +  L  ++  + R+ P ++KLATVVGMGLLIALIGMVSI LVVP+  T+V LGDL D  IWL+L GL +TGS+LFHQI G +L  I+++T +VW  +   P+ ++++P        ++D   ++ S+ M+  VLAF+FVGIFDISGVMFG+  LA + + D  IPGS+WAFL  ++G++V A+ G +P+I+ VE+AAGI EGG+TGLTAV +G LF  S+F APLFG VP  ATAPILILVGAMM+GES+ IDW++M +A+PA+ T++MMPF++SI NGILFG+ MS  F+ TTG+  +    G++          K GGKE  +E  +    Q I          P P G G  GG G G  L     H          + RR SLIL K+  DE   ++    ++L G+     +V   F   PA+     ER+G  G  G
Sbjct:   14 EFFEIDKRQSSVATEIRAGITTFLTMSYILLVNPQILAQIGYPKSDVVIATAVGAGLASLVCGIFGNLPFGLAPGTGLSAYLSYGLVLAGVLSRPQAMTACFLSGAALALCALAQLSTVIMRVIPRAVKLATVVGMGLLIALIGMVSIGLVVPNEDTLVTLGDLSDYHIWLALFGLIVTGSMLFHQIKGGVLASIVLITLIVWCVDQDGPSRVLSVPHLQYGATRNIDVRPSSLSLDMLPPVLAFLFVGIFDISGVMFGLSSLAGIMEEDGHIPGSIWAFLGPALGTMVAAMAGCSPIIIHVESAAGIREGGKTGLTAVVVGLLFLLSLFFAPLFGKVPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPNGILFGVGMSATFFLTTGEF-MDYLPGRL-------LGMKRGGKE-EEEAKESRRLQTIDERSRLRLSPPVPSGKGPKGGSGSG--LDHSAHHQPHMLFDEQPLTRRFSLILSKEEADEHSARDRELSSSLTGASG--GSVRHAF--LPAAAASRCERDGSDGESG 550

The following BLAST results are available for this feature:

BLAST of NO19G02310.1 vs.

BLAST of NO19G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28284.1	1.300e-119	48.55	xanthine uracil vitamin c permease [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02310	NO19G02310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02310.1	NO19G02310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02310.1.cds1	NO19G02310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds2	NO19G02310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds3	NO19G02310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds4	NO19G02310.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds5	NO19G02310.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds6	NO19G02310.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds7	NO19G02310.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds8	NO19G02310.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02310.1.cds9	NO19G02310.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:665126..668191-
coding sequence from alignment at chr19:665126..668191-

mRNA sequence

>NO19G02310.1 ID=NO19G02310.1|Name=NO19G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
TACAGTGCCATGAATGGCGCCGCCGTCGCGGGCAACGGGCATGGACTATT
CCATCAACAACAACAACAACAACAACAGCGGCACCACCACCACCACCACG
CGGACTTTGACGACGACAGCATCAGTATCACGAGCAGCAACCACTACATG
AACACCAACCGACGCAGAAGAAAAAGTGCCAAGCAACATGTGCTTGATTA
CTTTTGCATTGAGGAACGAGGGTCAAGCATCGGACGCGAGATCCGTGCAG
GCGTCGTGACGTTCCTCACCATGTCCTACATCCTGCTTGTCAACCCTCAG
ATCCTTTCACAAGTGGGCTACAACCCCGATCAGGTCGTTGTCGCCACAGC
CCTGTCTTCGGGCGTCGCTAGCATGATCGCAGGGGTCTGCGGGAACCTGC
CTTTTGGGCTTGCCCCAGGAACGGGGCTGAGTGTCTACCTTGCGTACGGC
CTGGTCATGGCGGGGGTGATGAGCAAGGAGGAAGGAATGGCGGCCTGTTT
GTTTTCAGGCGTCTTGATGGGTGTCTTCACCCTCTTGGGGGTCGCCAATG
CAGTACAGCGTCTGACCCCCCTCTCAATCAAGCTCGCTACCGTGGTAGGG
ATGGGGCTGCTCATCGCCTTAATCGGCATGGTCTCCATCCACCTCGTCGT
ACCGGACACGCAGACAGTCGTAGCCCTTGGCGATCTCCACGACCCCAAAA
TATGGCTGAGCTTGGGAGGCCTGGCTTTGACCGGCAGCCTGCTCTTCCAT
CAAATACCTGGATCTATCCTCATCGGCATCATCGTCGTTACGGCCGTTGT
CTGGGGCACGGAGGGAGGCGCACCCACCACACTCGTCACCCTTCCCTCCT
TCGATCTCTCTATCGCCACCTCTCTTGATTTTACGAATGCTTTCTCCGTG
TCCATGGTGTCGGCAGTGCTCGCCTTCATATTCGTGGGCATCTTTGACAT
CAGCGGCGTCATGTTCGGCATGGGTCGCCTGGCCCGCCTAACCCAGCCCG
ACGAGACCATACCCGGAAGTGTATGGGCTTTCCTGGCCTCCTCCGTCGGC
TCCATCGTCGGTGCACTGACAGGCTCCACCCCCGTCATCGTTCAGGTCGA
GACAGCCGCCGGCATCAACGAGGGAGGAAGGACGGGCCTCACTGCCGTCA
CCATTGGCAGCCTTTTTTTCTGCTCGGTGTTTCTCGCGCCCTTATTTGGC
ACCGTCCCCCAGACCGCCACGGCTCCCATCCTCATCCTGGTGGGAGCCAT
GATGATGGGCGAGAGCAAGAAGATCGATTGGAGCAACATGAAAGAGGCCG
TTCCCGCCTACTTCACCACCGTCATGATGCCCTTCAGCTACAGTATCACC
AACGGCATCCTCTTCGGGATTATCATGTCCTTCGCCTTCTACTTCACCAC
TGGAGACACTCCCCTATCGCGGTTCTGCGGGAAAATCGGCGATTCACAGC
AGCAGCAGCAACAGCAGAAGGAGGGCGGGAAGGAGGGCGCGAAGGAGGGC
GGGAAGGAGGAAGGGTGGCAAGTTATTGGAGGAGGTTTCCCAAGCCCGGG
AGGAGGGGGAGGATCAGGAGGAGGAGGAGGGGGAGGTCTCTTATCTCCTT
ATACACGACATATGGAGCGTCGGCCAAGCCTGATCTTGCCAAAGGACGCC
GTGGACGAGCTGGACCGGCAAGAGGAGGCGGAGCAAGCAGCCCTGATGGG
AAGCTACCCTCCTCTTGCCACCGTGGCGGATACCTTCCCTCCTCCTCCTG
CTTCACGAGGAGGAGGAGGCGAGCGGGAAGGAGGGCGGGGGGGAGGAGGA
GGGTCGTATGGAGGGATGGAGGGTTATGGGGCGGTGGCAACTTCGTTGTA
GC

protein sequence of NO19G02310.1

>NO19G02310.1-protein ID=NO19G02310.1-protein|Name=NO19G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MNGAAVAGNGHGLFHQQQQQQQQRHHHHHHADFDDDSISITSSNHYMNTN
RRRRKSAKQHVLDYFCIEERGSSIGREIRAGVVTFLTMSYILLVNPQILS
QVGYNPDQVVVATALSSGVASMIAGVCGNLPFGLAPGTGLSVYLAYGLVM
AGVMSKEEGMAACLFSGVLMGVFTLLGVANAVQRLTPLSIKLATVVGMGL
LIALIGMVSIHLVVPDTQTVVALGDLHDPKIWLSLGGLALTGSLLFHQIP
GSILIGIIVVTAVVWGTEGGAPTTLVTLPSFDLSIATSLDFTNAFSVSMV
SAVLAFIFVGIFDISGVMFGMGRLARLTQPDETIPGSVWAFLASSVGSIV
GALTGSTPVIVQVETAAGINEGGRTGLTAVTIGSLFFCSVFLAPLFGTVP
QTATAPILILVGAMMMGESKKIDWSNMKEAVPAYFTTVMMPFSYSITNGI
LFGIIMSFAFYFTTGDTPLSRFCGKIGDSQQQQQQQKEGGKEGAKEGGKE
EGWQVIGGGFPSPGGGGGSGGGGGGGLLSPYTRHMERRPSLILPKDAVDE
LDRQEEAEQAALMGSYPPLATVADTFPPPPASRGGGGEREGGRGGGGGSY
GGMEGYGAVATSL*

mRNA from alignment at chr19:665126..668191-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02310.1 ID=NO19G02310.1|Name=NO19G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3066bp|location=Sequence derived from alignment at chr19:665126..668191- (Nannochloropsis oceanica)
TACAGTGCCATGAATGGCGCCGCCGTCGCGGGCAACGGGCATGGACTATT
CCATCAACAACAACAACAACAACAACAGCGGCACCACCACCACCACCACG
CGGACTTTGACGACGACAGCATCAGTATCACGAGCAGCAACCACTACATG
AACACCAACCGACGCAGAAGAAAAAGTGCCAAGCAACATGTGCTTGATTA
CTTTTGCATTGAGGAACGAGGGTCAAGCATCGGACGCGAGATCCGTGCAG
GCGTCGTGACGTTCCTCACCATGTCCTACATCCTGCTTGTCAACCCTCAG
ATCCTTTCACAAGTGGGCTACAACCCCGATCAGGTAGGGAGGAAGGATGG
AAGGAAGGAAGGGAGGGAGGGTGTAAGTTTTTTTCCCAGCCTGGCCTCGA
AATCTGCCGCAAGTCCTCATTCCCCCTGCTTTTCACCTTCAATTATTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCCCTCCACCAGGTCGTTGTCGCCAC
AGCCCTGTCTTCGGGCGTCGCTAGCATGATCGCAGGGGTCTGCGGGAACC
TGCCTTTTGGGCTTGCCCCAGGAACGGGGCTGAGTGTCTACCTTGCGTAC
GGCCTGGTCATGGCGGGGGTGATGAGCAAGGAGGAAGGAATGGCGGCCTG
TTTGTTTTCAGGCGTCTTGATGGGTGAGGAGGGAGGGAGAGAGGGAGTGA
GGAACGGAGGGAGGGCGGGAGGGGCCATGCAGCGTCGCCGCGCCCTCTAA
GCTCACGTTCCCCCCCTTCCTCCCTCCCTCCTTCCCTCCTTCCTCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGTGTCTTCACCCTCTTGGG
GGTCGCCAATGCAGTACAGCGTCTGACCCCCCTCTCAATCAAGCTCGCTA
CCGTGGTAGGGATGGGGCTGCTCATCGCCTTAATCGGCATGGTCTCCATC
CACCTCGTCGTACCGGACACGCAGACAGTCGTAGCCCTTGGTCCGTCCTC
CCCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTTACCTTGACTCG
CATGCCACGCCCCCCCTTCTCTGTCTTCCCTCGATACCTCCTCCGGGTAT
AATTTATGAGGCTGAGAACAGGTGCTGCCTCAGTCTCACGCGTCTCCCTT
TCTCCCCCGCTCACCCCTTGACCCTCCCTCCCTCACTCCCTCCCTCACTC
CCTCCCTCCCCCTCTCTTCTCAAGGCGATCTCCACGACCCCAAAATATGG
CTGAGCTTGGGAGGCCTGGCTTTGACCGGCAGCCTGCTCTTCCATCAAAT
ACCTGGATCTATCCTCATCGGCATCATCGTCGTTACGGCCGTTGTCTGGG
GCACGGAGGGAGGCGCACCCACCACACTCGTCACCCTTCCCTCCTTCGAT
CTCTCTATCGCCACCTCTCTTGATTTTACGAATGCTTTCTCCGTGTCCAT
GGTGTCGGCAGTGCTCGTAAGTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTGATTCCTCACTCGAGGGAGATGATGAAATTTACTCC
ATTCTTCCCCCCCTCTCTCCCCCCCTCCCTCCCTCCCTCCCTCAGGCCTT
CATATTCGTGGGCATCTTTGACATCAGCGGCGTCATGTTCGGCATGGGTC
GCCTGGCCCGCCTAACCCAGCCCGACGAGACCATACCCGGAAGTGTATGG
GCTTTCCTGGCCTCCTCCGTCGGCTCCATCGTCGGTGCACTGACAGGTGA
GCTCTCCCTTCCTTCCTTATCCCGGCTCCCCCGACAAGATTATTCCTGAC
CTCCCTCCACCCCTCCTTCCACCCCCCTTCCCCTCCTGCCCTTTCGAGGC
TCCACCCCCGTCATCGTTCAGGTCGAGACAGCCGCCGGCATCAACGAGGG
AGGAAGGACGGGCCTCACTGCCGTCACCATTGGCAGCCTTTTTTTCTGCT
CGGTGTTTCTCGCGCCCTTATTTGGCACCGGTCAGGACCTCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCGCTCCCTCGAGGGGCGATGCTAATCCCCC
TCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCATCCCACCCTCTCTC
AGTCCCCCAGACCGCCACGGCTCCCATCCTCATCCTGGTGGGAGCCATGA
TGATGGGCGAGAGCAAGAAGATCGATTGGAGCAACATGAAAGAGGCCGTT
CCCGCCTACTTCACCACCGTCATGATGCCCTTCAGCTACAGGTGAACGAG
CCCTCCCTCCCTCCCCCCCTCCCTCCCTAGTATATCACCAACGGCATCCT
CTTCGGGAGTATCATGTCCTTCGCCTTCTATTTCACCACAGCACCATGTC
ACATTGGTCCCTCCCTCCCTACCCCTCTCCCTAGTATCACCAACGGCATC
CTCTTCGGGATTATCATGTCCTTCGCCTTCTACTTCACCACTGGAGACAC
TCCCCTATCGCGGTTCTGCGGGAAAATCGGCGATTCACAGCAGCAGCAGC
AACAGCAGAAGGAGGGCGGGAAGGAGGGCGCGAAGGAGGGCGGGAAGGAG
GAAGGGTGGCAAGTTATTGGAGGAGGTTTCCCAAGCCCGGGAGGAGGGGG
AGGATCAGGAGGAGGAGGAGGGGGAGGTCTCTTATCTCCTTATACACGAC
ATATGGAGCGTCGGCCAAGCCTGATCTTGCCAAAGGTGTGTGCTGATGTC
TCCCTCCCTCCATTCCTCTTTCTCTCTCCTCATTATGCGTCCGTTCCCAT
CCCTGCTTTCTCCATCCCTGCTTCGTCATCACATTTATCTCCTATTTGTT
TACCCTGCACTCCCCACCACCTCCCTCTCTCCCTCCCTCCCTCCCTTCCT
CCCTGCAGGACGCCGTGGACGAGCTGGACCGGCAAGAGGAGGCGGAGCAA
GCAGCCCTGATGGGAAGCTACCCTCCTCTTGCCACCGTGGCGGATACCTT
CCCTCCTCCTCCTGCTTCACGAGGAGGAGGAGGCGAGCGGGAAGGAGGGC
GGGGGGGAGGAGGAGGGTCGTATGGAGGGATGGAGGGTTATGGGGCGGTG
GCAACTTCGTTGTAGC

Coding sequence (CDS) from alignment at chr19:665126..668191-

>NO19G02310.1 ID=NO19G02310.1|Name=NO19G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr19:665126..668191- (Nannochloropsis oceanica)
ATGAATGGCGCCGCCGTCGCGGGCAACGGGCATGGACTATTCCATCAACA
ACAACAACAACAACAACAGCGGCACCACCACCACCACCACGCGGACTTTG
ACGACGACAGCATCAGTATCACGAGCAGCAACCACTACATGAACACCAAC
CGACGCAGAAGAAAAAGTGCCAAGCAACATGTGCTTGATTACTTTTGCAT
TGAGGAACGAGGGTCAAGCATCGGACGCGAGATCCGTGCAGGCGTCGTGA
CGTTCCTCACCATGTCCTACATCCTGCTTGTCAACCCTCAGATCCTTTCA
CAAGTGGGCTACAACCCCGATCAGGTCGTTGTCGCCACAGCCCTGTCTTC
GGGCGTCGCTAGCATGATCGCAGGGGTCTGCGGGAACCTGCCTTTTGGGC
TTGCCCCAGGAACGGGGCTGAGTGTCTACCTTGCGTACGGCCTGGTCATG
GCGGGGGTGATGAGCAAGGAGGAAGGAATGGCGGCCTGTTTGTTTTCAGG
CGTCTTGATGGGTGTCTTCACCCTCTTGGGGGTCGCCAATGCAGTACAGC
GTCTGACCCCCCTCTCAATCAAGCTCGCTACCGTGGTAGGGATGGGGCTG
CTCATCGCCTTAATCGGCATGGTCTCCATCCACCTCGTCGTACCGGACAC
GCAGACAGTCGTAGCCCTTGGCGATCTCCACGACCCCAAAATATGGCTGA
GCTTGGGAGGCCTGGCTTTGACCGGCAGCCTGCTCTTCCATCAAATACCT
GGATCTATCCTCATCGGCATCATCGTCGTTACGGCCGTTGTCTGGGGCAC
GGAGGGAGGCGCACCCACCACACTCGTCACCCTTCCCTCCTTCGATCTCT
CTATCGCCACCTCTCTTGATTTTACGAATGCTTTCTCCGTGTCCATGGTG
TCGGCAGTGCTCGCCTTCATATTCGTGGGCATCTTTGACATCAGCGGCGT
CATGTTCGGCATGGGTCGCCTGGCCCGCCTAACCCAGCCCGACGAGACCA
TACCCGGAAGTGTATGGGCTTTCCTGGCCTCCTCCGTCGGCTCCATCGTC
GGTGCACTGACAGGCTCCACCCCCGTCATCGTTCAGGTCGAGACAGCCGC
CGGCATCAACGAGGGAGGAAGGACGGGCCTCACTGCCGTCACCATTGGCA
GCCTTTTTTTCTGCTCGGTGTTTCTCGCGCCCTTATTTGGCACCGTCCCC
CAGACCGCCACGGCTCCCATCCTCATCCTGGTGGGAGCCATGATGATGGG
CGAGAGCAAGAAGATCGATTGGAGCAACATGAAAGAGGCCGTTCCCGCCT
ACTTCACCACCGTCATGATGCCCTTCAGCTACAGTATCACCAACGGCATC
CTCTTCGGGATTATCATGTCCTTCGCCTTCTACTTCACCACTGGAGACAC
TCCCCTATCGCGGTTCTGCGGGAAAATCGGCGATTCACAGCAGCAGCAGC
AACAGCAGAAGGAGGGCGGGAAGGAGGGCGCGAAGGAGGGCGGGAAGGAG
GAAGGGTGGCAAGTTATTGGAGGAGGTTTCCCAAGCCCGGGAGGAGGGGG
AGGATCAGGAGGAGGAGGAGGGGGAGGTCTCTTATCTCCTTATACACGAC
ATATGGAGCGTCGGCCAAGCCTGATCTTGCCAAAGGACGCCGTGGACGAG
CTGGACCGGCAAGAGGAGGCGGAGCAAGCAGCCCTGATGGGAAGCTACCC
TCCTCTTGCCACCGTGGCGGATACCTTCCCTCCTCCTCCTGCTTCACGAG
GAGGAGGAGGCGAGCGGGAAGGAGGGCGGGGGGGAGGAGGAGGGTCGTAT
GGAGGGATGGAGGGTTATGGGGCGGTGGCAACTTCGTTGTAG

Synonyms

Publications