NO19G02190.1, NO19G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02190.1
Unique NameNO19G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2405
Alignment locationchr19:626326..628730 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:626326..628730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02190.1 vs.
Match: EWM23715.1 (hypothetical protein Naga_100366g2 [Nannochloropsis gaditana])

HSP 1 Score: 730.7 bits (1885), Expect = 3.700e-207
Identity = 398/569 (69.95%), Postives = 448/569 (78.73%), Query Frame = 0 
Query:   62 RRARIRRDLAPLSFPFWPVILLPCLLPCL--LLHVTSA-----MSPSSSPSLPPSGFLVPVLPFPSSSPTYSSRHPTHPPSMTHATKPSSSS--SSSSSSSPSPESSPSTSATTNSKKNSSGKNSSDHSLLDLVGFRAGLDESYRLKRQSALLTLSG----QEEGDKEAGVGVREGGL---GGDRKPWGYWKDISQIKTSVEEFWEGLNISSSAIPNEMLLRLYDAHGLRHAIYKQGGRETLAYLLGTDYIPGDFRQAMSFPEVQALVDAGVIVPHGDPQSQALLS----PPPSLQHQRIERRLVIGPRGGAVILNERLKTTRFPPSHGKHDKDGVPGGWKYQNRTVWSMEKLADECYLVAEEHSAALHLPLLFFPKISDLVGWGRANMINTIRRYGGYESVVCSLGFIPFSQWSYFCRFYLLMKDLKTYLDEEEGGRREMPTLRDIKRAGYHRLHSEVARNGGRKLVAARLGLPLKAGSGERGKFASRISYGTFDFDFGVALLEYIMNKCWAQHPRERAGRKEREKVNLFLPTAEELVGDERRDLLEKIIRYGGFENVARRLQLGFKS 611
            RR +IRR      +P  P ++   LL  L  LLH+  A     +SP +  S  P    +PVL       ++S+           A K SSSS  SS++ SSPS  S    SAT+ + K +   N++D SLLDLVGFRAGLD+SYRLKRQSAL  LSG    +E G K    G RE  +   GG+RKPWGYWKDISQIK SVEEFW  LN++SSAIPNEMLLRLYDAHGLRHAIYKQGGRETLAYLL TDYIPGDFR AM FPEVQALV+AGVIVP   P+++ LL     PP +  +   ERRLVIGPRGGAVILNERLK  RFPPS+GK D  G PGGWKYQNRTVWS+EKLA+ECY +AEEHSA+LH+PLLFFPK+SDLVGWGRANMINTIRRYGGYE+V+ SLGFIPFSQW+YFCRFYLLMKDLKTYLDEEEGG R+MPTLRD+KRAGYHRL+SEVARNGGRKLVAARLGLPLKAGSGE+GKFA+ ISYG FDFDFGVALLEYIMNKCWAQHPRERA R+E+E+VNLFLPTAEELV DER+DLLEKI+RYGGFENVARRLQLGFKS
Sbjct:   68 RRNKIRR-----GYPQRPSLVACTLLHALNLLLHLHQAHGAITLSPQAPLSFIPIHHFIPVLQIHGIPASFSAG------IQCRAMKSSSSSPPSSAAPSSPSSSSPVPASATSKALKKNRTLNATDTSLLDLVGFRAGLDKSYRLKRQSALQALSGDASRKEGGRKGRRRGERENEVTQEGGERKPWGYWKDISQIKVSVEEFWTRLNVTSSAIPNEMLLRLYDAHGLRHAIYKQGGRETLAYLLETDYIPGDFRVAMKFPEVQALVEAGVIVPPASPENKVLLDSPSLPPSAHAYPLQERRLVIGPRGGAVILNERLKNVRFPPSYGKPDGQGRPGGWKYQNRTVWSIEKLAEECYALAEEHSASLHVPLLFFPKLSDLVGWGRANMINTIRRYGGYEAVISSLGFIPFSQWNYFCRFYLLMKDLKTYLDEEEGGSRQMPTLRDVKRAGYHRLYSEVARNGGRKLVAARLGLPLKAGSGEKGKFATMISYGAFDFDFGVALLEYIMNKCWAQHPRERAARREKERVNLFLPTAEELVVDERQDLLEKIVRYGGFENVARRLQLGFKS 625
The following BLAST results are available for this feature:
BLAST of NO19G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23715.13.700e-20769.95hypothetical protein Naga_100366g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02190NO19G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02190.1NO19G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02190.1.cds1NO19G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02190.1 ID=NO19G02190.1|Name=NO19G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp
GCGGGTCCGTGTCCATCTCACGAAAAAGGAGCAAATTCATCTCAATCCAA
ACCCCGAGCCCTGCCCGAATGCATATGCAGCCATGCCGCATAGGGGAGGG
AAACAAACATCTCTCTTTTTGGGAAAAACATCATCCTTTTTCGTTGTCTA
CCTGCTCTATCATTTTCAAAAGCTCTGCGAGAAAATTACGAAAGTTATGT
ATGGCCCGAAGGCAGAATTGGAACTCTTCCTCGCTTTCTTCACTGAAATC
CTACCTGGCAAATTTAAGAAATGATGCTTGCGTCTTGCCCGCATCTACCC
AATGCCTAAGACAACCAAATTGCCCTGACTCTCATTACTGCAGAGTCTCA
TCGCTGCTATGATACCCTCATTCCTTGTTGTTGCACCACATACAGAGGGC
GGACAAAGTGACAAGCATAAGGCACCGCGGGCTCGGACAACGTCATCATC
ACGTAGTTTATTAGGTCCTGTCCCTCGTCCGCATTACTGCCGACCAACTC
TCTGCCCTTGAAGCCGGAGAAGTGAAAGGGACTAAGCATGAGATGGAGAA
GAAGATCCGGAGCTCCAGCGGCTGCAGGTGTCCATAATGAAGAGGAGGGC
ATAGGACACCTGTGTGCATGTCCTTTGCCGAGGAGCATGGTACTACCACC
TACGCCCCTACTTTCGACCAGGTCTCCTTCTCCTTCTTCATCGACAGACG
CATTTTCGCCCTCATTACCAAGAAGGGCTAGAATAAGAAGAGATCTCGCG
CCTCTTTCATTCCCATTTTGGCCCGTCATCCTTCTCCCTTGCCTACTCCC
TTGCCTCCTCCTCCATGTAACCTCGGCGATGTCACCATCATCATCGCCGT
CACTACCACCATCTGGCTTCCTCGTCCCTGTCCTCCCTTTTCCCTCATCC
TCTCCCACGTATAGTAGCCGTCATCCCACTCACCCACCCTCAATGACTCA
CGCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCAT
CCCCCGAGTCCTCCCCCTCCACCTCCGCCACCACCAATAGCAAGAAGAAT
TCCTCCGGGAAGAACAGCAGCGACCATTCCCTTCTAGATCTGGTCGGTTT
TCGAGCAGGCCTCGACGAGAGCTATCGTTTGAAGCGACAATCCGCTCTTT
TAACCCTCTCAGGCCAGGAAGAGGGCGACAAGGAGGCAGGGGTCGGGGTC
CGGGAGGGAGGGTTGGGAGGGGACCGAAAGCCCTGGGGCTATTGGAAAGA
TATTTCCCAGATCAAGACGTCCGTGGAGGAGTTCTGGGAGGGGTTGAACA
TAAGCAGCTCGGCAATCCCGAACGAGATGTTGCTGCGGCTCTATGATGCC
CACGGACTCCGGCACGCCATCTACAAGCAGGGGGGAAGGGAGACCCTGGC
CTACCTCCTCGGCACTGACTATATTCCGGGGGACTTTCGACAAGCCATGA
GCTTCCCGGAGGTCCAGGCGCTAGTCGATGCCGGCGTCATTGTGCCCCAC
GGGGACCCGCAATCCCAAGCCCTTCTCTCCCCTCCTCCCTCCCTCCAACA
CCAACGGATCGAGCGCCGGCTCGTCATTGGCCCTCGCGGCGGTGCTGTCA
TTTTGAATGAGCGTCTCAAGACGACGCGTTTCCCCCCCTCCCATGGGAAG
CACGACAAGGACGGGGTCCCCGGGGGATGGAAGTACCAGAACCGGACCGT
CTGGAGCATGGAGAAACTCGCCGACGAGTGCTATCTAGTCGCAGAGGAGC
ACTCCGCAGCCCTTCACCTCCCCCTGCTCTTCTTTCCCAAGATTAGTGAC
CTGGTTGGGTGGGGCCGCGCGAACATGATCAATACCATCCGGCGGTACGG
CGGGTACGAGAGCGTGGTGTGCTCCCTGGGATTCATCCCCTTCTCGCAGT
GGAGCTACTTCTGTCGGTTTTATTTGTTGATGAAGGACCTCAAGACATAC
CTGGATGAAGAGGAGGGAGGGCGGCGGGAGATGCCCACGTTGAGGGACAT
CAAGCGGGCGGGCTACCACCGCCTGCACTCAGAGGTGGCGAGGAACGGAG
GGAGGAAGCTCGTGGCGGCCCGGCTGGGGCTGCCCTTGAAGGCAGGGAGT
GGGGAGAGAGGCAAGTTCGCGTCGAGGATTAGCTACGGGACTTTTGACTT
TGACTTTGGCGTGGCGCTCTTGGAGTACATTATGAACAAATGCTGGGCGC
AGCACCCACGGGAGCGCGCGGGGAGGAAAGAGCGGGAGAAGGTAAACTTG
TTTTTACCGACGGCGGAGGAGCTGGTTGGGGACGAGCGGAGAGATTTGCT
GGAGAAGATAATTCGGTATGGCGGTTTCGAGAACGTGGCGCGACGGTTGC
AGTTGGGCTTTAAGAGCTAGTGGAGGAGAGGAGGGAGGGAGGGAAGGAGG
GAGGG
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protein sequence of NO19G02190.1

>NO19G02190.1-protein ID=NO19G02190.1-protein|Name=NO19G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MRWRRRSGAPAAAGVHNEEEGIGHLCACPLPRSMVLPPTPLLSTRSPSPS
SSTDAFSPSLPRRARIRRDLAPLSFPFWPVILLPCLLPCLLLHVTSAMSP
SSSPSLPPSGFLVPVLPFPSSSPTYSSRHPTHPPSMTHATKPSSSSSSSS
SSSPSPESSPSTSATTNSKKNSSGKNSSDHSLLDLVGFRAGLDESYRLKR
QSALLTLSGQEEGDKEAGVGVREGGLGGDRKPWGYWKDISQIKTSVEEFW
EGLNISSSAIPNEMLLRLYDAHGLRHAIYKQGGRETLAYLLGTDYIPGDF
RQAMSFPEVQALVDAGVIVPHGDPQSQALLSPPPSLQHQRIERRLVIGPR
GGAVILNERLKTTRFPPSHGKHDKDGVPGGWKYQNRTVWSMEKLADECYL
VAEEHSAALHLPLLFFPKISDLVGWGRANMINTIRRYGGYESVVCSLGFI
PFSQWSYFCRFYLLMKDLKTYLDEEEGGRREMPTLRDIKRAGYHRLHSEV
ARNGGRKLVAARLGLPLKAGSGERGKFASRISYGTFDFDFGVALLEYIMN
KCWAQHPRERAGRKEREKVNLFLPTAEELVGDERRDLLEKIIRYGGFENV
ARRLQLGFKS*
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mRNA from alignment at chr19:626326..628730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02190.1 ID=NO19G02190.1|Name=NO19G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp|location=Sequence derived from alignment at chr19:626326..628730+ (Nannochloropsis oceanica)
GCGGGTCCGTGTCCATCTCACGAAAAAGGAGCAAATTCATCTCAATCCAA
ACCCCGAGCCCTGCCCGAATGCATATGCAGCCATGCCGCATAGGGGAGGG
AAACAAACATCTCTCTTTTTGGGAAAAACATCATCCTTTTTCGTTGTCTA
CCTGCTCTATCATTTTCAAAAGCTCTGCGAGAAAATTACGAAAGTTATGT
ATGGCCCGAAGGCAGAATTGGAACTCTTCCTCGCTTTCTTCACTGAAATC
CTACCTGGCAAATTTAAGAAATGATGCTTGCGTCTTGCCCGCATCTACCC
AATGCCTAAGACAACCAAATTGCCCTGACTCTCATTACTGCAGAGTCTCA
TCGCTGCTATGATACCCTCATTCCTTGTTGTTGCACCACATACAGAGGGC
GGACAAAGTGACAAGCATAAGGCACCGCGGGCTCGGACAACGTCATCATC
ACGTAGTTTATTAGGTCCTGTCCCTCGTCCGCATTACTGCCGACCAACTC
TCTGCCCTTGAAGCCGGAGAAGTGAAAGGGACTAAGCATGAGATGGAGAA
GAAGATCCGGAGCTCCAGCGGCTGCAGGTGTCCATAATGAAGAGGAGGGC
ATAGGACACCTGTGTGCATGTCCTTTGCCGAGGAGCATGGTACTACCACC
TACGCCCCTACTTTCGACCAGGTCTCCTTCTCCTTCTTCATCGACAGACG
CATTTTCGCCCTCATTACCAAGAAGGGCTAGAATAAGAAGAGATCTCGCG
CCTCTTTCATTCCCATTTTGGCCCGTCATCCTTCTCCCTTGCCTACTCCC
TTGCCTCCTCCTCCATGTAACCTCGGCGATGTCACCATCATCATCGCCGT
CACTACCACCATCTGGCTTCCTCGTCCCTGTCCTCCCTTTTCCCTCATCC
TCTCCCACGTATAGTAGCCGTCATCCCACTCACCCACCCTCAATGACTCA
CGCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCAT
CCCCCGAGTCCTCCCCCTCCACCTCCGCCACCACCAATAGCAAGAAGAAT
TCCTCCGGGAAGAACAGCAGCGACCATTCCCTTCTAGATCTGGTCGGTTT
TCGAGCAGGCCTCGACGAGAGCTATCGTTTGAAGCGACAATCCGCTCTTT
TAACCCTCTCAGGCCAGGAAGAGGGCGACAAGGAGGCAGGGGTCGGGGTC
CGGGAGGGAGGGTTGGGAGGGGACCGAAAGCCCTGGGGCTATTGGAAAGA
TATTTCCCAGATCAAGACGTCCGTGGAGGAGTTCTGGGAGGGGTTGAACA
TAAGCAGCTCGGCAATCCCGAACGAGATGTTGCTGCGGCTCTATGATGCC
CACGGACTCCGGCACGCCATCTACAAGCAGGGGGGAAGGGAGACCCTGGC
CTACCTCCTCGGCACTGACTATATTCCGGGGGACTTTCGACAAGCCATGA
GCTTCCCGGAGGTCCAGGCGCTAGTCGATGCCGGCGTCATTGTGCCCCAC
GGGGACCCGCAATCCCAAGCCCTTCTCTCCCCTCCTCCCTCCCTCCAACA
CCAACGGATCGAGCGCCGGCTCGTCATTGGCCCTCGCGGCGGTGCTGTCA
TTTTGAATGAGCGTCTCAAGACGACGCGTTTCCCCCCCTCCCATGGGAAG
CACGACAAGGACGGGGTCCCCGGGGGATGGAAGTACCAGAACCGGACCGT
CTGGAGCATGGAGAAACTCGCCGACGAGTGCTATCTAGTCGCAGAGGAGC
ACTCCGCAGCCCTTCACCTCCCCCTGCTCTTCTTTCCCAAGATTAGTGAC
CTGGTTGGGTGGGGCCGCGCGAACATGATCAATACCATCCGGCGGTACGG
CGGGTACGAGAGCGTGGTGTGCTCCCTGGGATTCATCCCCTTCTCGCAGT
GGAGCTACTTCTGTCGGTTTTATTTGTTGATGAAGGACCTCAAGACATAC
CTGGATGAAGAGGAGGGAGGGCGGCGGGAGATGCCCACGTTGAGGGACAT
CAAGCGGGCGGGCTACCACCGCCTGCACTCAGAGGTGGCGAGGAACGGAG
GGAGGAAGCTCGTGGCGGCCCGGCTGGGGCTGCCCTTGAAGGCAGGGAGT
GGGGAGAGAGGCAAGTTCGCGTCGAGGATTAGCTACGGGACTTTTGACTT
TGACTTTGGCGTGGCGCTCTTGGAGTACATTATGAACAAATGCTGGGCGC
AGCACCCACGGGAGCGCGCGGGGAGGAAAGAGCGGGAGAAGGTAAACTTG
TTTTTACCGACGGCGGAGGAGCTGGTTGGGGACGAGCGGAGAGATTTGCT
GGAGAAGATAATTCGGTATGGCGGTTTCGAGAACGTGGCGCGACGGTTGC
AGTTGGGCTTTAAGAGCTAGTGGAGGAGAGGAGGGAGGGAGGGAAGGAGG
GAGGG
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Coding sequence (CDS) from alignment at chr19:626326..628730+

>NO19G02190.1 ID=NO19G02190.1|Name=NO19G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at chr19:626326..628730+ (Nannochloropsis oceanica)
ATGAGATGGAGAAGAAGATCCGGAGCTCCAGCGGCTGCAGGTGTCCATAA
TGAAGAGGAGGGCATAGGACACCTGTGTGCATGTCCTTTGCCGAGGAGCA
TGGTACTACCACCTACGCCCCTACTTTCGACCAGGTCTCCTTCTCCTTCT
TCATCGACAGACGCATTTTCGCCCTCATTACCAAGAAGGGCTAGAATAAG
AAGAGATCTCGCGCCTCTTTCATTCCCATTTTGGCCCGTCATCCTTCTCC
CTTGCCTACTCCCTTGCCTCCTCCTCCATGTAACCTCGGCGATGTCACCA
TCATCATCGCCGTCACTACCACCATCTGGCTTCCTCGTCCCTGTCCTCCC
TTTTCCCTCATCCTCTCCCACGTATAGTAGCCGTCATCCCACTCACCCAC
CCTCAATGACTCACGCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCC
TCCTCCTCGCCATCCCCCGAGTCCTCCCCCTCCACCTCCGCCACCACCAA
TAGCAAGAAGAATTCCTCCGGGAAGAACAGCAGCGACCATTCCCTTCTAG
ATCTGGTCGGTTTTCGAGCAGGCCTCGACGAGAGCTATCGTTTGAAGCGA
CAATCCGCTCTTTTAACCCTCTCAGGCCAGGAAGAGGGCGACAAGGAGGC
AGGGGTCGGGGTCCGGGAGGGAGGGTTGGGAGGGGACCGAAAGCCCTGGG
GCTATTGGAAAGATATTTCCCAGATCAAGACGTCCGTGGAGGAGTTCTGG
GAGGGGTTGAACATAAGCAGCTCGGCAATCCCGAACGAGATGTTGCTGCG
GCTCTATGATGCCCACGGACTCCGGCACGCCATCTACAAGCAGGGGGGAA
GGGAGACCCTGGCCTACCTCCTCGGCACTGACTATATTCCGGGGGACTTT
CGACAAGCCATGAGCTTCCCGGAGGTCCAGGCGCTAGTCGATGCCGGCGT
CATTGTGCCCCACGGGGACCCGCAATCCCAAGCCCTTCTCTCCCCTCCTC
CCTCCCTCCAACACCAACGGATCGAGCGCCGGCTCGTCATTGGCCCTCGC
GGCGGTGCTGTCATTTTGAATGAGCGTCTCAAGACGACGCGTTTCCCCCC
CTCCCATGGGAAGCACGACAAGGACGGGGTCCCCGGGGGATGGAAGTACC
AGAACCGGACCGTCTGGAGCATGGAGAAACTCGCCGACGAGTGCTATCTA
GTCGCAGAGGAGCACTCCGCAGCCCTTCACCTCCCCCTGCTCTTCTTTCC
CAAGATTAGTGACCTGGTTGGGTGGGGCCGCGCGAACATGATCAATACCA
TCCGGCGGTACGGCGGGTACGAGAGCGTGGTGTGCTCCCTGGGATTCATC
CCCTTCTCGCAGTGGAGCTACTTCTGTCGGTTTTATTTGTTGATGAAGGA
CCTCAAGACATACCTGGATGAAGAGGAGGGAGGGCGGCGGGAGATGCCCA
CGTTGAGGGACATCAAGCGGGCGGGCTACCACCGCCTGCACTCAGAGGTG
GCGAGGAACGGAGGGAGGAAGCTCGTGGCGGCCCGGCTGGGGCTGCCCTT
GAAGGCAGGGAGTGGGGAGAGAGGCAAGTTCGCGTCGAGGATTAGCTACG
GGACTTTTGACTTTGACTTTGGCGTGGCGCTCTTGGAGTACATTATGAAC
AAATGCTGGGCGCAGCACCCACGGGAGCGCGCGGGGAGGAAAGAGCGGGA
GAAGGTAAACTTGTTTTTACCGACGGCGGAGGAGCTGGTTGGGGACGAGC
GGAGAGATTTGCTGGAGAAGATAATTCGGTATGGCGGTTTCGAGAACGTG
GCGCGACGGTTGCAGTTGGGCTTTAAGAGCTAG
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Synonyms
Publications