NO19G02110.1, NO19G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02110.1
Unique NameNO19G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1270
Alignment locationchr19:606583..608168 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:606583..608168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02110.1 vs.
Match: EWM23665.1 (derlin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 327.4 bits (838), Expect = 3.900e-86
Identity = 161/236 (68.22%), Postives = 187/236 (79.24%), Query Frame = 0 
Query:   16 SPEEWFKSLPPITRAYLIAAFFSTIFSHFGIVSPRKLIWDWEGLKNFQLWRLITPFTFFGGLGMPFVMQLFMLVQYSSRYEISPFNTGGGGGSSDYAMMLIFGAGALHILNLYMGKMVLGSCLVMMITYVWSCREPHSMVSFWGFTLEAMYLPWALTALQFLMNGQQGLSDPLMGIAVGHVYFFLIDTLPVEYDWDVLKTPNFLVDAFEGPPVGPGGGGGGGGGAMAGGVRVGAGG 252
            +P+EWF++LPPIT+AYL+AAF STI SHFG+V  R L+WD  GLK FQLWRLITPFT+FG LGM FVMQLFMLVQYSSRYE+SPFNTGGGG S+DY +ML+FGA AL +LN Y+G  VLG  LV M+TY+WSCREPH++VSFWGFTL AMYLPWAL AL FLM G   +  PLMGI VGH+Y+FLI+TLP+EYD D+LKTP F V+AFEGP    GG G   G   AG    G GG
Sbjct:   68 TPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGG 303
The following BLAST results are available for this feature:
BLAST of NO19G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23665.13.900e-8668.22derlin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02110NO19G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02110.1NO19G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02110.1.cds1NO19G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02110.1.cds2NO19G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02110.1.cds3NO19G02110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02110.1 ID=NO19G02110.1|Name=NO19G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
AAGTAAAGCTCTAATAGTGAGAGGAAGCACTAACACCGCACCAAACTAGA
ACCTGGACATCGTAGACCCCAGGCTGTTCTTATGCTAGCAGGACACAAGA
CAGACGCCCCAGGAGGATCCAAAAAAAGGCTTAGAATGGGTTTTGGCGAG
TGTTCTGCATAATGAGGTTGTACGGGGAACCTTCCAGCTCACGTGCAATT
TGTTTGGGATGTGGATTCGCTAGAGTGAGGGAGGCGAGAGGAAGACAGGG
CTCATCTGGCCTGGTCTGGTTGTTTTTTATACAATATTTTCCTCTCCCCG
TCAGACCATCCCTTCCGCAGCACAGCACACAAGCACCACAGCGCACCACA
CCCAGGCGCAGGCACCAGGCCATGCTCCAAGCCCAAGGATCGTGCCCAGA
TGCTTGTCCTCCTATTAACCCCTTCGCATTTCACACGCAGTCTCATTCCG
TCCTCACCCGTCCCCATAACCCCAGGGCTTCGTCTTGAACCGACAGGCAG
CGCTGAGCAGCATGCGTCCCCCACGCCCCCAGATCCGACAAGTCGGTGGC
GGCAACTCTCCAGAGGAATGGTTCAAAAGCCTGCCGCCCATCACCAGGGC
TTACCTCATCGCCGCCTTCTTCTCCACCATTTTTTCCCACTTTGGCATTG
TTTCCCCAAGGAAATTGATTTGGGATTGGGAAGGGCTGAAGAACTTTCAG
CTCTGGCGCCTCATCACCCCCTTCACCTTTTTCGGTGGCCTGGGGATGCC
CTTCGTCATGCAGCTCTTCATGCTCGTTCAGTACTCGAGCCGGTACGAGA
TTTCCCCCTTCAACACCGGAGGGGGCGGGGGGTCGTCGGACTATGCGATG
ATGCTGATTTTCGGGGCCGGGGCCTTGCACATCTTGAACCTGTACATGGG
CAAGATGGTGTTGGGCTCGTGTTTGGTCATGATGATCACCTACGTTTGGT
CTTGCCGGGAGCCGCACTCGATGGTGTCATTCTGGGGGTTTACCTTGGAG
GCGATGTACCTGCCGTGGGCCCTGACCGCCCTCCAGTTTTTGATGAACGG
CCAGCAGGGGCTGAGCGACCCCCTGATGGGCATCGCTGTCGGTCATGTGT
ACTTCTTCTTGATCGACACCCTGCCCGTGGAGTACGACTGGGACGTGCTC
AAGACGCCCAACTTCCTGGTAGATGCATTCGAGGGGCCACCGGTCGGGCC
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGATGGCGGGGGGCGTGAGGG
TTGGGGCGGGGGGGGAGTAG
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protein sequence of NO19G02110.1

>NO19G02110.1-protein ID=NO19G02110.1-protein|Name=NO19G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MRPPRPQIRQVGGGNSPEEWFKSLPPITRAYLIAAFFSTIFSHFGIVSPR
KLIWDWEGLKNFQLWRLITPFTFFGGLGMPFVMQLFMLVQYSSRYEISPF
NTGGGGGSSDYAMMLIFGAGALHILNLYMGKMVLGSCLVMMITYVWSCRE
PHSMVSFWGFTLEAMYLPWALTALQFLMNGQQGLSDPLMGIAVGHVYFFL
IDTLPVEYDWDVLKTPNFLVDAFEGPPVGPGGGGGGGGGAMAGGVRVGAG
GE*
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mRNA from alignment at chr19:606583..608168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02110.1 ID=NO19G02110.1|Name=NO19G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr19:606583..608168+ (Nannochloropsis oceanica)
AAGTAAAGCTCTAATAGTGAGAGGAAGCACTAACACCGCACCAAACTAGA
ACCTGGACATCGTAGACCCCAGGCTGTTCTTATGCTAGCAGGACACAAGA
CAGACGCCCCAGGAGGATCCAAAAAAAGGCTTAGAATGGGTTTTGGCGAG
TGTTCTGCATAATGAGGTTGTACGGGGAACCTTCCAGCTCACGTGCAATT
TGTTTGGGATGTGGATTCGCTAGAGTGAGGGAGGCGAGAGGAAGACAGGG
CTCATCTGGCCTGGTCTGGTTGTTTTTTATACAATATTTTCCTCTCCCCG
TCAGACCATCCCTTCCGCAGCACAGCACACAAGCACCACAGCGCACCACA
CCCAGGCGCAGGCACCAGGCCATGCTCCAAGCCCAAGGATCGTGCCCAGA
TGCTTGTCCTCCTATTAACCCCTTCGCATTTCACACGCAGTCTCATTCCG
TCCTCACCCGTCCCCATAACCCCAGGGCTTCGTCTTGAACCGACAGGCAG
CGCTGAGCAGCATGCGTCCCCCACGCCCCCAGATCCGACAAGTCGGTGGC
GGCAACTCTCCAGGTACGTTTTTTGTGGTGCGTAGGGACTTAAGTTGGTC
CGCACATCATTGATACCGTTTCCCTTGACCCGCCTCGTCTCTTCTCCCGT
CCCTTCTCCTTTTCTCTCTCCCCAAATCAGAGGAATGGTTCAAAAGCCTG
CCGCCCATCACCAGGGCTTACCTCATCGCCGCCTTCTTCTCCACCATTTT
TTCCCACTTTGGCATTGTTTCCCCAAGGAAATTGATTTGGGATTGGGAAG
GGCTGAAGAACTTTCAGGTTGGAGGAGAGGCCGGACGGGAGGGGGGGATG
GAAGTTTGACGAGGGGTCGTGCGGGTGCGCGGCATGGGGTATTGCTAGGC
CAGCGAAGAAAGGGATGAGGTTCATTTTAGGGAGGAAATCACCGCTTGTA
TATTTACGCTTATGCAACGTTTCTCGGTCGTCCCCTTTTCCCTCTTCCTA
CCTCCTCCTCATACAGCTCTGGCGCCTCATCACCCCCTTCACCTTTTTCG
GTGGCCTGGGGATGCCCTTCGTCATGCAGCTCTTCATGCTCGTTCAGTAC
TCGAGCCGGTACGAGATTTCCCCCTTCAACACCGGAGGGGGCGGGGGGTC
GTCGGACTATGCGATGATGCTGATTTTCGGGGCCGGGGCCTTGCACATCT
TGAACCTGTACATGGGCAAGATGGTGTTGGGCTCGTGTTTGGTCATGATG
ATCACCTACGTTTGGTCTTGCCGGGAGCCGCACTCGATGGTGTCATTCTG
GGGGTTTACCTTGGAGGCGATGTACCTGCCGTGGGCCCTGACCGCCCTCC
AGTTTTTGATGAACGGCCAGCAGGGGCTGAGCGACCCCCTGATGGGCATC
GCTGTCGGTCATGTGTACTTCTTCTTGATCGACACCCTGCCCGTGGAGTA
CGACTGGGACGTGCTCAAGACGCCCAACTTCCTGGTAGATGCATTCGAGG
GGCCACCGGTCGGGCCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGATG
GCGGGGGGCGTGAGGGTTGGGGCGGGGGGGGAGTAG
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Coding sequence (CDS) from alignment at chr19:606583..608168+

>NO19G02110.1 ID=NO19G02110.1|Name=NO19G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr19:606583..608168+ (Nannochloropsis oceanica)
ATGCGTCCCCCACGCCCCCAGATCCGACAAGTCGGTGGCGGCAACTCTCC
AGAGGAATGGTTCAAAAGCCTGCCGCCCATCACCAGGGCTTACCTCATCG
CCGCCTTCTTCTCCACCATTTTTTCCCACTTTGGCATTGTTTCCCCAAGG
AAATTGATTTGGGATTGGGAAGGGCTGAAGAACTTTCAGCTCTGGCGCCT
CATCACCCCCTTCACCTTTTTCGGTGGCCTGGGGATGCCCTTCGTCATGC
AGCTCTTCATGCTCGTTCAGTACTCGAGCCGGTACGAGATTTCCCCCTTC
AACACCGGAGGGGGCGGGGGGTCGTCGGACTATGCGATGATGCTGATTTT
CGGGGCCGGGGCCTTGCACATCTTGAACCTGTACATGGGCAAGATGGTGT
TGGGCTCGTGTTTGGTCATGATGATCACCTACGTTTGGTCTTGCCGGGAG
CCGCACTCGATGGTGTCATTCTGGGGGTTTACCTTGGAGGCGATGTACCT
GCCGTGGGCCCTGACCGCCCTCCAGTTTTTGATGAACGGCCAGCAGGGGC
TGAGCGACCCCCTGATGGGCATCGCTGTCGGTCATGTGTACTTCTTCTTG
ATCGACACCCTGCCCGTGGAGTACGACTGGGACGTGCTCAAGACGCCCAA
CTTCCTGGTAGATGCATTCGAGGGGCCACCGGTCGGGCCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGCGATGGCGGGGGGCGTGAGGGTTGGGGCGGGG
GGGGAGTAG
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Synonyms
Publications