NO19G01980.1, NO19G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01980.1
Unique NameNO19G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr19:578035..579141 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:578035..579141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G01980.1 vs.
Match: XP_008867989.1 (hypothetical protein, variant [Aphanomyces invadans]; ETW03760.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 156.4 bits (394), Expect = 1.700e-34
Identity = 115/329 (34.95%), Postives = 167/329 (50.76%), Query Frame = 0 
Query:    4 SSKLREDDVLSIALLYECFGRPSEAPSKWATHIEMLPTGRLLNAINLSPTALEHLEGSALHILACRQQEQVISDFEELSASPLMVGDTYLSSCEW--------WSSKNYRWALAQIHSRFVSVATEPGEPPRKAMAPFFDLFNHSSATPSAISHSFVAGNRAVGSKNVAASADDENEGSLVVVARRSLVEGEEACLNYGPLGNLRLLQLYGFVLPDNHFDALDIWARMDPTAPEFSVK-----DRALARLALRSPFALTRQPPVLSPSLLAAIRIQCAKGSEMAC----LENALKGPLSAANERETLAALEMALTIMREALPVAREEKE 316
            S  LREDD L+  L+YE F  P    SKW  H+++LP     N +  +   +  L+GS ++ +A + ++QV+SDF EL  + L+     L   E         ++ +NY+WAL+ I SRFVSVA +  +   K+M P FD+FNH     + +SH F                 D    + V+ + +    G + C+NYG L N +LL LYGFVLP N FD +++WA M   AP ++ K        LA  A  +PF L   P  L+  LLA +RIQ     E++     + N    P+   NE++TL AL  AL  M EA P+  E+ E
Sbjct:   11 SLPLREDDCLAWFLIYERFVNPQ---SKWKRHLDVLPHS-FHNILYFTEDEINMLQGSNVYYVALQLKQQVVSDFAELQQT-LLPDTLRLLHAEHSADVLMAVFTLENYKWALSVIWSRFVSVALDAEDNLAKSMVPVFDMFNHDPH--AQMSHGF-----------------DPTTNAFVLRSHQHWTAGSQVCINYGALPNHKLLTLYGFVLPSNPFDVVELWAPMSDDAPYYNRKLALMTGHGLADHATAAPFEL--YPDSLNDELLAYLRIQRLDVGELSSDLIEVANFAFEPVHDDNEKDTLTALIYALQQMLEAFPITVEDDE 313
The following BLAST results are available for this feature:
BLAST of NO19G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008867989.11.700e-3434.95hypothetical protein, variant [Aphanomyces invadan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01980NO19G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01980.1NO19G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01980.1.cds1NO19G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01980.1 ID=NO19G01980.1|Name=NO19G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGTCTGATTCTTCAAAATTGCGGGAAGACGATGTACTTAGTATTGCCCT
GCTCTACGAGTGCTTTGGGCGTCCATCTGAGGCGCCTTCTAAATGGGCTA
CGCACATCGAGATGTTGCCCACTGGGCGGCTTCTTAATGCCATTAACTTG
TCGCCGACGGCCCTCGAACACTTAGAAGGGTCCGCCTTGCATATCCTCGC
TTGTCGTCAGCAAGAGCAAGTTATTTCTGACTTTGAAGAGTTGAGTGCCT
CGCCGCTGATGGTGGGGGACACATATTTGTCCAGTTGCGAATGGTGGAGC
TCGAAAAACTACCGTTGGGCATTGGCGCAGATCCACAGTCGATTTGTGAG
TGTCGCAACAGAGCCAGGGGAGCCTCCACGAAAGGCAATGGCCCCCTTTT
TTGACCTCTTCAATCATTCGTCCGCGACACCATCTGCAATCTCACACAGC
TTTGTTGCGGGAAATAGAGCCGTTGGCAGTAAAAATGTGGCTGCTAGCGC
CGATGACGAGAATGAAGGCTCCCTGGTGGTCGTGGCAAGGCGGTCTCTTG
TAGAAGGCGAGGAGGCGTGCTTAAATTACGGCCCCCTTGGAAATCTCCGA
CTGCTCCAGCTGTATGGGTTTGTCCTCCCTGACAATCATTTCGATGCCCT
TGATATATGGGCAAGGATGGACCCGACAGCACCTGAATTCTCGGTCAAAG
ATCGTGCACTCGCTCGCTTGGCTCTCCGGTCGCCTTTCGCCCTGACCAGG
CAGCCCCCCGTCCTCTCCCCCTCTCTCCTCGCGGCAATCCGCATTCAGTG
TGCTAAAGGGTCGGAGATGGCATGTCTGGAAAATGCTTTGAAGGGGCCAC
TAAGTGCGGCCAACGAGAGGGAGACACTGGCGGCCCTGGAAATGGCGCTG
ACTATCATGCGGGAGGCTTTGCCCGTGGCCAGGGAGGAGAAAGAGTGGGG
GGAGGAGGAGTTGCAAGAGAGGGGTGGAGAAGAGAACGTGGAAGCTCAGC
TTGTGCGCACATATTTGGAAAGCGAGCGCGCTCTCTTGACGCAGGGCCTC
GAAGCTGTGGCGGTACTGCAGAGGCAGAAGGCGTACTCTAGTGGGATGGA
ATATTGA
back to top

protein sequence of NO19G01980.1

>NO19G01980.1-protein ID=NO19G01980.1-protein|Name=NO19G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSDSSKLREDDVLSIALLYECFGRPSEAPSKWATHIEMLPTGRLLNAINL
SPTALEHLEGSALHILACRQQEQVISDFEELSASPLMVGDTYLSSCEWWS
SKNYRWALAQIHSRFVSVATEPGEPPRKAMAPFFDLFNHSSATPSAISHS
FVAGNRAVGSKNVAASADDENEGSLVVVARRSLVEGEEACLNYGPLGNLR
LLQLYGFVLPDNHFDALDIWARMDPTAPEFSVKDRALARLALRSPFALTR
QPPVLSPSLLAAIRIQCAKGSEMACLENALKGPLSAANERETLAALEMAL
TIMREALPVAREEKEWGEEELQERGGEENVEAQLVRTYLESERALLTQGL
EAVAVLQRQKAYSSGMEY*
back to top

mRNA from alignment at chr19:578035..579141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01980.1 ID=NO19G01980.1|Name=NO19G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at chr19:578035..579141+ (Nannochloropsis oceanica)
ATGTCTGATTCTTCAAAATTGCGGGAAGACGATGTACTTAGTATTGCCCT
GCTCTACGAGTGCTTTGGGCGTCCATCTGAGGCGCCTTCTAAATGGGCTA
CGCACATCGAGATGTTGCCCACTGGGCGGCTTCTTAATGCCATTAACTTG
TCGCCGACGGCCCTCGAACACTTAGAAGGGTCCGCCTTGCATATCCTCGC
TTGTCGTCAGCAAGAGCAAGTTATTTCTGACTTTGAAGAGTTGAGTGCCT
CGCCGCTGATGGTGGGGGACACATATTTGTCCAGTTGCGAATGGTGGAGC
TCGAAAAACTACCGTTGGGCATTGGCGCAGATCCACAGTCGATTTGTGAG
TGTCGCAACAGAGCCAGGGGAGCCTCCACGAAAGGCAATGGCCCCCTTTT
TTGACCTCTTCAATCATTCGTCCGCGACACCATCTGCAATCTCACACAGC
TTTGTTGCGGGAAATAGAGCCGTTGGCAGTAAAAATGTGGCTGCTAGCGC
CGATGACGAGAATGAAGGCTCCCTGGTGGTCGTGGCAAGGCGGTCTCTTG
TAGAAGGCGAGGAGGCGTGCTTAAATTACGGCCCCCTTGGAAATCTCCGA
CTGCTCCAGCTGTATGGGTTTGTCCTCCCTGACAATCATTTCGATGCCCT
TGATATATGGGCAAGGATGGACCCGACAGCACCTGAATTCTCGGTCAAAG
ATCGTGCACTCGCTCGCTTGGCTCTCCGGTCGCCTTTCGCCCTGACCAGG
CAGCCCCCCGTCCTCTCCCCCTCTCTCCTCGCGGCAATCCGCATTCAGTG
TGCTAAAGGGTCGGAGATGGCATGTCTGGAAAATGCTTTGAAGGGGCCAC
TAAGTGCGGCCAACGAGAGGGAGACACTGGCGGCCCTGGAAATGGCGCTG
ACTATCATGCGGGAGGCTTTGCCCGTGGCCAGGGAGGAGAAAGAGTGGGG
GGAGGAGGAGTTGCAAGAGAGGGGTGGAGAAGAGAACGTGGAAGCTCAGC
TTGTGCGCACATATTTGGAAAGCGAGCGCGCTCTCTTGACGCAGGGCCTC
GAAGCTGTGGCGGTACTGCAGAGGCAGAAGGCGTACTCTAGTGGGATGGA
ATATTGA
back to top

Coding sequence (CDS) from alignment at chr19:578035..579141+

>NO19G01980.1 ID=NO19G01980.1|Name=NO19G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr19:578035..579141+ (Nannochloropsis oceanica)
ATGTCTGATTCTTCAAAATTGCGGGAAGACGATGTACTTAGTATTGCCCT
GCTCTACGAGTGCTTTGGGCGTCCATCTGAGGCGCCTTCTAAATGGGCTA
CGCACATCGAGATGTTGCCCACTGGGCGGCTTCTTAATGCCATTAACTTG
TCGCCGACGGCCCTCGAACACTTAGAAGGGTCCGCCTTGCATATCCTCGC
TTGTCGTCAGCAAGAGCAAGTTATTTCTGACTTTGAAGAGTTGAGTGCCT
CGCCGCTGATGGTGGGGGACACATATTTGTCCAGTTGCGAATGGTGGAGC
TCGAAAAACTACCGTTGGGCATTGGCGCAGATCCACAGTCGATTTGTGAG
TGTCGCAACAGAGCCAGGGGAGCCTCCACGAAAGGCAATGGCCCCCTTTT
TTGACCTCTTCAATCATTCGTCCGCGACACCATCTGCAATCTCACACAGC
TTTGTTGCGGGAAATAGAGCCGTTGGCAGTAAAAATGTGGCTGCTAGCGC
CGATGACGAGAATGAAGGCTCCCTGGTGGTCGTGGCAAGGCGGTCTCTTG
TAGAAGGCGAGGAGGCGTGCTTAAATTACGGCCCCCTTGGAAATCTCCGA
CTGCTCCAGCTGTATGGGTTTGTCCTCCCTGACAATCATTTCGATGCCCT
TGATATATGGGCAAGGATGGACCCGACAGCACCTGAATTCTCGGTCAAAG
ATCGTGCACTCGCTCGCTTGGCTCTCCGGTCGCCTTTCGCCCTGACCAGG
CAGCCCCCCGTCCTCTCCCCCTCTCTCCTCGCGGCAATCCGCATTCAGTG
TGCTAAAGGGTCGGAGATGGCATGTCTGGAAAATGCTTTGAAGGGGCCAC
TAAGTGCGGCCAACGAGAGGGAGACACTGGCGGCCCTGGAAATGGCGCTG
ACTATCATGCGGGAGGCTTTGCCCGTGGCCAGGGAGGAGAAAGAGTGGGG
GGAGGAGGAGTTGCAAGAGAGGGGTGGAGAAGAGAACGTGGAAGCTCAGC
TTGTGCGCACATATTTGGAAAGCGAGCGCGCTCTCTTGACGCAGGGCCTC
GAAGCTGTGGCGGTACTGCAGAGGCAGAAGGCGTACTCTAGTGGGATGGA
ATATTGA
back to top
Synonyms
Publications