NO19G01960.1, NO19G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01960.1
Unique NameNO19G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr19:573575..574353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:573575..574353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01960NO19G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01960.1NO19G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01960.1.cds1NO19G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01960.1.cds2NO19G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01960.1.cds3NO19G01960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01960.1 ID=NO19G01960.1|Name=NO19G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGTGCCATAAAGACCGCAGCATAGCAACAACAGCAGCAGCAAAAGCGGC
TGCGGCACAAAGAGCAAGATATGATGATGATGATGATGATGATGATGGTG
ATGATGAGGAGGAGGAGGAGGAGAAGGAGGGGAAGGAGGGGGAGGAGAGG
GAGGAGAAGGAGAGGAAAAGCAGCGCCAGTAGTAGCACCAGTGGTAGCAC
TAGTAACAGTAGCAGAAGAAGTCGTAGTAGTATTAGTGGTATAAGTAGTA
TAAGTATTAGTAAAAGTAGTAGTAGTAGTATTAGTATTAGTATAAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTAGTA
GTAGTAGTAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTTGT
TGTTGA
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protein sequence of NO19G01960.1

>NO19G01960.1-protein ID=NO19G01960.1-protein|Name=NO19G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MCHKDRSIATTAAAKAAAAQRARYDDDDDDDDGDDEEEEEEKEGKEGEER
EEKERKSSASSSTSGSTSNSSRRSRSSISGISSISISKSSSSSISISISS
SSSSSSSSSSSSSSSSRSSSSSSSSSSSSSGGSSSSSSSSGGSSSSSSSC
C*
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mRNA from alignment at chr19:573575..574353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01960.1 ID=NO19G01960.1|Name=NO19G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at chr19:573575..574353- (Nannochloropsis oceanica)
ATGGTAATAAACCACGCCCCGATGCCTCAAATGCGCTTCGCCATGATAGT
GAGTGTAGGGAAGAAGCACGGGCAACCCCATAGCAGTGCCATAAAGACCG
CAGCATAGCAACAACAGCAGCAGCAAAAGCGGCTGCGGCACAAAGAGCAA
GATATGATGATGATGATGATGATGATGATGGTGATGATGAGGAGGAGGAG
GAGGAGAAGGAGGGGAAGGAGGGGGAGGAGAGGGAGGAGAAGGAGAGGAA
GTAAAGGCACTGTTATCCTTATGGCAGCCGCCAAAAAGCGATAGCAGCTT
TAGAAGAGGGATGACGAGGAGAAACACGAGGAGGGAGAGAAAGTGGTAGC
AGAAGAGGAGTAGTACAAGGAGGAGGAGAGGCAGAAAGAGCAGCTGCAGG
TCCTAAGAAACGGAGGGGGCCTCCAGGGAGGTATTGGAAAGAAGGAGGAC
GAGAAAGGTAATGGAGAGGGGGAGAAGGAGGCGGCAGCAGAAGCAGCGCC
AGTAGTAGCACCAGTGGTAGCACTAGTAACAGTAGCAGAAGAAGTCGTAG
TAGTATTAGTGGTATAAGTAGTATAAGTATTAGTAAAAGTAGTAGTAGTA
GTATTAGTATTAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTA
GTAGTAGTAGTAGTAGTAGTTGTTGTTGA
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Coding sequence (CDS) from alignment at chr19:573575..574353-

>NO19G01960.1 ID=NO19G01960.1|Name=NO19G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr19:573575..574353- (Nannochloropsis oceanica)
ATGTGCCATAAAGACCGCAGCATAGCAACAACAGCAGCAGCAAAAGCGGC
TGCGGCACAAAGAGCAAGATATGATGATGATGATGATGATGATGATGGTG
ATGATGAGGAGGAGGAGGAGGAGAAGGAGGGGAAGGAGGGGGAGGAGAGG
GAGGAGAAGGAGAGGAAAAGCAGCGCCAGTAGTAGCACCAGTGGTAGCAC
TAGTAACAGTAGCAGAAGAAGTCGTAGTAGTATTAGTGGTATAAGTAGTA
TAAGTATTAGTAAAAGTAGTAGTAGTAGTATTAGTATTAGTATAAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTAGTA
GTAGTAGTAGTAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTTGT
TGTTGA
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Synonyms
Publications