NO19G01780.1, NO19G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01780.1
Unique NameNO19G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr19:535019..535897 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:535019..535897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G01780.1 vs.
Match: EWM23673.1 (sterol 4-alpha-methyl-oxidase [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 1.400e-106
Identity = 175/259 (67.57%), Postives = 215/259 (83.01%), Query Frame = 0 
Query:   24 WIGWAAAVLSRLATEHGDLVTFLTVGTLVHESVFIGSNLLYTLLASIPSCRQRWKIQPKADPPKKLVFMALVHIYIFRVLVQLPSTAAYFYIWKRCGGSMHMHPPSAFTCCWQVLTCALSTEVMFYSSHRLFHHPILYKNLHKRHHEFKTPVGVSSEYANVVEDLVVNLPSTLLPPVVMGVHPLVLFLWLGLRILETVDAHSGMALPWSPFHLLPCFAGPLFHDYHHSATTKGAYGVLGLMDFLLGTDKDFKEHMRRRK 283
            WI + A +LSR A +HG+LVTFL  GTLVHES+F+  NL YTL++ +P CRQRWKIQ   +P  +L   A++HIY+ R+ +QLP+   YF +WK CGGSMH   PSA  C WQ+L CAL TE MFYS+HR+FHHP +YK  HK+HHEFK+P+G+SSEYA+V+EDL+VNLPSTLLPPV++GVHPLVL+LWL LRI ETVDAHSG+ALPWSP++LLPCFAGPLFHD+HH ATTKGAYGVLGLMD++ GTDK+FKEH+ RRK
Sbjct:    9 WIRYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRK 267
The following BLAST results are available for this feature:
BLAST of NO19G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23673.11.400e-10667.57sterol 4-alpha-methyl-oxidase [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01780NO19G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01780.1NO19G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01780.1.cds1NO19G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01780.1 ID=NO19G01780.1|Name=NO19G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGCTTGCACAGCTCCTTCCCTGGGATAAGCAACGAACACCAACAATGGC
GTTTTTACTGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACTGTCTC
GCCTTGCGACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAGGCACG
TTGGTCCACGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACACTTCT
GGCCAGCATCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAAAGCAG
ACCCCCCCAAGAAACTAGTTTTTATGGCCCTCGTACACATTTACATTTTC
CGGGTCCTTGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATCTGGAA
GCGCTGTGGGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCACGTGTT
GCTGGCAGGTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTTACTCC
TCGCACCGGTTGTTCCACCATCCCATTCTCTACAAGAATTTACACAAACG
ACATCACGAATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGCCAATG
TTGTGGAGGATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCACCTGTG
GTTATGGGAGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTTAGAAT
ATTGGAAACAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTCTCCCT
TTCATCTTCTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACCACCAC
TCGGCGACGACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGACTTTTT
ACTCGGGACAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAAGCTGG
CGAAAGCGGCCACCAAACGAGCTAGCTGA
back to top

protein sequence of NO19G01780.1

>NO19G01780.1-protein ID=NO19G01780.1-protein|Name=NO19G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MLAQLLPWDKQRTPTMAFLLYDDWIGWAAAVLSRLATEHGDLVTFLTVGT
LVHESVFIGSNLLYTLLASIPSCRQRWKIQPKADPPKKLVFMALVHIYIF
RVLVQLPSTAAYFYIWKRCGGSMHMHPPSAFTCCWQVLTCALSTEVMFYS
SHRLFHHPILYKNLHKRHHEFKTPVGVSSEYANVVEDLVVNLPSTLLPPV
VMGVHPLVLFLWLGLRILETVDAHSGMALPWSPFHLLPCFAGPLFHDYHH
SATTKGAYGVLGLMDFLLGTDKDFKEHMRRRKLAKAATKRAS*
back to top

mRNA from alignment at chr19:535019..535897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01780.1 ID=NO19G01780.1|Name=NO19G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp|location=Sequence derived from alignment at chr19:535019..535897+ (Nannochloropsis oceanica)
ATGCTTGCACAGCTCCTTCCCTGGGATAAGCAACGAACACCAACAATGGC
GTTTTTACTGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACTGTCTC
GCCTTGCGACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAGGCACG
TTGGTCCACGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACACTTCT
GGCCAGCATCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAAAGCAG
ACCCCCCCAAGAAACTAGTTTTTATGGCCCTCGTACACATTTACATTTTC
CGGGTCCTTGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATCTGGAA
GCGCTGTGGGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCACGTGTT
GCTGGCAGGTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTTACTCC
TCGCACCGGTTGTTCCACCATCCCATTCTCTACAAGAATTTACACAAACG
ACATCACGAATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGCCAATG
TTGTGGAGGATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCACCTGTG
GTTATGGGAGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTTAGAAT
ATTGGAAACAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTCTCCCT
TTCATCTTCTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACCACCAC
TCGGCGACGACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGACTTTTT
ACTCGGGACAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAAGCTGG
CGAAAGCGGCCACCAAACGAGCTAGCTGA
back to top

Coding sequence (CDS) from alignment at chr19:535019..535897+

>NO19G01780.1 ID=NO19G01780.1|Name=NO19G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr19:535019..535897+ (Nannochloropsis oceanica)
ATGCTTGCACAGCTCCTTCCCTGGGATAAGCAACGAACACCAACAATGGC
GTTTTTACTGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACTGTCTC
GCCTTGCGACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAGGCACG
TTGGTCCACGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACACTTCT
GGCCAGCATCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAAAGCAG
ACCCCCCCAAGAAACTAGTTTTTATGGCCCTCGTACACATTTACATTTTC
CGGGTCCTTGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATCTGGAA
GCGCTGTGGGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCACGTGTT
GCTGGCAGGTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTTACTCC
TCGCACCGGTTGTTCCACCATCCCATTCTCTACAAGAATTTACACAAACG
ACATCACGAATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGCCAATG
TTGTGGAGGATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCACCTGTG
GTTATGGGAGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTTAGAAT
ATTGGAAACAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTCTCCCT
TTCATCTTCTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACCACCAC
TCGGCGACGACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGACTTTTT
ACTCGGGACAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAAGCTGG
CGAAAGCGGCCACCAAACGAGCTAGCTGA
back to top
Synonyms
Publications