NO19G01750.1, NO19G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01750.1
Unique NameNO19G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr19:526860..528388 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:526860..528388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01750.1 vs.
Match: AHK23678.1 (class II fructose-1,6-bisphosphate aldolase [Pavlova lutheri])

HSP 1 Score: 460.7 bits (1184), Expect = 4.200e-126
Identity = 250/358 (69.83%), Postives = 282/358 (78.77%), Query Frame = 0 
Query:    5 YAAELIATAHAIVATGKGILAADESTGTIGKRFAPINVENIEENRRKYRQLLFTTKGLNEYISGVILFEETLYQKGDDGTS-FVDMLNAQNIIPGIKVDKGVVALPGTDGETVTQGIDDLAKRAAEYYKAGARFAKWRGVLNINDSTGATPSQLAIDQNAQALARYAQLCQQSGLVPIVEPEVLMDGTHSIEHAAAITEKVLAATYKALSDHHVLLEGTLLKPNMVRSGEAAAV--QASAEEIGIATVRVLQHTVPVAVPGITFLSGGLSEENASLALDALNKAPGKKPWALTFSYGRALQTSCLRAWGGHDANIPAAKETLLVRAKANSEASKGVYSG-GAGGAAAKESTFVANYSY 359
            +AAEL ATA AI A GKGILAADES GTIGKRF  I VEN +ENRR YR+LLFTT+GL EYISG ILFEETL+    DGT+  VD+L+ Q IIPGIKVDKGV  LPGT GETVTQG+DDL KR A+YY+AGARFAKWR VLNINDSTGATPS LAI QNA+ LARYA +CQ +GLVPIVEPEVLMDG H I+ A  +TEKV+AA YK LSDH+  LEGTLLKPNMVRSGEAA    +A+A +I  ATV  LQ TVP AVPGITFLSGG+SEE A++ L+ +NK    KPWALTFSYGRALQ S L+ W G   N  AAK+ L+VRAKANS A +G Y+G  AGGAAA  STFV +YSY
Sbjct:   15 FAAELKATAQAIAAPGKGILAADESGGTIGKRFDSIKVENTQENRRGYRELLFTTEGLGEYISGCILFEETLFDVAADGTTKLVDLLHKQGIIPGIKVDKGVQPLPGTSGETVTQGMDDLGKRCAKYYEAGARFAKWRAVLNINDSTGATPSDLAIKQNAETLARYAVICQMNGLVPIVEPEVLMDGAHDIDMAQRVTEKVIAACYKELSDHNAYLEGTLLKPNMVRSGEAAPADKKATAAQIAAATVTCLQRTVPPAVPGITFLSGGMSEEEATVVLNEMNKLATVKPWALTFSYGRALQQSTLKVWMGKKENEGAAKKELIVRAKANSLAVQGKYNGEAAGGAAAATSTFVPSYSY 372
The following BLAST results are available for this feature:
BLAST of NO19G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AHK23678.14.200e-12669.83class II fructose-1,6-bisphosphate aldolase [Pavlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01750NO19G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01750.1NO19G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01750.1.cds1NO19G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01750.1.cds2NO19G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01750.1.cds3NO19G01750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01750.1 ID=NO19G01750.1|Name=NO19G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ATGACTACTCCTTACGCCGCTGAGCTCATTGCGACCGCCCATGCCATCGT
GGCAACGGGCAAAGGCATCCTTGCTGCTGACGAGTCCACGGGCACTATCG
GCAAGCGCTTCGCCCCCATTAATGTGGAGAACATCGAGGAGAACCGCCGC
AAGTACCGCCAGCTCCTCTTCACGACCAAGGGCCTGAACGAGTACATCAG
CGGGGTGATTCTATTCGAGGAAACCCTCTATCAGAAGGGAGACGATGGCA
CTAGCTTCGTCGATATGCTTAATGCACAGAACATCATCCCCGGGATCAAA
GTCGACAAGGGTGTAGTTGCCTTGCCCGGGACCGACGGTGAGACCGTCAC
CCAAGGAATAGACGATCTGGCCAAACGCGCGGCCGAGTACTACAAGGCCG
GGGCCCGCTTCGCCAAGTGGCGTGGAGTGCTCAACATTAATGACAGCACC
GGCGCGACCCCCTCGCAGCTGGCGATTGACCAGAACGCGCAGGCCCTCGC
CCGGTATGCCCAGCTCTGCCAGCAGTCTGGCTTGGTCCCAATTGTCGAGC
CCGAGGTGCTCATGGACGGGACGCACTCCATCGAGCACGCCGCAGCCATC
ACCGAGAAGGTTCTGGCCGCTACTTACAAGGCGCTGTCTGACCACCACGT
TCTCTTGGAAGGCACCCTGCTCAAGCCCAACATGGTGCGCTCCGGCGAGG
CTGCTGCCGTGCAGGCCTCCGCTGAGGAGATTGGCATTGCCACGGTGCGC
GTGCTCCAGCACACGGTCCCAGTGGCTGTGCCTGGCATAACTTTCCTTTC
TGGAGGGTTGTCGGAGGAGAATGCCTCCCTTGCTTTGGATGCCCTAAACA
AGGCGCCGGGAAAGAAGCCTTGGGCGTTGACCTTCTCTTATGGCCGTGCT
CTGCAGACGTCGTGTCTCAGGGCCTGGGGAGGGCATGATGCGAACATCCC
CGCGGCGAAAGAGACGCTGTTGGTCCGTGCCAAGGCCAATTCGGAGGCGA
GCAAGGGCGTGTACAGCGGGGGGGCTGGAGGGGCCGCGGCGAAGGAGTCG
ACGTTTGTGGCTAACTACTCTTATTAA
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protein sequence of NO19G01750.1

>NO19G01750.1-protein ID=NO19G01750.1-protein|Name=NO19G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MTTPYAAELIATAHAIVATGKGILAADESTGTIGKRFAPINVENIEENRR
KYRQLLFTTKGLNEYISGVILFEETLYQKGDDGTSFVDMLNAQNIIPGIK
VDKGVVALPGTDGETVTQGIDDLAKRAAEYYKAGARFAKWRGVLNINDST
GATPSQLAIDQNAQALARYAQLCQQSGLVPIVEPEVLMDGTHSIEHAAAI
TEKVLAATYKALSDHHVLLEGTLLKPNMVRSGEAAAVQASAEEIGIATVR
VLQHTVPVAVPGITFLSGGLSEENASLALDALNKAPGKKPWALTFSYGRA
LQTSCLRAWGGHDANIPAAKETLLVRAKANSEASKGVYSGGAGGAAAKES
TFVANYSY*
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mRNA from alignment at chr19:526860..528388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01750.1 ID=NO19G01750.1|Name=NO19G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp|location=Sequence derived from alignment at chr19:526860..528388- (Nannochloropsis oceanica)
ATGACTACTCCTTACGCCGCTGAGCTCATTGCGACCGCCCATGCCATCGT
GGCAACGGGCAAAGGTAAGCAGGACAGACCAGACAACCCAAAGATATGTG
ACTCCTCTGGACATGGGCATGGGCATGGGCATGTGCTTACTAGCTGTGAC
TGCGGCTGTCGAGGTTGCGTCATTTGTCTTAACAGTTGATGCACTATGAA
GGATGGAGGGGAATAAGCGTTCCACTGCGCTGTTTGTTTTTTGTACTGCT
GCATCCCCGTCGAATACCGTGTGATCTCACAACATCTTTTTTCCAATGTC
CACTTCACTGCAGGCATCCTTGCTGCTGACGAGTCCACGGGCACTATCGG
CAAGCGCTTCGCCCCCATTAATGTGGAGAACATCGAGGAGAACCGCCGCA
AGTACCGCCAGCTCCTCTTCACGACCAAGGGTAAGTCTGCCCAGGAGGAC
ACGGACAAAGCGTCGTGCATCACATCGCTGGGAGGGGAGGTGTGAGGTTG
AGTAGAAGCTATCGCGTATCGACGAATCGCATCAGTGCTTTTCTTTTACT
GCTTATGTGTGTGAGTGCGTGTGTTGAGGCATGCAATCGCCAGTCATTTA
CTCACAGCCTGCCCCTCCCTTCCTTCCTCCCAGGCCTGAACGAGTACATC
AGCGGGGTGATTCTATTCGAGGAAACCCTCTATCAGAAGGGAGACGATGG
CACTAGCTTCGTCGATATGCTTAATGCACAGAACATCATCCCCGGGATCA
AAGTCGACAAGGGTGTAGTTGCCTTGCCCGGGACCGACGGTGAGACCGTC
ACCCAAGGAATAGACGATCTGGCCAAACGCGCGGCCGAGTACTACAAGGC
CGGGGCCCGCTTCGCCAAGTGGCGTGGAGTGCTCAACATTAATGACAGCA
CCGGCGCGACCCCCTCGCAGCTGGCGATTGACCAGAACGCGCAGGCCCTC
GCCCGGTATGCCCAGCTCTGCCAGCAGTCTGGCTTGGTCCCAATTGTCGA
GCCCGAGGTGCTCATGGACGGGACGCACTCCATCGAGCACGCCGCAGCCA
TCACCGAGAAGGTTCTGGCCGCTACTTACAAGGCGCTGTCTGACCACCAC
GTTCTCTTGGAAGGCACCCTGCTCAAGCCCAACATGGTGCGCTCCGGCGA
GGCTGCTGCCGTGCAGGCCTCCGCTGAGGAGATTGGCATTGCCACGGTGC
GCGTGCTCCAGCACACGGTCCCAGTGGCTGTGCCTGGCATAACTTTCCTT
TCTGGAGGGTTGTCGGAGGAGAATGCCTCCCTTGCTTTGGATGCCCTAAA
CAAGGCGCCGGGAAAGAAGCCTTGGGCGTTGACCTTCTCTTATGGCCGTG
CTCTGCAGACGTCGTGTCTCAGGGCCTGGGGAGGGCATGATGCGAACATC
CCCGCGGCGAAAGAGACGCTGTTGGTCCGTGCCAAGGCCAATTCGGAGGC
GAGCAAGGGCGTGTACAGCGGGGGGGCTGGAGGGGCCGCGGCGAAGGAGT
CGACGTTTGTGGCTAACTACTCTTATTAA
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Coding sequence (CDS) from alignment at chr19:526860..528388-

>NO19G01750.1 ID=NO19G01750.1|Name=NO19G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr19:526860..528388- (Nannochloropsis oceanica)
ATGACTACTCCTTACGCCGCTGAGCTCATTGCGACCGCCCATGCCATCGT
GGCAACGGGCAAAGGCATCCTTGCTGCTGACGAGTCCACGGGCACTATCG
GCAAGCGCTTCGCCCCCATTAATGTGGAGAACATCGAGGAGAACCGCCGC
AAGTACCGCCAGCTCCTCTTCACGACCAAGGGCCTGAACGAGTACATCAG
CGGGGTGATTCTATTCGAGGAAACCCTCTATCAGAAGGGAGACGATGGCA
CTAGCTTCGTCGATATGCTTAATGCACAGAACATCATCCCCGGGATCAAA
GTCGACAAGGGTGTAGTTGCCTTGCCCGGGACCGACGGTGAGACCGTCAC
CCAAGGAATAGACGATCTGGCCAAACGCGCGGCCGAGTACTACAAGGCCG
GGGCCCGCTTCGCCAAGTGGCGTGGAGTGCTCAACATTAATGACAGCACC
GGCGCGACCCCCTCGCAGCTGGCGATTGACCAGAACGCGCAGGCCCTCGC
CCGGTATGCCCAGCTCTGCCAGCAGTCTGGCTTGGTCCCAATTGTCGAGC
CCGAGGTGCTCATGGACGGGACGCACTCCATCGAGCACGCCGCAGCCATC
ACCGAGAAGGTTCTGGCCGCTACTTACAAGGCGCTGTCTGACCACCACGT
TCTCTTGGAAGGCACCCTGCTCAAGCCCAACATGGTGCGCTCCGGCGAGG
CTGCTGCCGTGCAGGCCTCCGCTGAGGAGATTGGCATTGCCACGGTGCGC
GTGCTCCAGCACACGGTCCCAGTGGCTGTGCCTGGCATAACTTTCCTTTC
TGGAGGGTTGTCGGAGGAGAATGCCTCCCTTGCTTTGGATGCCCTAAACA
AGGCGCCGGGAAAGAAGCCTTGGGCGTTGACCTTCTCTTATGGCCGTGCT
CTGCAGACGTCGTGTCTCAGGGCCTGGGGAGGGCATGATGCGAACATCCC
CGCGGCGAAAGAGACGCTGTTGGTCCGTGCCAAGGCCAATTCGGAGGCGA
GCAAGGGCGTGTACAGCGGGGGGGCTGGAGGGGCCGCGGCGAAGGAGTCG
ACGTTTGTGGCTAACTACTCTTATTAA
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Synonyms
Publications