NO19G01730.1, NO19G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01730.1
Unique NameNO19G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1397
Alignment locationchr19:521685..523334 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:521685..523334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01730.1 vs.
Match: EWM23695.1 (fructose-bisphosphatase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 535.0 bits (1377), Expect = 2.000e-148
Identity = 272/397 (68.51%), Postives = 315/397 (79.35%), Query Frame = 0 
Query:   15 PPSIQTRFLLLLLLLLAAISTHVDSFWHAAAPSLSQ------RVIAKRMAIPPTMSSGRRTLLSFLQEERAAQPTLVDEDLHLVLAAIASAVKRISYMVRRAGIVDLTGLYTTEHGGEVTLNKGGEKQKKLDVLANDILKEHLQDCGYVAAFASEEEDGVIPLRTGGKFVVVLDPLDGSSNVDASIPTGTIFGVYRSLGDSPAQLQAGALQAGKHQVAAGYCLFSAATLLVLTMGRGTGTHVLTLDHHIGDFVLTTRRLRLPLRGSTYSLNEARFGDWPEGLQRYVTDMKLGRNQKQTPYDLVYVCSLVADAHWVLIRGGMACNPRSHLRLCFEGNPMSLVTEEAGGLASSGDGPRILNIVPDAIHQRTPVFLGSRDDILELESYGDVAQKHNPGYA 406
            PPS    +L+ L+L L+  S      +   +PSL         ++A      P  S   +TLLSFL EE+AA P  +D DLHLVL A++SAVK IS+ VRRAG+ +LTG +  + GGE T N+GGE+QKKLDVLANDILKE L  CG VA FASEEEDG+I LRTG K++VV+DPLDGSSNVDASIPTGTIFGVYRSLGD+PAQLQAG LQAGK QVAAGYCLFSAATLLV++MGRGTGTHV TLD HIGDF+LT RR+R+P RGSTYSLNEAR  DWP+ LQRYVT+MKLG+N+ + PY LVYVCSLVADAHW+L RGGMACNPRSHLRLC+EGNPM L+ EEAGGLAS GDG RIL + P A+HQRTP+FLGS DDILELESYGDV Q +NPGY+
Sbjct:   15 PPS----WLIFLVLFLSIKSYIRSEAFVNTSPSLQPIYQTQPHLMAASFTASPQTSG--QTLLSFLCEEQAAHPISIDGDLHLVLLAVSSAVKAISHAVRRAGLDNLTGFHAKKQGGEATTNQGGERQKKLDVLANDILKEALHGCGQVAGFASEEEDGIISLRTGAKYLVVVDPLDGSSNVDASIPTGTIFGVYRSLGDTPAQLQAGVLQAGKEQVAAGYCLFSAATLLVMSMGRGTGTHVFTLDPHIGDFILTHRRIRMPERGSTYSLNEARHQDWPQTLQRYVTNMKLGQNRTRKPYALVYVCSLVADAHWLLFRGGMACNPRSHLRLCYEGNPMGLIIEEAGGLASCGDGGRILEMSPSAVHQRTPIFLGSLDDILELESYGDVTQNYNPGYS 405
The following BLAST results are available for this feature:
BLAST of NO19G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23695.12.000e-14868.51fructose-bisphosphatase-like protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01730NO19G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01730.1NO19G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01730.1.cds1NO19G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01730.1.cds2NO19G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01730.1 ID=NO19G01730.1|Name=NO19G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp
CAACAGGGCACATTACGACAGTGCCCGCAACCGTACTGCTGCATAGGCGC
AGCGGTGGTGGTTTGACCCTGAAATGCTATCCGAAAAAGACCAGTCCCAG
CTCTCGACCTCCTCCCCCCCCTCGATCCAAACACGATTTCTGCTCCTCCT
ACTCCTCCTGTTAGCCGCCATATCCACACACGTCGACTCTTTTTGGCATG
CCGCAGCGCCGTCACTATCCCAACGCGTGATAGCAAAAAGGATGGCAATT
CCTCCGACAATGTCCTCGGGTCGACGAACACTTCTCTCCTTCCTGCAAGA
GGAGCGTGCTGCCCAACCCACGTTGGTAGACGAGGACCTGCACCTGGTGC
TGGCCGCGATTGCGTCGGCGGTGAAGCGCATCAGCTACATGGTTCGACGA
GCAGGCATTGTGGACCTGACCGGCTTGTACACCACGGAGCACGGTGGAGA
AGTCACCCTTAACAAGGGCGGGGAGAAGCAAAAGAAGCTTGACGTCTTGG
CGAACGACATTCTTAAGGAGCATTTGCAAGATTGCGGGTATGTCGCTGCC
TTTGCCTCAGAGGAAGAAGATGGAGTGATTCCTTTGCGGACCGGTGGCAA
GTTTGTGGTGGTGCTTGACCCTTTAGATGGCTCGTCGAACGTAGACGCAT
CCATTCCCACCGGCACCATCTTTGGAGTCTATCGCAGCCTAGGCGACAGC
CCCGCCCAACTCCAAGCCGGGGCGCTTCAAGCTGGCAAACATCAAGTTGC
TGCTGGGTATTGCCTCTTTTCGGCGGCCACGCTGCTCGTGCTGACAATGG
GTAGAGGCACAGGCACGCATGTTTTGACCCTTGATCATCACATTGGGGAC
TTCGTCTTGACTACCCGCCGTCTCCGACTCCCTTTGCGGGGTTCTACTTA
TTCATTAAATGAGGCTCGATTCGGTGATTGGCCCGAGGGCTTACAGCGTT
ATGTCACGGACATGAAGCTGGGCAGGAATCAAAAACAGACGCCGTATGAT
TTGGTGTATGTTTGTTCCTTAGTGGCAGACGCGCATTGGGTTTTGATTCG
AGGGGGCATGGCATGTAACCCTAGGAGTCATTTGCGGTTGTGCTTTGAGG
GTAACCCTATGAGCTTGGTGACCGAAGAAGCAGGCGGCCTGGCAAGCTCA
GGTGACGGGCCTCGCATCTTGAACATTGTACCTGATGCCATTCACCAACG
CACGCCTGTCTTCTTGGGTAGTCGGGACGATATCTTGGAATTGGAGTCCT
ATGGCGATGTTGCTCAGAAACATAACCCGGGTTACGCATAAATGAAAAGG
GAGCTGAGGGGGAAATGAGATGCTGAGAAGAGAGGAATTAAGTGAATCAA
ATGTAAGAAAGGAGATCCCAAATGTGAAAATGTACCAGAGTCAGGTG
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protein sequence of NO19G01730.1

>NO19G01730.1-protein ID=NO19G01730.1-protein|Name=NO19G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MLSEKDQSQLSTSSPPSIQTRFLLLLLLLLAAISTHVDSFWHAAAPSLSQ
RVIAKRMAIPPTMSSGRRTLLSFLQEERAAQPTLVDEDLHLVLAAIASAV
KRISYMVRRAGIVDLTGLYTTEHGGEVTLNKGGEKQKKLDVLANDILKEH
LQDCGYVAAFASEEEDGVIPLRTGGKFVVVLDPLDGSSNVDASIPTGTIF
GVYRSLGDSPAQLQAGALQAGKHQVAAGYCLFSAATLLVLTMGRGTGTHV
LTLDHHIGDFVLTTRRLRLPLRGSTYSLNEARFGDWPEGLQRYVTDMKLG
RNQKQTPYDLVYVCSLVADAHWVLIRGGMACNPRSHLRLCFEGNPMSLVT
EEAGGLASSGDGPRILNIVPDAIHQRTPVFLGSRDDILELESYGDVAQKH
NPGYA*
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mRNA from alignment at chr19:521685..523334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01730.1 ID=NO19G01730.1|Name=NO19G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at chr19:521685..523334- (Nannochloropsis oceanica)
CAACAGGGCACATTACGACAGTGCCCGCAACCGTACTGCTGCATAGGCGC
AGCGGTGGTGGTTTGACCCTGAAATGCTATCCGAAAAAGACCAGTCCCAG
CTCTCGACCTCCTCCCCCCCCTCGATCCAAACACGATTTCTGCTCCTCCT
ACTCCTCCTGTTAGCCGCCATATCCACACACGTCGACTCTTTTTGGCATG
CCGCAGCGCCGTCACTATCCCAACGCGTGATAGCAAAAAGGATGGCAATT
CCTCCGACAATGTCCTCGGGTCGACGAACACTTCTCTCCTTCCTGCAAGA
GGAGCGTGCTGCCCAACCCACGTTGGTAGACGAGGACCTGCACCTGGTGC
TGGCCGCGATTGCGTCGGCGGTGAAGCGCATCAGCTACATGGTTCGACGA
GCAGGCATTGTGGACCTGACCGGCTTGTACACCACGGAGCACGGTGGAGA
AGTCACCCTTAACAAGGGCGGGGAGAAGCAAAAGAAGCTTGACGTCTTGG
CGAACGACATTCTTAAGGAGCATTTGCAAGATTGCGGGTATGTCGCTGCC
TTTGCCTCAGAGGAAGAAGATGGAGTGATTCCTTTGCGGACCGGTGGCAA
GTTTGTGGTGGTGCTTGACCCTTTAGATGGCTCGTCGAACGTAGACGCAT
CCATTCCCACCGGCACCATCTTTGGAGTCTATCGCAGCCTAGGCGACAGC
CCCGCCCAACTCCAAGCCGGGGCGCTTCAAGCTGGCAAACATCAAGTTGC
TGCTGGGTATTGCCTCTTTTCGGCGGCCACGCTGCTCGTGCTGACAATGG
GTAGAGGCACAGGCACGCATGTTTTGACCCTTGATCATCACATTGGGGAC
TTCGTCTTGACTACCCGCCGTCTCCGACTCCCTTTGCGGGGTTCTACTTA
TTCATTAAATGAGGCTCGATTCGGTGATTGGCCCGAGGGCTTACAGCGTT
ATGTCACGGACATGAAGCTGGGCAGGAATCAAAAACAGACGCCGTATGAT
TTGGTGTATGTTTGTTCCTTAGTGGCAGACGCGCATTGGGTTTTGATTCG
AGGGGGCATGGCATGTAACCCTAGGAGTCATTTGCGGTTGTGCTTTGAGG
GTAACCCTATGAGCTTGGTACGTATGAGGTTGGGGGTTGGCGGTATTGAT
TGCATTTCTTTGGAGCTTGCAGGTTGTGTTTGTGTTTGTACAACTGTCTC
GGTAGGCATGTTCCGGGTTTGTACTCACTATTTCACTTTTTGGGGTGCGG
TGAGATATACGTGCTAATGAAATAATTTTATAATAACATACCCCTGGTTT
TCCATCATTTATCGTCTAAATCAATGCTACCCTTCTTCTTGTCCCCTCAC
TACACCTCACAATACAACAGGTGACCGAAGAAGCAGGCGGCCTGGCAAGC
TCAGGTGACGGGCCTCGCATCTTGAACATTGTACCTGATGCCATTCACCA
ACGCACGCCTGTCTTCTTGGGTAGTCGGGACGATATCTTGGAATTGGAGT
CCTATGGCGATGTTGCTCAGAAACATAACCCGGGTTACGCATAAATGAAA
AGGGAGCTGAGGGGGAAATGAGATGCTGAGAAGAGAGGAATTAAGTGAAT
CAAATGTAAGAAAGGAGATCCCAAATGTGAAAATGTACCAGAGTCAGGTG
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Coding sequence (CDS) from alignment at chr19:521685..523334-

>NO19G01730.1 ID=NO19G01730.1|Name=NO19G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr19:521685..523334- (Nannochloropsis oceanica)
ATGCTATCCGAAAAAGACCAGTCCCAGCTCTCGACCTCCTCCCCCCCCTC
GATCCAAACACGATTTCTGCTCCTCCTACTCCTCCTGTTAGCCGCCATAT
CCACACACGTCGACTCTTTTTGGCATGCCGCAGCGCCGTCACTATCCCAA
CGCGTGATAGCAAAAAGGATGGCAATTCCTCCGACAATGTCCTCGGGTCG
ACGAACACTTCTCTCCTTCCTGCAAGAGGAGCGTGCTGCCCAACCCACGT
TGGTAGACGAGGACCTGCACCTGGTGCTGGCCGCGATTGCGTCGGCGGTG
AAGCGCATCAGCTACATGGTTCGACGAGCAGGCATTGTGGACCTGACCGG
CTTGTACACCACGGAGCACGGTGGAGAAGTCACCCTTAACAAGGGCGGGG
AGAAGCAAAAGAAGCTTGACGTCTTGGCGAACGACATTCTTAAGGAGCAT
TTGCAAGATTGCGGGTATGTCGCTGCCTTTGCCTCAGAGGAAGAAGATGG
AGTGATTCCTTTGCGGACCGGTGGCAAGTTTGTGGTGGTGCTTGACCCTT
TAGATGGCTCGTCGAACGTAGACGCATCCATTCCCACCGGCACCATCTTT
GGAGTCTATCGCAGCCTAGGCGACAGCCCCGCCCAACTCCAAGCCGGGGC
GCTTCAAGCTGGCAAACATCAAGTTGCTGCTGGGTATTGCCTCTTTTCGG
CGGCCACGCTGCTCGTGCTGACAATGGGTAGAGGCACAGGCACGCATGTT
TTGACCCTTGATCATCACATTGGGGACTTCGTCTTGACTACCCGCCGTCT
CCGACTCCCTTTGCGGGGTTCTACTTATTCATTAAATGAGGCTCGATTCG
GTGATTGGCCCGAGGGCTTACAGCGTTATGTCACGGACATGAAGCTGGGC
AGGAATCAAAAACAGACGCCGTATGATTTGGTGTATGTTTGTTCCTTAGT
GGCAGACGCGCATTGGGTTTTGATTCGAGGGGGCATGGCATGTAACCCTA
GGAGTCATTTGCGGTTGTGCTTTGAGGGTAACCCTATGAGCTTGGTGACC
GAAGAAGCAGGCGGCCTGGCAAGCTCAGGTGACGGGCCTCGCATCTTGAA
CATTGTACCTGATGCCATTCACCAACGCACGCCTGTCTTCTTGGGTAGTC
GGGACGATATCTTGGAATTGGAGTCCTATGGCGATGTTGCTCAGAAACAT
AACCCGGGTTACGCATAA
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Synonyms
Publications