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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:517632..521662 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01720.3 vs.
Match: EWM23679.1 (camp responsive element modulator [Nannochloropsis gaditana]) HSP 1 Score: 406.4 bits (1043), Expect = 1.100e-109 Identity = 236/332 (71.08%), Postives = 261/332 (78.61%), Query Frame = 0
Query: 23 SRNQHQQDDDDQDSLQGGGGGVYQQGQMNSLPQAFEKKLRRLEKNRESARECRRRKKEHVVELQKQVALLEAENLKLKLQLKVGEESQAQERQEKGRITKKLDDMVKTGASESDIWQTIDMLKERYSDYGSDRRSAIEFHTNQLEKLLLPTKLTKLCMWMLFNM-GDENGQTLSPVSAPTLLPSPSAHGKPENTSPPSSATATDAGAQAAARHLWSILSEELQVTPDQQASLLEHRGSVVAMDADLDVTAGMLRDLRALIDDKNSSLDQELQEVQKILTPTQTAKFILWITRNPACMHMLNQLWRAVYERSEGGGGGGGRQGGGQGGRHGGG 354
S++ DDDDQD+ Q +YQ GQ+NSLPQAFEKKLRRLEKNRESARECRRRKKEHVVELQKQVA LEAENLKLKLQLKVGEESQAQERQEK RITKKLD+MVKTGASESDIWQTIDM KERYSDYGSDRRSAIEFHTNQLEKLLLPTKLTK+CMWML NM G + L+ + L+ S + A AR LW++LSEEL VT +QQA+LL+ R ++VAMDAD+ VT+ MLR+LRALI+DKNSSLDQEL EVQKIL+PTQTAKFILWITRNPACMHMLNQLWRAVYERS GG G G R G +G G
Sbjct: 98 SKSLRHNDDDDQDTQQVKSN-MYQHGQINSLPQAFEKKLRRLEKNRESARECRRRKKEHVVELQKQVAHLEAENLKLKLQLKVGEESQAQERQEKARITKKLDEMVKTGASESDIWQTIDMFKERYSDYGSDRRSAIEFHTNQLEKLLLPTKLTKVCMWMLLNMKGTDIVGGLNMTESKGLV---------------GSLCNVEDSASEPARQLWAVLSEELHVTREQQAALLQRRDNIVAMDADIGVTSAMLRELRALIEDKNSSLDQELLEVQKILSPTQTAKFILWITRNPACMHMLNQLWRAVYERSGGGEGTGDRSGTREGSGEADG 413
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01720.3 ID=NO19G01720.3|Name=NO19G01720.3|organism=Nannochloropsis oceanica|type=mRNA|length=3560bp CGTTATCGCTTGCTTCTTTTTCTTCGAGTCAACTCTCTCTTGCTATGACA AGTTCCTTCCCCAAACGTACCCGGCGGCTGGAAAAAAAGGCCTACAAACG CAAAGTTGGAACCTTTTTAGCCACACATACCTCCGTCTACTCTTGCACGC ATTCATGTCTTTCCAAACTGTACACCTGGCGCGTTTGCTGAGACCTGCGG CCACGGCATTTTTGTTCAGATCAAGTGGTCCAAGCCCCGGCTCATGGATC GCTCCTCGCTCCCCTAGGTAGTCGATCCTCATTGCCCATGCCTCTTACCA CACACGCACAGATTCCTCCGACTGGACACGTCTGTAAGAACCTCTTGGGC CTGTTTTCCGCCCTTCTCGAAGTCGTTACCCCTCAGCTGGCACAGAGGCA AAGGCGAAAATCAAAAGAGTGCTGGGGGCGAAAATAGCGCGGACAGAGCA CAATCCATGGCTACACCAGCAAATGAAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGTGGCGGTGGTCTCCATCCTCCGCTCCCCAGACCAGCTT CAGGTAGCAACCTTCGAAGAGGTACGCAAGCAGAGGGCGAGAGGGGAACC ACATGTTGCGTCGTGTAACCTTTGCTCATTATTTGGTGATGTGATGATAA CATTGTGCGTCTAATCCCACCAAGCTCTTGACTCTCCTCTCTTGTGCCCC GATTTCCTCCTTGCACTCACCCCAACATCTACCACCGGCCATCACATAGT CACATCCAATTCATCCCTACGTCTCCAGCAGCAGCAGCAGCAGCAACTCC AACTACAGCAGCAACAAGAACTTTATCCCCACGCCAAGTCCGAGCCACCA AACACCCTGACCATCTCTCCGCACATGCAGCAACTGCAGCACCAGCAGGA GCAACTATTTATCCCCATGACTAGTCCCAACAGCCACACAAGCCGAAATC AGCATCAGCAGGACGACGATGACCAAGACTCGCTACAGGGAGGGGGAGGA GGGGTGTACCAACAAGGGCAAATGAACAGCTTGCCCCAGGCCTTCGAGAA GAAGCTGCGACGGCTGGAGAAGAACCGAGAGTCAGCTCGTGAATGTCGAA GGAGGAAGAAAGAGCACGTGGTGGAGCTCCAGAAGCAGGTAGCCCTCCTT GAGGCGGAGAACTTGAAGTTGAAGCTGCAACTCAAGGTGGGAGAGGAGAG CCAGGCGCAGGAGCGGCAGGAGAAGGGTCGGATAACTAAAAAGCTGGACG ATATGGTGAAAACGGGCGCGAGTGAGTCAGACATCTGGCAGACGATCGAT ATGCTCAAGGAGAGGTACTCGGACTACGGCAGCGATCGACGCTCTGCCAT TGAGTTTCACACCAACCAGCTCGAGAAGCTCCTCCTCCCCACCAAACTCA CCAAGCTCTGCATGTGGATGCTCTTCAACATGGGCGACGAGAACGGTCAA ACTTTATCTCCGGTCTCCGCCCCCACTCTTCTCCCTTCTCCCTCTGCCCA CGGCAAACCCGAGAATACTTCCCCCCCCTCCTCCGCTACTGCTACTGATG CTGGTGCCCAAGCCGCGGCACGGCATCTTTGGTCGATTCTCTCAGAAGAA CTGCAGGTAACACCAGATCAGCAAGCGTCCCTCTTAGAGCACCGGGGCAG CGTAGTCGCAATGGACGCTGACTTAGACGTAACCGCAGGCATGCTCCGCG ATCTTCGCGCCCTGATCGACGATAAAAACTCGAGTCTGGATCAGGAGCTG CAGGAGGTGCAGAAGATCCTCACTCCCACTCAAACAGCCAAGTTTATTCT ATGGATTACGCGGAACCCTGCTTGTATGCACATGCTCAATCAGTTATGGC GGGCCGTATATGAGCGTTCCGAGGGGGGAGGAGGAGGAGGAGGAAGACAA GGAGGAGGACAAGGCGGACGACATGGAGGTGGAGGGAATTTGGGAGGGTT TAGTGGTCATCATCAATGGAGGACCATCGCTCCGCAAGCGGCTGCTCCTG CTGCTGCGCTTGGAGCTGGGGGAGGTACGATCAACGGCAGTATCGGTAGC AGCATGAGTAGTAGCAGTGCCAGTATTGGAGGTGGGAAGGCGCCGTCACC AGCCCAGCTGCAAGGGTCGTTGATATAAATCAAGAATTAACGCAGGAATT TTACAGAAGGGAAAGTGTGATGGGTCTGAAAAGAGGAAGGGAAATTGTCA TATGAAGCGAAATACCCGGCCTTACAGTGCACACTGGCTTACTTTCTTTC TGAGAGGTAGACTCAATAAAATGAGTTTTTCAGTATCCCTGTGTGTGTGG ATGGGCGCGTGCATATGTTCGAGTGTCTGTGTGCTGCGAGTGTTCTCCCT TTCGTCCTCGCTCTCTTGATAGAGCGAGTTCGTTCGATCCATATCTTTAA ATCACAACCACCGTCAACATGCTCCGGTTTACCAGCACACACTCTTCCCC CCTTACTCCCTCCCTTTCCATCAACCTCTTTCCCCTGCACCGCGCACCCC TTTCTAATTTCCCATTTCATCAGTGTGTCCTTTGGTGTGACCGACCAGCA GCAAAATTTGAAAACTTAATAAATGGAAGTAGCACTCACAAGCCCAAAAA ACGATACCTGTTGGGAGTTAACAGTGGAAGCGGTTAAACCGCCTGGCACA CCACCAAAGTTGTTAAATCAAAGGCTTTCACTTTCACCTCTCCACGCTTC TTCATCACTAGAACCATTATATACCTCCTTCCCACTCACTTTCACGATAA ATTGCCCCTACTAGCTTCCCTCTTTCCCCTTCGCCTGCCCAGTCTGACTC CTTCTCAATCTCTTCCTTTTCCACCGCCATTCCCGTCATCCTTCTGCTTA ACCTCCGCAAGGAGAGCCACATGCCGCGCATGCTGCTTCTCGAGTTTCGC GCGCAAATTCTTGCTGAGAGGACGCCCTTTTGCGTCTGCTGTGGGAATCT CCAACTCATCAAACGATGTGAACTTGCCTTCATATGGGCCCTGCTTGAAA AGCTCCGAAAGGGCAACACTAGCTCTAGGCCTCTTGTGCTGCCTGCCGAC ACGTGGCGCAGCCATAGAGGCAGTAGCAGACGCCGAAGCAGCAGCAGCAG CGGCAAGTGGAGAAGGAGGAAGATTGGAAGGAGGTGGAGAAGGAGAGGGA GGAGGAGGAGGAGGGGCTCCCAGAGCCCAGTGACATTTTCCCACCCCAAG GTCTTTCACCTGCAGACCCAAGCGAGCCAACTCACCATCTCGGAAATCAT CGCACAAACGCAACAACCTACGCGCAAGCTCTGTACTACTGCTACTCTTC GGCTTCTCCCCTCCCGTCGCGCCAGTTTCTCTAAAACACCCATGTTCTTC CCGGTCCTCCAAGGCAGCAGCGCGCACACAAGCCCGGAAGTCCACCACAG CCCTAGAAAGAGCCTCTGTGGTGGCAGCTGTAGTGGCCATGGACGAAGAT GACAGAGGGGACGACGAAGAGAAGGACTGCATAGCATCATCAATGCTCTG CACACCAAATAGTCTCAAAATATAGATCACGTACCCTGCCACATTCCTCA GTACCTCCTC back to topprotein sequence of NO19G01720.3 >NO19G01720.3-protein ID=NO19G01720.3-protein|Name=NO19G01720.3|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp MQQLQHQQEQLFIPMTSPNSHTSRNQHQQDDDDQDSLQGGGGGVYQQGQM NSLPQAFEKKLRRLEKNRESARECRRRKKEHVVELQKQVALLEAENLKLK LQLKVGEESQAQERQEKGRITKKLDDMVKTGASESDIWQTIDMLKERYSD YGSDRRSAIEFHTNQLEKLLLPTKLTKLCMWMLFNMGDENGQTLSPVSAP TLLPSPSAHGKPENTSPPSSATATDAGAQAAARHLWSILSEELQVTPDQQ ASLLEHRGSVVAMDADLDVTAGMLRDLRALIDDKNSSLDQELQEVQKILT PTQTAKFILWITRNPACMHMLNQLWRAVYERSEGGGGGGGRQGGGQGGRH GGGGNLGGFSGHHQWRTIAPQAAAPAAALGAGGGTINGSIGSSMSSSSAS IGGGKAPSPAQLQGSLI* back to topmRNA from alignment at chr19:517632..521662- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01720.3 ID=NO19G01720.3|Name=NO19G01720.3|organism=Nannochloropsis oceanica|type=mRNA|length=4031bp|location=Sequence derived from alignment at chr19:517632..521662- (Nannochloropsis oceanica) CGTTATCGCTTGCTTCTTTTTCTTCGAGTCAACTCTCTCTTGCTATGACA
AGTTCCTTCCCCAAACGTACCCGGCGGCTGGAAAAAAAGGCCTACAAACG
CAAAGTTGGAACCTTTTTAGCCACACATACCTCCGTCTACTCTTGCACGC
ATTCATGTCTTTCCAAACTGTACACCTGGCGCGTTTGCTGAGACCTGCGG
CCACGGCATTTTTGTTCAGATCAAGTGGTCCAAGCCCCGGCTCATGGATC
GCTCCTCGCTCCCCTAGGTAGTCGATCCTCATTGCCCATGCCTCTTACCA
CACACGCACAGATTCCTCCGACTGGACACGTCTGTAAGAACCTCTTGGGC
CTGTTTTCCGCCCTTCTCGAAGTCGTTACCCCTCAGCTGGCACAGAGGTA
AGAGGGCACTCCGATTGGATATCATACGTGACGGACGGAGCACACACGTA
ATGCAGAGACCAAAGCCAAAAATTCACACTGGTCCCCATCCCCCTAACAC
AAGGCAAAGGCGAAAATCAAAAGAGTGCTGGGGGCGAAAATAGCGCGGAC
AGAGCACAATCCATGGCTACACCAGCAAATGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGTGGCGGTGGTCTCCATCCTCCGCTCCCCAGAC
CAGCTTCAGGTAGCAACCTTCGAAGAGGTACGCAAGCAGAGGGCGAGAGG
GGAACCACATGTTGCGTCGTGTAACCTTTGCTCATTATTTGGTGATGTGA
TGATAACATTGTGCGTCTAATCCCACCAAGCTCTTGACTCTCCTCTCTTG
TGCCCCGATTTCCTCCTTGCACTCACCCCAACATCTACCACCGGCCATCA
CATAGTCACATCCAATTCATCCCTACGTCTCCAGCAGCAGCAGCAGCAGC
AACTCCAACTACAGCAGCAACAAGAACTTTATCCCCACGCCAAGTCCGAG
CCACCAAACACCCTGACCATCTCTCCGCACATGCAGCAACTGCAGCACCA
GCAGGAGCAACTATTTATCCCCATGACTAGTCCCAACAGCCACACAAGCC
GAAATCAGCATCAGCAGGACGACGATGACCAAGACTCGCTACAGGGAGGG
GGAGGAGGGGTGTACCAACAAGGGCAAATGAACAGCTTGCCCCAGGCCTT
CGAGAAGAAGCTGCGACGGCTGGAGAAGAACCGAGAGTCAGCTCGTGAAT
GTCGAAGGAGGAAGAAAGAGCACGTGGTGGAGCTCCAGAAGCAGGTAGCC
CTCCTTGAGGCGGAGAACTTGAAGTTGAAGCTGCAACTCAAGGTGGGAGA
GGAGAGCCAGGCGCAGGAGCGGCAGGAGAAGGGTCGGATAACTAAAAAGC
TGGACGATATGGTACGCCCTGCCTTCTGTCTTAATATCGGGGGGAAGTGG
GTCGCCTCGCAATCTGTCATGTCTATCAAGGCTTTGTGCGAGCTCTGTCG
TCTTCCAGTCGGCAGATATTCCCTTGTAACCTCGATCATCTGGCCGGGGA
GCATCGCGTCGTTTTTACTTTCCATTGCTCCCCACTTCTTCCTCTCTCTT
CAACAGGTGAAAACGGGCGCGAGTGAGTCAGACATCTGGCAGACGATCGA
TATGCTCAAGGAGAGGTACTCGGACTACGGCAGCGATCGACGCTCTGCCA
TTGAGTTTCACACCAACCAGCTCGAGAAGGTACGCGCGTGGTGGGAGACT
AGGGAGAGAGGAAGGAAGAGAGAACAATTATTCACTTGTTTTGTTCTTTT
CTAGAAGACTAATCCAGTCCTTGCTTTCATTATACCTGAATCTTTTTCTC
ACTGTTTTGCCGCCCACTTCTCCTCCTTCCTTCCCTTGCACCCCTGCAGC
TCCTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATGCTCTTCAAC
ATGGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGCCCCCACTCT
TCTCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTTCCCCCCCCT
CCTCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCACGGCATCTT
TGGTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCAGCAAGCGTC
CCTCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTGACTTAGACG
TAACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGACGATAAAAAC
TCGAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCTCACTCCCAC
TCAAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTGCTTGTATGC
ACATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCCGAGGGGGGA
GGAGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACGACATGGAGG
TGGAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGAGGACCATCG
CTCCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGGGGAGGTACG
ATCAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGCCAGTATTGG
AGGTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGTTGATATAAA
TCAAGAATTAACGCAGGAATTTTACAGAAGGGAAAGTGTGATGGGTCTGA
AAAGAGGAAGGGAAATTGTCATATGAAGCGAAATACCCGGCCTTACAGTG
CACACTGGCTTACTTTCTTTCTGAGAGGTAGACTCAATAAAATGAGTTTT
TCAGTATCCCTGTGTGTGTGGATGGGCGCGTGCATATGTTCGAGTGTCTG
TGTGCTGCGAGTGTTCTCCCTTTCGTCCTCGCTCTCTTGATAGAGCGAGT
TCGTTCGATCCATATCTTTAAATCACAACCACCGTCAACATGCTCCGGTT
TACCAGCACACACTCTTCCCCCCTTACTCCCTCCCTTTCCATCAACCTCT
TTCCCCTGCACCGCGCACCCCTTTCTAATTTCCCATTTCATCAGTGTGTC
CTTTGGTGTGACCGACCAGCAGCAAAATTTGAAAACTTAATAAATGGAAG
TAGCACTCACAAGCCCAAAAAACGATACCTGTTGGGAGTTAACAGTGGAA
GCGGTTAAACCGCCTGGCACACCACCAAAGTTGTTAAATCAAAGGCTTTC
ACTTTCACCTCTCCACGCTTCTTCATCACTAGAACCATTATATACCTCCT
TCCCACTCACTTTCACGATAAATTGCCCCTACTAGCTTCCCTCTTTCCCC
TTCGCCTGCCCAGTCTGACTCCTTCTCAATCTCTTCCTTTTCCACCGCCA
TTCCCGTCATCCTTCTGCTTAACCTCCGCAAGGAGAGCCACATGCCGCGC
ATGCTGCTTCTCGAGTTTCGCGCGCAAATTCTTGCTGAGAGGACGCCCTT
TTGCGTCTGCTGTGGGAATCTCCAACTCATCAAACGATGTGAACTTGCCT
TCATATGGGCCCTGCTTGAAAAGCTCCGAAAGGGCAACACTAGCTCTAGG
CCTCTTGTGCTGCCTGCCGACACGTGGCGCAGCCATAGAGGCAGTAGCAG
ACGCCGAAGCAGCAGCAGCAGCGGCAAGTGGAGAAGGAGGAAGATTGGAA
GGAGGTGGAGAAGGAGAGGGAGGAGGAGGAGGAGGGGCTCCCAGAGCCCA
GTGACATTTTCCCACCCCAAGGTCTTTCACCTGCAGACCCAAGCGAGCCA
ACTCACCATCTCGGAAATCATCGCACAAACGCAACAACCTACGCGCAAGC
TCTGTACTACTGCTACTCTTCGGCTTCTCCCCTCCCGTCGCGCCAGTTTC
TCTAAAACACCCATGTTCTTCCCGGTCCTCCAAGGCAGCAGCGCGCACAC
AAGCCCGGAAGTCCACCACAGCCCTAGAAAGAGCCTCTGTGGTGGCAGCT
GTAGTGGCCATGGACGAAGATGACAGAGGGGACGACGAAGAGAAGGACTG
CATAGCATCATCAATGCTCTGCACACCAAATAGTCTCAAAATATAGATCA
CGTACCCTGCCACATTCCTCAGTACCTCCTC back to topCoding sequence (CDS) from alignment at chr19:517632..521662- >NO19G01720.3 ID=NO19G01720.3|Name=NO19G01720.3|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr19:517632..521662- (Nannochloropsis oceanica) ATGCAGCAACTGCAGCACCAGCAGGAGCAACTATTTATCCCCATGACTAG TCCCAACAGCCACACAAGCCGAAATCAGCATCAGCAGGACGACGATGACC AAGACTCGCTACAGGGAGGGGGAGGAGGGGTGTACCAACAAGGGCAAATG AACAGCTTGCCCCAGGCCTTCGAGAAGAAGCTGCGACGGCTGGAGAAGAA CCGAGAGTCAGCTCGTGAATGTCGAAGGAGGAAGAAAGAGCACGTGGTGG AGCTCCAGAAGCAGGTAGCCCTCCTTGAGGCGGAGAACTTGAAGTTGAAG CTGCAACTCAAGGTGGGAGAGGAGAGCCAGGCGCAGGAGCGGCAGGAGAA GGGTCGGATAACTAAAAAGCTGGACGATATGGTGAAAACGGGCGCGAGTG AGTCAGACATCTGGCAGACGATCGATATGCTCAAGGAGAGGTACTCGGAC TACGGCAGCGATCGACGCTCTGCCATTGAGTTTCACACCAACCAGCTCGA GAAGCTCCTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATGCTCT TCAACATGGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGCCCCC ACTCTTCTCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTTCCCC CCCCTCCTCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCACGGC ATCTTTGGTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCAGCAA GCGTCCCTCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTGACTT AGACGTAACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGACGATA AAAACTCGAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCTCACT CCCACTCAAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTGCTTG TATGCACATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCCGAGG GGGGAGGAGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACGACAT GGAGGTGGAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGAGGAC CATCGCTCCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGGGGAG GTACGATCAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGCCAGT ATTGGAGGTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGTTGAT ATAA back to top
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