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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:504093..506350 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01670.1 vs.
Match: EWM23683.1 (peptide transporter ptr1 [Nannochloropsis gaditana]) HSP 1 Score: 893.6 bits (2308), Expect = 3.700e-256 Identity = 467/688 (67.88%), Postives = 541/688 (78.63%), Query Frame = 0
Query: 1 MDDEQ---------TQVPLL-LGEPVSDDGDDENARE--AHEAITAVAGMMDTPHKPQFLQSQILWRVCSFIVVTEFCERLSYYGVGGSLVLLFQSHLNYTNAQADNAYAIWSGLCYCAPLVGGWLADSYLGRFKTIGVFSGIYLVGLLVLIIGVLPRNPTDPIGGGA-ATRTTTEALVYIGIYTLALGDGGIKPNVSTFGADQF-SQSAEGKRAMESFFNSFYAAINCGALISFTLIVSITQYGLPWLGGTDYRFAVGFSIAALFTAGGIGIFWSGRRRYKMMPPTGSVLATSMAILFQAAGKSLRAWRVRQDWIVSAGAAAAAGEEGNGSTCGSSSGDSGSCSSHLPVIAPSGDDSASSS---WLDQAKRSHGGSFAAVDVEGVKCVCRLLPFLFFLIPYWTCYTQMSTSFQNQGCQMDLSLKPLLPSTKIAVSTLNLFDTLGIILLVPFFDRIVYPFFRRHGHPLSQLRRFGAGFVFASLAMIAAGLLEIYRKSQAPSETSYPTNSTDTNTILFLEQHISACKNIDDFNPFAYQAWFAAGGRSSSTTPPAACEQIGPSSSDGSLPLSSILCQNVPLVSPVSVFWQVPQFVLIGISEILTSITSYAFFYAQAPPNMRSFAASLNLLTTALGTWLCIPLVALANSGDVEWVPSDVNKGHLAGFFFLLAGIMLSMTAGFMVQAKRYQP 672
MDDEQ T+ P+L L + V++D D+ + A E + +A + P + + QSQ+L R+CSFI+VTEFCERLSYYG+GGSLVLLFQS LNYTNAQADNAYA+WSGLCYCAPL+GGWLADSYLGRFKTIG+FSG+YL+GL++LIIGVLPR+ D A A RT TEALVYIGIYT+ALGDGGIKPNVSTFGADQF S+SAEGKRAMESFFN FYAAINCGALISFTL+VSITQYG+ W+GG DYRF+VGFS+AA+ T GI IF GR RY +PP+GSVLA S++IL QAA K WR +A E G + G+ LP P S WLD+AKRS+GGSFAA DVEGVKCV RLLPFL FLIPYWTCYTQMSTSFQNQGCQMDLSLKP P+TKIAVSTLNLFDTLGIILLVP FDR+VYPFF R G PL+QL+RFGAGFVFA+LAM AG+LE+YRKSQ+P ET YPT++ D T+ FLE+HISACKNIDD+NP AYQ+WFAAG +S PP+AC ++GP+ S+G+LPLSSI C VPL+S VSVFWQ+PQF+L+GISEILTSITSYAFFYAQAPPNMRSF+ASLNLLTTALGTWLCIPLVALANSG V+WVPSDVNKG+LA FFF+LAG+M M F A++Y+P
Sbjct: 1 MDDEQLRASAVARMTRAPVLPLLQGVNEDAHDQEGTDLCAFEELEGIAAL--EPLQTRTPQSQVLVRICSFILVTEFCERLSYYGIGGSLVLLFQSQLNYTNAQADNAYAVWSGLCYCAPLLGGWLADSYLGRFKTIGIFSGVYLLGLIILIIGVLPRDQMDATYADASAARTLTEALVYIGIYTMALGDGGIKPNVSTFGADQFDSRSAEGKRAMESFFNIFYAAINCGALISFTLVVSITQYGVSWIGGMDYRFSVGFSVAAIITTCGIAIFLFGRHRYTKLPPSGSVLARSLSILLQAARKGYGHWR--------GSRRSAFSESHRGDISNGDHANIGTVPL-LPSAPPPFSSQLGSPALPWLDRAKRSNGGSFAAADVEGVKCVWRLLPFLLFLIPYWTCYTQMSTSFQNQGCQMDLSLKPFFPATKIAVSTLNLFDTLGIILLVPLFDRVVYPFFERRGQPLTQLQRFGAGFVFAALAMGTAGVLELYRKSQSPVETKYPTDADDMTTVHFLEEHISACKNIDDYNPLAYQSWFAAGAAASGRPPPSACAKVGPTYSNGTLPLSSIECDFVPLISHVSVFWQIPQFILVGISEILTSITSYAFFYAQAPPNMRSFSASLNLLTTALGTWLCIPLVALANSGKVQWVPSDVNKGNLAAFFFMLAGMMACMIVAFFFHARKYKP 677
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01670.1 ID=NO19G01670.1|Name=NO19G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp
ATGGACGACGAACAAACGCAAGTGCCTTTGCTGCTTGGCGAGCCCGTCTC
GGACGACGGGGACGACGAGAATGCACGCGAAGCACACGAGGCAATAACCG
CAGTCGCTGGGATGATGGACACACCACACAAGCCCCAATTTCTCCAGTCT
CAAATCTTGTGGCGGGTCTGTAGCTTCATCGTTGTCACCGAGTTCTGTGA
GCGCTTGAGCTACTACGGCGTTGGCGGCTCCTTGGTCTTACTTTTCCAGT
CTCACCTAAATTATACCAACGCCCAGGCCGATAACGCGTATGCCATTTGG
TCAGGTTTATGTTATTGTGCCCCCTTGGTAGGCGGATGGCTAGCCGACTC
TTACTTGGGACGATTCAAAACGATTGGCGTTTTCAGCGGTATTTACTTGG
TTGGTCTGCTAGTCTTGATCATCGGTGTCTTGCCCCGCAACCCAACGGAT
CCAATCGGCGGGGGGGCAGCCACCCGTACCACTACTGAAGCCCTTGTGTA
CATTGGGATTTACACGCTGGCTTTAGGGGATGGTGGGATCAAGCCCAATG
TGTCCACCTTTGGGGCTGATCAGTTTTCGCAATCAGCGGAAGGCAAACGG
GCCATGGAGTCGTTTTTTAATTCATTTTATGCGGCGATTAATTGTGGAGC
ACTGATAAGTTTCACGCTTATTGTAAGCATAACGCAGTATGGCCTTCCTT
GGCTGGGTGGGACAGACTATAGATTCGCTGTAGGTTTCAGTATCGCGGCG
CTTTTCACTGCTGGTGGTATTGGTATTTTTTGGTCCGGGCGACGACGATA
TAAAATGATGCCGCCGACGGGGAGCGTCTTGGCAACGTCAATGGCAATCT
TGTTCCAAGCCGCAGGGAAGAGTCTGCGGGCCTGGAGGGTGCGACAAGAC
TGGATTGTTTCAGCAGGAGCAGCAGCAGCCGCAGGTGAGGAAGGAAATGG
GAGCACTTGTGGTAGCAGCAGCGGTGATAGTGGCAGCTGTAGCAGCCATC
TGCCTGTTATTGCTCCTAGTGGAGATGATTCGGCATCTTCATCGTGGTTG
GATCAAGCGAAGCGATCACATGGCGGTTCTTTTGCTGCAGTGGACGTAGA
GGGCGTGAAATGCGTGTGCCGTTTGCTGCCCTTCTTGTTTTTCCTCATTC
CCTATTGGACTTGCTACACCCAGATGAGCACGTCCTTCCAAAACCAAGGC
TGTCAAATGGACCTTTCACTCAAGCCCCTCCTCCCCTCCACTAAAATCGC
CGTCTCTACACTCAACCTCTTTGACACTCTCGGCATCATCCTTCTCGTCC
CCTTCTTCGATCGCATCGTCTATCCCTTCTTCCGACGCCACGGACATCCT
CTGTCACAACTGCGGCGATTTGGTGCCGGCTTTGTCTTTGCTTCCCTTGC
CATGATCGCTGCGGGCCTGCTCGAGATCTACCGCAAGAGCCAAGCTCCCT
CCGAGACTTCATATCCGACCAACAGCACTGATACGAACACCATCTTATTC
CTAGAACAACACATCTCCGCCTGCAAAAACATTGATGACTTCAATCCTTT
TGCATATCAAGCTTGGTTTGCTGCTGGGGGGCGCTCATCCTCCACAACCC
CTCCTGCTGCCTGTGAACAGATCGGACCCTCCTCGTCGGATGGGAGTTTG
CCTCTCTCCTCTATCCTGTGTCAAAATGTCCCGCTTGTTTCCCCTGTGAG
CGTTTTTTGGCAAGTGCCTCAATTTGTCTTGATTGGGATTTCAGAGATCT
TGACGAGTATTACCTCGTACGCATTTTTCTATGCGCAAGCCCCCCCGAAC
ATGCGGAGTTTTGCCGCGTCTCTTAATTTGTTGACCACGGCGCTTGGCAC
GTGGTTGTGTATACCGCTTGTTGCTTTAGCTAATTCTGGAGACGTAGAGT
GGGTACCCAGTGATGTAAATAAAGGACATTTGGCAGGGTTTTTCTTTCTG
TTGGCGGGCATTATGCTTTCTATGACGGCTGGGTTTATGGTACAAGCGAA
GAGGTACCAGCCCACGGTGCTGATGTCCGTGGATGGGAGTGGCGAATTTA
ATTCCACCGTGGAACTGGAGGAATGA back to topprotein sequence of NO19G01670.1 >NO19G01670.1-protein ID=NO19G01670.1-protein|Name=NO19G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=692bp
MDDEQTQVPLLLGEPVSDDGDDENAREAHEAITAVAGMMDTPHKPQFLQS
QILWRVCSFIVVTEFCERLSYYGVGGSLVLLFQSHLNYTNAQADNAYAIW
SGLCYCAPLVGGWLADSYLGRFKTIGVFSGIYLVGLLVLIIGVLPRNPTD
PIGGGAATRTTTEALVYIGIYTLALGDGGIKPNVSTFGADQFSQSAEGKR
AMESFFNSFYAAINCGALISFTLIVSITQYGLPWLGGTDYRFAVGFSIAA
LFTAGGIGIFWSGRRRYKMMPPTGSVLATSMAILFQAAGKSLRAWRVRQD
WIVSAGAAAAAGEEGNGSTCGSSSGDSGSCSSHLPVIAPSGDDSASSSWL
DQAKRSHGGSFAAVDVEGVKCVCRLLPFLFFLIPYWTCYTQMSTSFQNQG
CQMDLSLKPLLPSTKIAVSTLNLFDTLGIILLVPFFDRIVYPFFRRHGHP
LSQLRRFGAGFVFASLAMIAAGLLEIYRKSQAPSETSYPTNSTDTNTILF
LEQHISACKNIDDFNPFAYQAWFAAGGRSSSTTPPAACEQIGPSSSDGSL
PLSSILCQNVPLVSPVSVFWQVPQFVLIGISEILTSITSYAFFYAQAPPN
MRSFAASLNLLTTALGTWLCIPLVALANSGDVEWVPSDVNKGHLAGFFFL
LAGIMLSMTAGFMVQAKRYQPTVLMSVDGSGEFNSTVELEE* back to topmRNA from alignment at chr19:504093..506350- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01670.1 ID=NO19G01670.1|Name=NO19G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr19:504093..506350- (Nannochloropsis oceanica)
ATGGACGACGAACAAACGCAAGTGCCTTTGCTGCTTGGCGAGCCCGTCTC
GGACGACGGGGACGACGAGAATGCACGCGAAGCACACGAGGCAATAACCG
CAGTCGCTGGGATGATGGACACACCACACAAGCCCCAATTTCTCCAGTCT
CAAATCTTGTGGCGGGTCTGTAGCTTCATCGTTGTCACCGAGTTCTGTGA
GCGCTTGAGCTACTACGGCGTTGGCGGCTCCTTGGTCTTACTTTTCCAGT
CTCACCTAAATTATACCAACGCCCAGGCCGATAACGCGTATGCCATTTGG
TCAGGTTTATGTTATTGTGCCCCCTTGGTAGGCGGATGGCTAGCCGACTC
TTACTTGGGACGATTCAAAACGATTGGCGTTTTCAGCGGTATTTACTTGG
TTGGTCTGCTAGTCTTGATCATCGGTGTCTTGCCCCGCAACCCAACGGAT
CCAATCGGCGGGGGGGCAGCCACCCGTACCACTACTGAAGCCCTTGTGTA
CATTGGGATTTACACGCTGGCTTTAGGGGATGGTGGGATCAAGCCCAATG
TGTCCACCTTTGGGGCTGATCAGTTTTCGCAATCAGCGGAAGGCAAACGG
GCCATGGAGTCGTTTTTTAATTCATTTTATGCGGCGATTAATTGTGGAGC
ACTGATAAGTTTCACGCTTATTGTAAGCATAACGCAGTATGGCCTTCCTT
GGCTGGGTGGGACAGACTATAGATTCGCTGTAGGTTTCAGTATCGCGGCG
CTTTTCACTGCTGGTGGTATTGGTATTTTTTGGTCCGGGCGACGACGATA
TAAAATGATGCCGCCGACGGGGAGCGTCTTGGCAACGTCAATGGCAATCT
TGTTCCAAGCCGCAGGGAAGAGTCTGCGGGCCTGGAGGGTGCGACAAGAC
TGGATTGTTTCAGCAGGAGCAGCAGCAGCCGCAGGTGAGGAAGGAAATGG
GAGCACTTGTGGTAGCAGCAGCGGTGATAGTGGCAGCTGTAGCAGCCATC
TGCCTGTTATTGCTCCTAGTGGAGATGATTCGGCATCTTCATCGTGGTTG
GATCAAGCGAAGCGATCACATGGCGGTTCTTTTGCTGCAGTGGACGTAGA
GGGCGTGAAATGCGTGTGCCGTTTGCTGCCCTTCTTGTTTTTCCTCATTC
CCTATTGGACTTGCTACACCCAGGTAAATTGATTTGGTGACACGGATGAT
GATATGTACATGCGTGGTGTATTAAAGTCGAGAGATAGAAAGCTATGCGC
GTTTGGTATGCATTTCTCGTTTTTCTTTGCATCGTGACCGAATAAACTTC
ACCAAAGAATCTTTCGATCAGATGTCTCCCCCTACAAATAACCAACCCTC
ATCAGATGAGCACGTCCTTCCAAAACCAAGGCTGTCAAATGGACCTTTCA
CTCAAGCCCCTCCTCCCCTCCACTAAAATCGCCGTCTCTACACTCAACCT
CTTTGACACTCTCGGCATCATCCTTCTCGTCCCCTTCTTCGATCGCATCG
TCTATCCCTTCTTCCGACGCCACGGACATCCTCTGTCACAACTGCGGCGA
TTTGGTGCCGGCTTTGTCTTTGCTTCCCTTGCCATGATCGCTGCGGGCCT
GCTCGAGATCTACCGCAAGAGCCAAGCTCCCTCCGAGACTTCATATCCGA
CCAACAGCACTGATACGAACACCATCTTATTCCTAGAACAACACATCTCC
GCCTGCAAAAACATTGATGACTTCAATCCTTTTGCATATCAAGCTTGGTT
TGCTGCTGGGGGGCGCTCATCCTCCACAACCCCTCCTGCTGCCTGTGAAC
AGATCGGACCCTCCTCGTCGGATGGGAGTTTGCCTCTCTCCTCTATCCTG
TGTCAAAATGTCCCGCTTGTTTCCCCTGTGAGCGTTTTTTGGCAAGTGCC
TCAATTTGTCTTGATTGGGATTTCAGAGATCTTGACGAGTATTACCTCGT
ACGCATTTTTCTATGCGCAAGCCCCCCCGAACATGCGGAGTTTTGCCGCG
TCTCTTAATTTGTTGACCACGGCGCTTGGCACGTGGTTGTGTATACCGCT
TGTTGCTTTAGCTAATTCTGGAGACGTAGAGTGGGTACCCAGTGATGTAA
ATAAAGGACATTTGGCAGGGTTTTTCTTTCTGTTGGCGGGCATTATGCTT
TCTATGACGGCTGGGTTTATGGTACAAGCGAAGAGGTACCAGCCCACGGT
GCTGATGTCCGTGGATGGGAGTGGCGAATTTAATTCCACCGTGGAACTGG
AGGAATGA back to topCoding sequence (CDS) from alignment at chr19:504093..506350- >NO19G01670.1 ID=NO19G01670.1|Name=NO19G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=2076bp|location=Sequence derived from alignment at chr19:504093..506350- (Nannochloropsis oceanica)
ATGGACGACGAACAAACGCAAGTGCCTTTGCTGCTTGGCGAGCCCGTCTC
GGACGACGGGGACGACGAGAATGCACGCGAAGCACACGAGGCAATAACCG
CAGTCGCTGGGATGATGGACACACCACACAAGCCCCAATTTCTCCAGTCT
CAAATCTTGTGGCGGGTCTGTAGCTTCATCGTTGTCACCGAGTTCTGTGA
GCGCTTGAGCTACTACGGCGTTGGCGGCTCCTTGGTCTTACTTTTCCAGT
CTCACCTAAATTATACCAACGCCCAGGCCGATAACGCGTATGCCATTTGG
TCAGGTTTATGTTATTGTGCCCCCTTGGTAGGCGGATGGCTAGCCGACTC
TTACTTGGGACGATTCAAAACGATTGGCGTTTTCAGCGGTATTTACTTGG
TTGGTCTGCTAGTCTTGATCATCGGTGTCTTGCCCCGCAACCCAACGGAT
CCAATCGGCGGGGGGGCAGCCACCCGTACCACTACTGAAGCCCTTGTGTA
CATTGGGATTTACACGCTGGCTTTAGGGGATGGTGGGATCAAGCCCAATG
TGTCCACCTTTGGGGCTGATCAGTTTTCGCAATCAGCGGAAGGCAAACGG
GCCATGGAGTCGTTTTTTAATTCATTTTATGCGGCGATTAATTGTGGAGC
ACTGATAAGTTTCACGCTTATTGTAAGCATAACGCAGTATGGCCTTCCTT
GGCTGGGTGGGACAGACTATAGATTCGCTGTAGGTTTCAGTATCGCGGCG
CTTTTCACTGCTGGTGGTATTGGTATTTTTTGGTCCGGGCGACGACGATA
TAAAATGATGCCGCCGACGGGGAGCGTCTTGGCAACGTCAATGGCAATCT
TGTTCCAAGCCGCAGGGAAGAGTCTGCGGGCCTGGAGGGTGCGACAAGAC
TGGATTGTTTCAGCAGGAGCAGCAGCAGCCGCAGGTGAGGAAGGAAATGG
GAGCACTTGTGGTAGCAGCAGCGGTGATAGTGGCAGCTGTAGCAGCCATC
TGCCTGTTATTGCTCCTAGTGGAGATGATTCGGCATCTTCATCGTGGTTG
GATCAAGCGAAGCGATCACATGGCGGTTCTTTTGCTGCAGTGGACGTAGA
GGGCGTGAAATGCGTGTGCCGTTTGCTGCCCTTCTTGTTTTTCCTCATTC
CCTATTGGACTTGCTACACCCAGATGAGCACGTCCTTCCAAAACCAAGGC
TGTCAAATGGACCTTTCACTCAAGCCCCTCCTCCCCTCCACTAAAATCGC
CGTCTCTACACTCAACCTCTTTGACACTCTCGGCATCATCCTTCTCGTCC
CCTTCTTCGATCGCATCGTCTATCCCTTCTTCCGACGCCACGGACATCCT
CTGTCACAACTGCGGCGATTTGGTGCCGGCTTTGTCTTTGCTTCCCTTGC
CATGATCGCTGCGGGCCTGCTCGAGATCTACCGCAAGAGCCAAGCTCCCT
CCGAGACTTCATATCCGACCAACAGCACTGATACGAACACCATCTTATTC
CTAGAACAACACATCTCCGCCTGCAAAAACATTGATGACTTCAATCCTTT
TGCATATCAAGCTTGGTTTGCTGCTGGGGGGCGCTCATCCTCCACAACCC
CTCCTGCTGCCTGTGAACAGATCGGACCCTCCTCGTCGGATGGGAGTTTG
CCTCTCTCCTCTATCCTGTGTCAAAATGTCCCGCTTGTTTCCCCTGTGAG
CGTTTTTTGGCAAGTGCCTCAATTTGTCTTGATTGGGATTTCAGAGATCT
TGACGAGTATTACCTCGTACGCATTTTTCTATGCGCAAGCCCCCCCGAAC
ATGCGGAGTTTTGCCGCGTCTCTTAATTTGTTGACCACGGCGCTTGGCAC
GTGGTTGTGTATACCGCTTGTTGCTTTAGCTAATTCTGGAGACGTAGAGT
GGGTACCCAGTGATGTAAATAAAGGACATTTGGCAGGGTTTTTCTTTCTG
TTGGCGGGCATTATGCTTTCTATGACGGCTGGGTTTATGGTACAAGCGAA
GAGGTACCAGCCCACGGTGCTGATGTCCGTGGATGGGAGTGGCGAATTTA
ATTCCACCGTGGAACTGGAGGAATGA back to top
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