NO19G01610.1, NO19G01610.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01610.1
Unique Name	NO19G01610.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2987
Alignment location	chr19:483082..486288 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:483082..486288 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G01610.1 vs.
Match: CBJ28269.1 (Homologue of a Golgi anti-apoptotic protein identified from vaccinia virus. Transmembrane BAX inhi [Ectocarpus siliculosus])

HSP 1 Score: 213.8 bits (543), Expect = 9.500e-52
Identity = 119/247 (48.18%), Postives = 164/247 (66.40%), Query Frame = 0

Query:  136 YSVKPTAVQHDVEAGGFGEQTVSP----FMAKAEKQMRMAFIRKVYTILSCQLLLSALFCAYVTLDGAANAFVLSHQGLYVLGIVASVVVLLLLMCYRSYYPVNLGLLAIWTFCEAYTIGIVTATFARAGEGELVVQALAITFVVFFALTIFTFQAKIDFSFLGGILFASTSVLIIWGIIGAIFGFRPGFIYSLLGAVLFSLYIVFDTYMLMEKLDYSEWLLASISLYLDIINLFIFILQMLVESRR 379
            Y +    + H+V  GG      +       A+ EK +R+ FIRKVY ILS QLLL+A   A   L+      +L +     +G   S+ +LL LMCYR  YP+N+ LL  WTF EAYT+G+V A +A  G+G +VVQA  +T  VF  LT+FTFQ KIDFSFLGG LFAS  VL++WG++ ++FGF+  ++YSL GA++FSLYI++DT +LM  L Y E+++ASISLYLDI+NLF++IL++L    R
Sbjct:   31 YEILEAGLVHNVNPGGGSSAAAAAGGWGSTAEIEKALRLGFIRKVYGILSIQLLLTAAVAAVCVLNDNVRTGILGNLWTVWVGFFFSIGLLLCLMCYRDKYPLNMYLLGAWTFVEAYTVGVVCAAYASQGQGTIVVQAAGLTMAVFLGLTLFTFQTKIDFSFLGGALFASIWVLMLWGVVMSVFGFQQSYLYSLFGAIIFSLYILYDTSLLMNHLGYDEYIVASISLYLDILNLFLYILRLLSRDNR 277

The following BLAST results are available for this feature:

BLAST of NO19G01610.1 vs.

BLAST of NO19G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ28269.1	9.500e-52	48.18	Homologue of a Golgi anti-apoptotic protein identi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G01610	NO19G01610	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01610.1	NO19G01610.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01610.1.cds1	NO19G01610.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01610.1.cds2	NO19G01610.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01610.1.cds3	NO19G01610.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:483082..486288-
coding sequence from alignment at chr19:483082..486288-

mRNA sequence

>NO19G01610.1 ID=NO19G01610.1|Name=NO19G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2987bp
AAAAAATCGTAACGTCTGGTGGAGGTTGCCAGGAGGTTGTCAGCACGCAA
ATCTTCTGGCGCGCGTTTCGTGTGTCGATGCGTGGCATGTGCGCCTGTCA
AATGTTTCTACGGCCGGAAACATAAGTTAATAATTCATAACTGGCGTGAA
TCAGGGATCTAAATGTCTTGTCATGACCTCATAATGGCGTGCAATTGAGG
TACACCGCAGTAAGGCATCATCTAACAGCTCATCTTCATCTTCATCTACC
TCTCCGACAGGCCCGAGACACTTATTTTCCTTCTCTACACATCCAAATTC
GCACAGAATTTGAACCTCAACAAGAACTTTAACATGTCTCACACTGTCAA
GGCCCGCGACAGGCCCGAGGAGCTCGCGGCAGAGATGTACCCTGCACCAA
TCAATCCTGCTGTCATTTATGCTGCTGGCGGGCCCGCGGGCTACCACCAA
GCACCGGTCACGATGCCACAGGCTGTTTATGATATCGGTGGCGGTGATTT
TTATGGGGGCTGCCAAAGGTATTCTGCGACACAACCCGCGTATGCCATGG
CGCACCCCACCTACTCGACGGCGGCCGTGCCGACCTTTATGGGCCAGTCT
GCCACGGTACATGGCGTGGGGGGCCACGTACAGCACTACGGTGGTCTATC
GGATGCCCCCCCATCGCAGTTCCAGCAACAATCGCCGCATTGCCTCCCGC
CGCATCGACCAAATCACGCGGCTGGTGGACGCACGCCATATTCTGTCAAG
CCTACCGCCGTTCAGCACGATGTTGAGGCGGGCGGGTTTGGGGAGCAGAC
GGTTTCGCCTTTTATGGCCAAGGCGGAGAAACAGATGCGTATGGCGTTCA
TTCGCAAGGTCTATACTATTTTGTCATGTCAGCTGCTGTTGAGTGCCTTG
TTCTGCGCATATGTGACGCTTGACGGCGCGGCAAATGCCTTTGTCTTGTC
GCACCAAGGTTTGTACGTGCTGGGAATCGTGGCATCGGTCGTGGTGCTGC
TGTTATTAATGTGCTACCGAAGTTACTACCCAGTCAACTTGGGATTGCTT
GCGATTTGGACGTTCTGTGAGGCGTATACGATTGGTATTGTCACAGCTAC
ATTTGCGCGTGCGGGGGAAGGGGAGCTGGTGGTCCAAGCGTTGGCGATCA
CGTTTGTCGTATTCTTTGCCCTGACCATCTTTACCTTTCAGGCCAAGATT
GACTTTTCGTTCCTTGGTGGTATTCTTTTTGCTTCGACCTCGGTGCTGAT
CATATGGGGAATAATTGGAGCTATCTTTGGATTCCGCCCAGGCTTTATAT
ACAGTTTGCTTGGCGCTGTCCTGTTTTCATTGTACATTGTCTTTGACACC
TACATGCTGATGGAGAAACTGGATTATTCGGAATGGCTGCTTGCTTCCAT
CTCTTTATATCTCGACATAATTAATCTCTTCATCTTCATTCTGCAAATGC
TCGTCGAGAGCCGGAGACGGCAGGAATAACGACAGACCCCTTCTGCCTTC
TCACCCTCCGTCCGTGATTTCGAGAAAAGGTGAATGTGCGTAAACGTTGG
ACGTTGCATGCCTCTTTAATCTTCCAGGTTGGCCTCCCATGTATATGACG
CAACGTCAAGAAAAGGAGGCGAGGGTCCGTTTACAGAGGCATCGAAATGA
ATTACCGCAATGCTGGCTTTAGATCGATAGCCCAAAGACGAACATGTAAA
CCTAATATTTATTCTGCATGATCACAAGAGCTTGATAAAGAGTGGTCCAC
AATTAAAGGACAGCAAGAATAGAAATATAGAGATTAGAACCTCTGAGATG
ACAATCACATGTTTGCATATTTTTCTATGAAAATATCGTCACCTGTTTGT
TTTGGCTTGACTGTCATTATCTACACACACCCTACTATACAGCATTTCTG
AGAGGAAACGTTACTTGTCGACATGCATTCTACATTAAGTATGTGAAATT
AATTTTCAAAATTTATTCTCCATTGTTTCCAATTTCTGCCATCACCTCCT
CACCGTACGCCGCCACGAGCGAAACAGAATGCGCCCTCTCCAGTACGGCA
TGGGCCAGTTCCTCCTGTTTCGCTGACAAGGGTGACGAAGACGGGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGACAACGAGAGGCCTACAA
GCGTGACCATCGCCAGCGGCAACCCAGCTCCAACGGCCGCATCCATAGCT
CTCCGGACCACAGTTTGTATATGCCCTTGCTCACTCCCACCTTTAGCCTT
CCAGTCATTTTTTCCACCACCATTTTTGCCGCCGTCTACTCCAATGTCTC
TCGCACCAACGCCTTGTCCATCCAAAATGAGAAGCATATATGGGTTAGCC
CCGCGGGCCCTTCGTTCGTATCGCAGGTAGTCTTCCAATCTCACTTGGAC
CCTTAAAGGCAACGAGGCAAGCCTCGCCAAATCCACAACGCACACATCGC
ATTTCCCCCTACGTCTTAAGACCGGTCTGACCAGCACACGCGTAATCAAC
GCCCCGCCCCGTGGCATCCAGTACAACAATAGCGCAGACGCACCCAAGCC
CGTGAGCAATCCCAACTCTGTGTCGAACGCTAGAGTGACAAAAAACGTTA
CTAAAGTCACTACAAAATCAATCCTCGACCGTCGATACTCTTGTTTCAAA
CTCTCCAAGTCCAAAAGATTCAAAAGCGCTACTTCAATTATAGCGCCTAG
TGTCGCCCGGGGTAGATAATAAAAGAACTGTGCGAGGAATAACAAAACGA
CCATAACACAGAGAGCGCCCACGGCGTTCGCCAACTGTGTTTGAGTCCCA
GCCGAGTAACTCACAGCAGACCTGGAAAATGAGCCAGACACGGGATAAGA
AGCGAAAAAGGACCCTCCTATGTTAGCAGCGCCCAGTGCAAATAGCTCGC
GATTGACGTTAAGGGGGTACCCTTTTTGCAAGGCGTATTTCTTGGCTATG
GCGTAGGCCTAAAGAAGAGAGGGATGAATAACAGAAC

protein sequence of NO19G01610.1

>NO19G01610.1-protein ID=NO19G01610.1-protein|Name=NO19G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSHTVKARDRPEELAAEMYPAPINPAVIYAAGGPAGYHQAPVTMPQAVYD
IGGGDFYGGCQRYSATQPAYAMAHPTYSTAAVPTFMGQSATVHGVGGHVQ
HYGGLSDAPPSQFQQQSPHCLPPHRPNHAAGGRTPYSVKPTAVQHDVEAG
GFGEQTVSPFMAKAEKQMRMAFIRKVYTILSCQLLLSALFCAYVTLDGAA
NAFVLSHQGLYVLGIVASVVVLLLLMCYRSYYPVNLGLLAIWTFCEAYTI
GIVTATFARAGEGELVVQALAITFVVFFALTIFTFQAKIDFSFLGGILFA
STSVLIIWGIIGAIFGFRPGFIYSLLGAVLFSLYIVFDTYMLMEKLDYSE
WLLASISLYLDIINLFIFILQMLVESRRRQE*

mRNA from alignment at chr19:483082..486288-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G01610.1 ID=NO19G01610.1|Name=NO19G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3207bp|location=Sequence derived from alignment at chr19:483082..486288- (Nannochloropsis oceanica)
AAAAAATCGTAACGTCTGGTGGAGGTTGCCAGGAGGTTGTCAGCACGCAA
ATCTTCTGGCGCGCGTTTCGTGTGTCGATGCGTGGCATGTGCGCCTGTCA
AATGTTTCTACGGCCGGAAACATAAGTTAATAATTCATAACTGGCGTGAA
TCAGGGATCTAAATGTCTTGTCATGACCTCATAATGGCGTGCAATTGAGG
TACACCGCAGTAAGGCATCATCTAACAGCTCATCTTCATCTTCATCTACC
TCTCCGACAGGCCCGAGACACTTATTTTCCTTCTCTACACATCCAAATTC
GCACAGAATTTGAACCTCAACAAGAACTTTAACATGTCTCACACTGTCAA
GGCCCGCGACAGGCCCGAGGAGCTCGCGGCAGAGATGTACCCTGCACCAA
TCAATCCTGCTGTCATTTATGCTGCTGGCGGGCCCGCGGGCTACCACCAA
GCACCGGTCACGATGCCACAGGCTGTTTATGATATCGGTGGCGGTGATTT
TTATGGGGGCTGCCAAAGGTATTCTGCGACACAACCCGCGTATGCCATGG
CGCACCCCACCTACTCGACGGCGGCCGTGCCGACCTTTATGGGCCAGTCT
GCCACGGTACATGGCGTGGGGGGCCACGTACAGCACTACGGTGGTCTATC
GGATGCCCCCCCATCGCAGTTCCAGCAACAATCGCCGCATTGCCTCCCGC
CGCATCGACCAAATCACGCGGCTGGTGGACGCACGCCATATTCTGTCAAG
CCTACCGCCGTTCAGCACGATGTTGAGGCGGGCGGGTTTGGGGAGCAGAC
GGTTTCGCCTTTTATGGCCAAGGCGGAGAAACAGATGCGTATGGCGTTCA
TTCGCAAGGTCTATACTATTTTGTCATGTCAGCTGCTGTTGAGTGCCTTG
TTCTGCGCATATGTGACGCTTGACGGCGCGGCAAATGCCTTTGTCTTGTC
GCACCAAGGTTTGTACGTGCTGGGAATCGTGGCATCGGTCGTGGTGCTGC
TGTTATTAATGTGCTACCGAAGTTACTACCCAGTCAACTTGGGATTGCTT
GCGATTTGGACGTTCTGTGAGGCGTATACGATTGGTATTGTCACAGCTAC
ATTTGCGCGTGCGGGGGAAGGGGAGCTGGTGGTCCAAGCGTTGGCGATCA
CGTTTGTCGTATTCTTTGCCCTGACCATCTTTACCTTTCAGGCCAAGATT
GACTTTTCGTTCCTTGGTGGTATTCTTTTTGCTTCGACCTCGGTGCTGAT
CATATGGGGAATAATTGGAGCTATCTTTGGATTCCGCCCAGGTGCGTCAA
GGAATGAGACTGAAGATGTGTCCAATGCCCTGCCTCTCGTCTCTAGTCAT
GCTCATTCTCAATCCCATCCACACAGGCTTTATATACAGTTTGCTTGGCG
CTGTCCTGTTTTCATTGTACATTGTCTTTGACACCTACATGCTGATGGAG
AAACTGGATTATTCGGAATGGCTGCTTGCTTCCATCTCTTTATATCTCGT
GAGTTTTTGTGTGCGCCTTATCCCTGGGTTGATGTGGGTGCTAACGTTAC
CTAGCGAATGTGTTTGATCTTACCTCGCGCTGCCACTCATGGAATCTTTC
TCTTATGTCTCTGTCTGCTTTGAAACAAAATAGGACATAATTAATCTCTT
CATCTTCATTCTGCAAATGCTCGTCGAGAGCCGGAGACGGCAGGAATAAC
GACAGACCCCTTCTGCCTTCTCACCCTCCGTCCGTGATTTCGAGAAAAGG
TGAATGTGCGTAAACGTTGGACGTTGCATGCCTCTTTAATCTTCCAGGTT
GGCCTCCCATGTATATGACGCAACGTCAAGAAAAGGAGGCGAGGGTCCGT
TTACAGAGGCATCGAAATGAATTACCGCAATGCTGGCTTTAGATCGATAG
CCCAAAGACGAACATGTAAACCTAATATTTATTCTGCATGATCACAAGAG
CTTGATAAAGAGTGGTCCACAATTAAAGGACAGCAAGAATAGAAATATAG
AGATTAGAACCTCTGAGATGACAATCACATGTTTGCATATTTTTCTATGA
AAATATCGTCACCTGTTTGTTTTGGCTTGACTGTCATTATCTACACACAC
CCTACTATACAGCATTTCTGAGAGGAAACGTTACTTGTCGACATGCATTC
TACATTAAGTATGTGAAATTAATTTTCAAAATTTATTCTCCATTGTTTCC
AATTTCTGCCATCACCTCCTCACCGTACGCCGCCACGAGCGAAACAGAAT
GCGCCCTCTCCAGTACGGCATGGGCCAGTTCCTCCTGTTTCGCTGACAAG
GGTGACGAAGACGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGACAACGAGAGGCCTACAAGCGTGACCATCGCCAGCGGCAACCCAGCTC
CAACGGCCGCATCCATAGCTCTCCGGACCACAGTTTGTATATGCCCTTGC
TCACTCCCACCTTTAGCCTTCCAGTCATTTTTTCCACCACCATTTTTGCC
GCCGTCTACTCCAATGTCTCTCGCACCAACGCCTTGTCCATCCAAAATGA
GAAGCATATATGGGTTAGCCCCGCGGGCCCTTCGTTCGTATCGCAGGTAG
TCTTCCAATCTCACTTGGACCCTTAAAGGCAACGAGGCAAGCCTCGCCAA
ATCCACAACGCACACATCGCATTTCCCCCTACGTCTTAAGACCGGTCTGA
CCAGCACACGCGTAATCAACGCCCCGCCCCGTGGCATCCAGTACAACAAT
AGCGCAGACGCACCCAAGCCCGTGAGCAATCCCAACTCTGTGTCGAACGC
TAGAGTGACAAAAAACGTTACTAAAGTCACTACAAAATCAATCCTCGACC
GTCGATACTCTTGTTTCAAACTCTCCAAGTCCAAAAGATTCAAAAGCGCT
ACTTCAATTATAGCGCCTAGTGTCGCCCGGGGTAGATAATAAAAGAACTG
TGCGAGGAATAACAAAACGACCATAACACAGAGAGCGCCCACGGCGTTCG
CCAACTGTGTTTGAGTCCCAGCCGAGTAACTCACAGCAGACCTGGAAAAT
GAGCCAGACACGGGATAAGAAGCGAAAAAGGACCCTCCTATGTTAGCAGC
GCCCAGTGCAAATAGCTCGCGATTGACGTTAAGGGGGTACCCTTTTTGCA
AGGCGTATTTCTTGGCTATGGCGTAGGCCTAAAGAAGAGAGGGATGAATA
ACAGAAC

Coding sequence (CDS) from alignment at chr19:483082..486288-

>NO19G01610.1 ID=NO19G01610.1|Name=NO19G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr19:483082..486288- (Nannochloropsis oceanica)
ATGTCTCACACTGTCAAGGCCCGCGACAGGCCCGAGGAGCTCGCGGCAGA
GATGTACCCTGCACCAATCAATCCTGCTGTCATTTATGCTGCTGGCGGGC
CCGCGGGCTACCACCAAGCACCGGTCACGATGCCACAGGCTGTTTATGAT
ATCGGTGGCGGTGATTTTTATGGGGGCTGCCAAAGGTATTCTGCGACACA
ACCCGCGTATGCCATGGCGCACCCCACCTACTCGACGGCGGCCGTGCCGA
CCTTTATGGGCCAGTCTGCCACGGTACATGGCGTGGGGGGCCACGTACAG
CACTACGGTGGTCTATCGGATGCCCCCCCATCGCAGTTCCAGCAACAATC
GCCGCATTGCCTCCCGCCGCATCGACCAAATCACGCGGCTGGTGGACGCA
CGCCATATTCTGTCAAGCCTACCGCCGTTCAGCACGATGTTGAGGCGGGC
GGGTTTGGGGAGCAGACGGTTTCGCCTTTTATGGCCAAGGCGGAGAAACA
GATGCGTATGGCGTTCATTCGCAAGGTCTATACTATTTTGTCATGTCAGC
TGCTGTTGAGTGCCTTGTTCTGCGCATATGTGACGCTTGACGGCGCGGCA
AATGCCTTTGTCTTGTCGCACCAAGGTTTGTACGTGCTGGGAATCGTGGC
ATCGGTCGTGGTGCTGCTGTTATTAATGTGCTACCGAAGTTACTACCCAG
TCAACTTGGGATTGCTTGCGATTTGGACGTTCTGTGAGGCGTATACGATT
GGTATTGTCACAGCTACATTTGCGCGTGCGGGGGAAGGGGAGCTGGTGGT
CCAAGCGTTGGCGATCACGTTTGTCGTATTCTTTGCCCTGACCATCTTTA
CCTTTCAGGCCAAGATTGACTTTTCGTTCCTTGGTGGTATTCTTTTTGCT
TCGACCTCGGTGCTGATCATATGGGGAATAATTGGAGCTATCTTTGGATT
CCGCCCAGGCTTTATATACAGTTTGCTTGGCGCTGTCCTGTTTTCATTGT
ACATTGTCTTTGACACCTACATGCTGATGGAGAAACTGGATTATTCGGAA
TGGCTGCTTGCTTCCATCTCTTTATATCTCGACATAATTAATCTCTTCAT
CTTCATTCTGCAAATGCTCGTCGAGAGCCGGAGACGGCAGGAATAA

Synonyms

Publications