NO19G01490.1, NO19G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01490.1
Unique NameNO19G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1407
Alignment locationchr19:453439..454906 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:453439..454906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01490.1 vs.
Match: EWM23624.1 (hypothetical protein Naga_100137g18 [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 3.100e-53
Identity = 132/292 (45.21%), Postives = 181/292 (61.99%), Query Frame = 0 
Query:   15 LLLTFIVAMPHTTTTSGDDDPLLVALKEELARHDLNLPTGGGLPLAEGTIRLSSTLAPSYDRNGTDAVPAGCLTQLSKTCFGQCLAQLKINQLSFLLNISSVVAPIPMSPSVPVRSNTKKRCDCPRGLGVYLAAYNSAIWTFPGTTPPRTFNVTMGSNSMLVVRHLKSKGERFNCSYTFEVASGVVMGLRAKDDQYQNDGGGSIFPVWATILVTIAGVLCLSGIAFIIIRRGAARQSATAACSSKKYHNHSQQHTRQSYGKWEKAKKVRIAGKTSLRDPLLEL---GDEEDG 304
            LL+T  + +  ++     D  +L   + + +R +++ P  G +P+ EG +RL+  L    D NGTD+    C+ QL+KTCFG C+  L+I+QL  L N++S+ A  P+SP VP  S T   CDCPRGLGVYLAA  SA WTFPG  PPR+FNV+M  +  L+VRH ++ GER  C+YTF+VASGVVMGL A D   +     S FPVWATIL+ +AGV  LS +AF ++RR   +Q A ++   ++ H H    +RQ +G  E+ KKVRI G T   D LLE    G +E G
Sbjct:   36 LLVTMCIGLRDSSQIIDYDAVVLTTDRAQHSRPEVSFP--GDVPVVEGVVRLA--LPAGLDGNGTDSAST-CVAQLNKTCFGLCMQTLRIDQLGPLQNLTSL-AVNPVSPRVPRPSATPNPCDCPRGLGVYLAANRSARWTFPGAMPPRSFNVSMSPDGTLLVRHAQTLGERRKCTYTFQVASGVVMGLEAGDGTKKPKKRSS-FPVWATILIAVAGVFSLSALAFAVLRR--LQQPAPSSSPKERQHRH---RSRQRHGGKEERKKVRING-TGPADSLLEAVEEGQDESG 314
The following BLAST results are available for this feature:
BLAST of NO19G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23624.13.100e-5345.21hypothetical protein Naga_100137g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01490NO19G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01490.1NO19G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01490.1.cds1NO19G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01490.1.cds2NO19G01490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01490.1 ID=NO19G01490.1|Name=NO19G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
GAAAACCACACAGGCATATCACCAAGGCAAGGGATGAGGCCGTTGTCTCT
TCTGCTCCCGCTGCTGCTGGCTTTCCTTCTTCTGACCTTCATTGTGGCAA
TGCCACATACCACCACCACCAGCGGCGATGACGACCCTCTCTTGGTGGCG
CTGAAGGAGGAGCTTGCGCGGCACGACCTGAATCTTCCCACCGGGGGCGG
GCTCCCCCTAGCAGAAGGCACCATCCGCTTGTCAAGCACGCTGGCTCCGA
GCTATGACCGCAACGGAACGGACGCGGTTCCTGCCGGCTGTCTCACACAG
CTGAGTAAGACGTGCTTCGGGCAGTGTCTTGCGCAGCTGAAGATCAATCA
ACTTAGTTTTTTGTTGAACATCTCCTCTGTCGTCGCCCCCATCCCAATGT
CGCCATCCGTCCCTGTTCGTTCGAACACAAAGAAACGTTGTGACTGTCCC
CGTGGTCTAGGCGTCTACCTTGCCGCATATAACTCGGCTATCTGGACCTT
CCCAGGAACGACACCTCCACGAACCTTCAATGTCACAATGGGATCCAATA
GCATGTTGGTAGTGCGTCATTTGAAGTCAAAAGGAGAGCGATTCAACTGC
TCCTACACCTTCGAGGTAGCCTCGGGGGTCGTCATGGGCTTGCGCGCGAA
GGACGACCAATACCAAAATGATGGGGGTGGGTCGATTTTCCCTGTGTGGG
CCACAATACTTGTCACTATTGCAGGCGTTTTGTGCCTCAGTGGAATCGCC
TTCATCATCATCCGCCGTGGGGCAGCACGACAAAGCGCTACAGCAGCTTG
CTCGAGCAAGAAATACCATAACCACTCGCAGCAACACACTCGACAGAGCT
ATGGAAAGTGGGAAAAGGCGAAGAAGGTGCGAATCGCGGGGAAAACATCG
TTGAGGGATCCGTTGCTGGAGTTGGGCGACGAGGAGGATGGGATATGTAG
TACGCCTTGATCAGACTCGACGGAGGGGAGGCGCTGAAAGGGTATAAATG
TGAGAGTGAGGGAGAGGATGAAGAGGGGAAGCAGGAGCGGCAACGGTGAA
ATGGCACAAATCGAGAGCAAGGGTAACTATAAGTTAGACAAAGACAAGGG
AAGTAAAGAAGGGGAGACAAGCGCATAAGAGTACATAAGAAACTGACTCA
TACGAAAATTACAAGATTGAAGAGGAGGGTTTAAAGATATCTGATATCCG
GGCGCTAGCAAGGCAAGCGAAAGATATTTGTCGTTATTCTTGCAGGTCGG
TGGGTTTGATTGAGAGAGAAAATTGTGTGTGTGTGGTGTGTGTTTATATA
TACGTGTGTATGTATGTGGAGTCAGAGGTTTGGGTATGTACAATTTTACA
TACGATCAAAACCAAGCACTGGTGATCAAAAGAAGAAGAAAACACCAGAG
ACGAGGA
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protein sequence of NO19G01490.1

>NO19G01490.1-protein ID=NO19G01490.1-protein|Name=NO19G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MRPLSLLLPLLLAFLLLTFIVAMPHTTTTSGDDDPLLVALKEELARHDLN
LPTGGGLPLAEGTIRLSSTLAPSYDRNGTDAVPAGCLTQLSKTCFGQCLA
QLKINQLSFLLNISSVVAPIPMSPSVPVRSNTKKRCDCPRGLGVYLAAYN
SAIWTFPGTTPPRTFNVTMGSNSMLVVRHLKSKGERFNCSYTFEVASGVV
MGLRAKDDQYQNDGGGSIFPVWATILVTIAGVLCLSGIAFIIIRRGAARQ
SATAACSSKKYHNHSQQHTRQSYGKWEKAKKVRIAGKTSLRDPLLELGDE
EDGICSTP*
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mRNA from alignment at chr19:453439..454906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01490.1 ID=NO19G01490.1|Name=NO19G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at chr19:453439..454906+ (Nannochloropsis oceanica)
GAAAACCACACAGGCATATCACCAAGGCAAGGGATGAGGCCGTTGTCTCT
TCTGCTCCCGCTGCTGCTGGCTTTCCTTCTTCTGGTAAGTCTTTAGCTCC
TCCCCCTTCACGCTCCTTGCTCAAATCTACATTATACTACACCAGACCTT
CATTGTGGCAATGCCACATACCACCACCACCAGCGGCGATGACGACCCTC
TCTTGGTGGCGCTGAAGGAGGAGCTTGCGCGGCACGACCTGAATCTTCCC
ACCGGGGGCGGGCTCCCCCTAGCAGAAGGCACCATCCGCTTGTCAAGCAC
GCTGGCTCCGAGCTATGACCGCAACGGAACGGACGCGGTTCCTGCCGGCT
GTCTCACACAGCTGAGTAAGACGTGCTTCGGGCAGTGTCTTGCGCAGCTG
AAGATCAATCAACTTAGTTTTTTGTTGAACATCTCCTCTGTCGTCGCCCC
CATCCCAATGTCGCCATCCGTCCCTGTTCGTTCGAACACAAAGAAACGTT
GTGACTGTCCCCGTGGTCTAGGCGTCTACCTTGCCGCATATAACTCGGCT
ATCTGGACCTTCCCAGGAACGACACCTCCACGAACCTTCAATGTCACAAT
GGGATCCAATAGCATGTTGGTAGTGCGTCATTTGAAGTCAAAAGGAGAGC
GATTCAACTGCTCCTACACCTTCGAGGTAGCCTCGGGGGTCGTCATGGGC
TTGCGCGCGAAGGACGACCAATACCAAAATGATGGGGGTGGGTCGATTTT
CCCTGTGTGGGCCACAATACTTGTCACTATTGCAGGCGTTTTGTGCCTCA
GTGGAATCGCCTTCATCATCATCCGCCGTGGGGCAGCACGACAAAGCGCT
ACAGCAGCTTGCTCGAGCAAGAAATACCATAACCACTCGCAGCAACACAC
TCGACAGAGCTATGGAAAGTGGGAAAAGGCGAAGAAGGTGCGAATCGCGG
GGAAAACATCGTTGAGGGATCCGTTGCTGGAGTTGGGCGACGAGGAGGAT
GGGATATGTAGTACGCCTTGATCAGACTCGACGGAGGGGAGGCGCTGAAA
GGGTATAAATGTGAGAGTGAGGGAGAGGATGAAGAGGGGAAGCAGGAGCG
GCAACGGTGAAATGGCACAAATCGAGAGCAAGGGTAACTATAAGTTAGAC
AAAGACAAGGGAAGTAAAGAAGGGGAGACAAGCGCATAAGAGTACATAAG
AAACTGACTCATACGAAAATTACAAGATTGAAGAGGAGGGTTTAAAGATA
TCTGATATCCGGGCGCTAGCAAGGCAAGCGAAAGATATTTGTCGTTATTC
TTGCAGGTCGGTGGGTTTGATTGAGAGAGAAAATTGTGTGTGTGTGGTGT
GTGTTTATATATACGTGTGTATGTATGTGGAGTCAGAGGTTTGGGTATGT
ACAATTTTACATACGATCAAAACCAAGCACTGGTGATCAAAAGAAGAAGA
AAACACCAGAGACGAGGA
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Coding sequence (CDS) from alignment at chr19:453439..454906+

>NO19G01490.1 ID=NO19G01490.1|Name=NO19G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr19:453439..454906+ (Nannochloropsis oceanica)
ATGAGGCCGTTGTCTCTTCTGCTCCCGCTGCTGCTGGCTTTCCTTCTTCT
GACCTTCATTGTGGCAATGCCACATACCACCACCACCAGCGGCGATGACG
ACCCTCTCTTGGTGGCGCTGAAGGAGGAGCTTGCGCGGCACGACCTGAAT
CTTCCCACCGGGGGCGGGCTCCCCCTAGCAGAAGGCACCATCCGCTTGTC
AAGCACGCTGGCTCCGAGCTATGACCGCAACGGAACGGACGCGGTTCCTG
CCGGCTGTCTCACACAGCTGAGTAAGACGTGCTTCGGGCAGTGTCTTGCG
CAGCTGAAGATCAATCAACTTAGTTTTTTGTTGAACATCTCCTCTGTCGT
CGCCCCCATCCCAATGTCGCCATCCGTCCCTGTTCGTTCGAACACAAAGA
AACGTTGTGACTGTCCCCGTGGTCTAGGCGTCTACCTTGCCGCATATAAC
TCGGCTATCTGGACCTTCCCAGGAACGACACCTCCACGAACCTTCAATGT
CACAATGGGATCCAATAGCATGTTGGTAGTGCGTCATTTGAAGTCAAAAG
GAGAGCGATTCAACTGCTCCTACACCTTCGAGGTAGCCTCGGGGGTCGTC
ATGGGCTTGCGCGCGAAGGACGACCAATACCAAAATGATGGGGGTGGGTC
GATTTTCCCTGTGTGGGCCACAATACTTGTCACTATTGCAGGCGTTTTGT
GCCTCAGTGGAATCGCCTTCATCATCATCCGCCGTGGGGCAGCACGACAA
AGCGCTACAGCAGCTTGCTCGAGCAAGAAATACCATAACCACTCGCAGCA
ACACACTCGACAGAGCTATGGAAAGTGGGAAAAGGCGAAGAAGGTGCGAA
TCGCGGGGAAAACATCGTTGAGGGATCCGTTGCTGGAGTTGGGCGACGAG
GAGGATGGGATATGTAGTACGCCTTGA
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Synonyms
Publications