NO19G01390.1, NO19G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01390.1
Unique NameNO19G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2184
Alignment locationchr19:427385..430597 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:427385..430597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G01390.1 vs.
Match: EWM23634.1 (cell division cycle 2 [Nannochloropsis gaditana])

HSP 1 Score: 592.4 bits (1526), Expect = 7.700e-166
Identity = 283/300 (94.33%), Postives = 291/300 (97.00%), Query Frame = 0 
Query:    1 MDRYQKIEKNGGGNLGEGTYGVVYKARDKQTNDIVALKRIRLEMEDEGIPSTALREISLLQELRHPCIVELLDCVQSEGRLYLVFEFVDRDLKKYMEAQSGQLARSVVKSFLFQIFHGLAFCHARGIMHRDLKPQNLLVSKEGRLKIADFGLARAFVPPIRPLTHEVVTLWYRPPEILLGSQTYAPPVDVWACGVIFVEMLCKRAMFQGDSEIDQLFKIFRSCGTPSEECWPGVTALQDWNPSFPIWPAVKLTKYCPTIDEAGLDLLEKLVVLDPKGRISAKAALYHRYFEDLDKQQFRQ 301
            M+RYQKIEKNGGGNLGEGTYGVVYKARDKQTNDIVALKRIRLEMEDEGIPSTALREISLLQELRHPCIVELLDCVQSEGRLYLVFEFVDRDLKKYMEAQ G L+R VVKSFLFQIFHGLAFCHARGIMHRDLKPQNLLVSKEGRLKIADFGLARAFVPPIRPLTHEVVTLWYRPPEILLGSQTYAPPVDVWACG IFVE+LCKRAMFQGDSE+DQLFKIFRS GTPSEE WPGVTALQDWNP+FP+WP VKLTKYCP+IDEAGLDLLEKLVVLDPK RISAK ALYHRYF+DLDKQQFRQ
Sbjct:    1 MERYQKIEKNGGGNLGEGTYGVVYKARDKQTNDIVALKRIRLEMEDEGIPSTALREISLLQELRHPCIVELLDCVQSEGRLYLVFEFVDRDLKKYMEAQPGTLSRGVVKSFLFQIFHGLAFCHARGIMHRDLKPQNLLVSKEGRLKIADFGLARAFVPPIRPLTHEVVTLWYRPPEILLGSQTYAPPVDVWACGAIFVELLCKRAMFQGDSEVDQLFKIFRSLGTPSEETWPGVTALQDWNPAFPVWPPVKLTKYCPSIDEAGLDLLEKLVVLDPKSRISAKTALYHRYFDDLDKQQFRQ 300
The following BLAST results are available for this feature:
BLAST of NO19G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23634.17.700e-16694.33cell division cycle 2 [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01390NO19G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01390.1NO19G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01390.1.cds1NO19G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01390.1.cds2NO19G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01390.1.cds3NO19G01390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01390.1.cds4NO19G01390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01390.1.cds5NO19G01390.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01390.1.cds6NO19G01390.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01390.1 ID=NO19G01390.1|Name=NO19G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp
AACCCTGCCCTATCCCTTCGCTTGCATCGCCCAAACACTCAAGTGGACCA
CTGTTCGCGACAGCCACAACAAATACCCATGCATCCAAACGCAAACTTGA
CGAGCCTTGGCAAATCGGTAGTGACTGTGTCCAGGAAAAAGACGCCTGGA
GCTTGGACTGGTCGAAATGTACGGCCGGCATGTTTTCCTTGCTCTGCCTC
GTCCCACCTTCTCAGGTTTATATAGGTTACCATTACGACCAAGCGAGCTG
TGGGTTATGGAAGACAATGGACGTTTGCGGTGTGAGGACCCATACAATGT
AGATGTGATAAGTATGGATCTCCTTGGCTGTGGAGAGGGCCGGAAGGGAC
ATCTGGACTTGCACCTGCTTGCACGGGCCAAGCGAAGTCACACAGAATTA
AGGAGAGGGTCGTTTTCGACACCCCCGTCTCACGCACACTTTCATACACG
CTCACACTGACCCGCGCAATCACACATTTACAAATATGTGACAGAGACGT
GTCCCGGATACAGCGGTAGGGCACGGACGGACAGCCAATGGACAGATATC
AAAAGATTGAGAAAAATGGGGGCGGAAATCTGGGAGAGGGGACGTACGGT
GTGGTGTACAAGGCTCGGGACAAGCAGACCAACGACATCGTCGCCCTCAA
GAGGATTCGTCTAGAGATGGAGGATGAAGGTATCCCCAGCACAGCGTTGC
GGGAGATTTCCTTGCTACAAGAGCTGAGGCACCCCTGCATTGTTGAACTA
CTGGACTGTGTCCAAAGCGAAGGCCGGCTATACCTCGTCTTCGAGTTCGT
CGACCGAGACCTGAAAAAATACATGGAGGCCCAGTCGGGGCAACTCGCCC
GCAGTGTCGTCAAGTCCTTCCTCTTCCAAATTTTCCACGGCCTCGCCTTT
TGCCATGCCAGGGGAATTATGCACCGAGACCTTAAGCCACAAAATCTGTT
GGTCTCCAAAGAAGGGAGGTTGAAAATTGCTGATTTCGGCCTGGCCCGTG
CCTTCGTCCCTCCGATTCGGCCCTTGACGCACGAGGTGGTGACGTTGTGG
TATCGCCCCCCCGAGATTTTGTTGGGCTCCCAGACGTACGCCCCTCCCGT
GGACGTGTGGGCGTGCGGCGTGATCTTTGTGGAAATGCTCTGTAAGCGCG
CCATGTTCCAAGGCGACTCCGAGATTGATCAGCTCTTCAAGATTTTCCGC
TCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAGGCGTAACGGCACTCCA
GGACTGGAACCCGTCTTTTCCCATCTGGCCCGCCGTGAAGCTAACAAAGT
ACTGCCCGACCATCGACGAGGCGGGGCTAGATTTGTTGGAGAAACTGGTC
GTGCTGGATCCCAAGGGGCGGATAAGCGCCAAGGCCGCCCTCTACCACCG
GTACTTCGAGGACCTTGACAAACAGCAGTTCAGGCAATAAGGGAATGAGG
GAAGCAGGGAGGGACGAGGGAGGGACGGAGGAATCTTGCTAGTTGTTTTA
GTGTAGGTATTTTCTATGTGCTCGTAAGGCCCGAGGCGGTTGTGCGCTTC
GGTGGGGCACGACGTGTGAAATAAAGCGAGTGAAAGAGAGATGGAGTGAG
AGAAGAATTGAAGGAGAGGAGAGGGAGGGGGAGTGGGCAATAGAGGGAGG
GAGGAGTTATGGGATCGAGTAGAGTGTGCTATGCTTGGGTGCCTACACGA
TGACCAAAAATGACGACCTCCTACAAGAGAGAGGATTGTGCCACAGTAAG
AGGGAGAATAAGAGGAAGGCACGGTGACGCGCGAGAGAAGTATGAAGGCA
AACGAACGAAAAGAAGTGCGCGATAGAAGGAAGAAGAAGGAGGGAGAGAG
TGTGTATGTGACGTAAAACGTGAGACAAAAGAGCAACGTGACAAAAGGGG
GGAAATGACGACGGAGAAAGAAGGATAGTGAAAGATGACGAGGGAGGGAG
GGAAGAAGACAGGGGAGGAAGAAAGTGTAGTCACACACAAGGGGTCCACA
GGCGGCCGCTCGCCATTTGCGCTGCATGTGCCTCCATGCGATGCTGTGGA
GAAAGGTGGGGGGGAAGAGAGTGTGAGCCTAACCCTAAACGGAAACATGA
GCGCGACCACACCGCCCCAATGGAAAGAGGTCCAAGAAGAAAGATGTGAG
GAAAGAAAATGGCGTAGCATGGAACTTGAGCTAA
back to top

protein sequence of NO19G01390.1

>NO19G01390.1-protein ID=NO19G01390.1-protein|Name=NO19G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MDRYQKIEKNGGGNLGEGTYGVVYKARDKQTNDIVALKRIRLEMEDEGIP
STALREISLLQELRHPCIVELLDCVQSEGRLYLVFEFVDRDLKKYMEAQS
GQLARSVVKSFLFQIFHGLAFCHARGIMHRDLKPQNLLVSKEGRLKIADF
GLARAFVPPIRPLTHEVVTLWYRPPEILLGSQTYAPPVDVWACGVIFVEM
LCKRAMFQGDSEIDQLFKIFRSCGTPSEECWPGVTALQDWNPSFPIWPAV
KLTKYCPTIDEAGLDLLEKLVVLDPKGRISAKAALYHRYFEDLDKQQFRQ
*
back to top

mRNA from alignment at chr19:427385..430597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01390.1 ID=NO19G01390.1|Name=NO19G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3213bp|location=Sequence derived from alignment at chr19:427385..430597+ (Nannochloropsis oceanica)
AACCCTGCCCTATCCCTTCGCTTGCATCGCCCAAACACTCAAGTGGACCA
CTGTTCGCGACAGCCACAACAAATACCCATGCATCCAAACGCAAACTTGA
CGAGCCTTGGCAAATCGGTAGTGACTGTGTCCAGGAAAAAGACGCCTGGA
GCTTGGACTGGTCGAAATGTACGGCCGGCATGTTTTCCTTGCTCTGCCTC
GTCCCACCTTCTCAGGTTTATATAGGTTACCATTACGACCAAGCGAGCTG
TGGGTTATGGAAGACAATGGACGTTTGCGGTGTGAGGACCCATACAATGT
AGATGTGATAAGTATGGATCTCCTTGGCTGTGGAGAGGGCCGGAAGGGAC
ATCTGGACTTGCACCTGCTTGCACGGGCCAAGCGAAGTCACACAGAATTA
AGGAGAGGGTCGTTTTCGACACCCCCGTCTCACGCACACTTTCATACACG
CTCACACTGACCCGCGCAATCACACATTTACAAATATGTGACAGAGACGT
GTCCCGGATACAGCGGTAGGGCACGGACGGACAGCCAATGGACAGGTAAG
AGAATCGCTTCTTTCTCCCCCTCCCCGCTTTCCCCTGCGCCCTTTTAGCC
ACGCAGGCTTACACCCCCCTCTCTCCCTCCTTTCCACTTATTCCTACTCC
CGCTATCTTCAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCTGG
GAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCAAC
GACATCGTCGCCCTCAAGGTAGAGAGAGAGGAGGAAATGGGGGGAGGGAA
AGAGAGCGGCATGGTGAAAGTCAAGGAATGAGACCGAGCCTATGAATTAG
ATAGAAATGTGTAGGATAATAATTTGTAATTCATTGTGTCGATGCTTTGT
TTTTTCCCCGTGTTATGGGCATCATTTCCTTGTCGATGCCAGGGCGCATG
CATTACTTGGTGGCTCAAAACACACGTATATCAAAACACACTCATACGCA
CACCCTTTCACTCCCGACACCAATAGAGGATTCGTCTAGAGATGGAGGAT
GAAGGTATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCT
GAGGCACCCCTGCATTGTTGAGTACGTTTTTGAGGGAGTGACGAAGGGAT
GGAGGGAGAGAGGGCGTGTGAGCTGAAAAGAGGAAGGTGGTCGAGAGCAT
GGATACATAAGCAATGGGAAATCCATTTCCCACTTTCTGCCTCGCTTCCT
CGGTTTCTTCCATCTGACCCCTTCCCTCGCTCCCTCGCTCACTCCCTCCC
TCCTTCCTTCCCCCCGCCCCAGACTACTGGACTGTGTCCAAAGCGAAGGC
CGGCTATACCTCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACAT
GGAGGCCCAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCT
TCCAAATTTTCCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCAC
CGAGACCTTAAGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAA
AATTGCTGATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCT
TGACGCACGAGGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTG
GGCTCCCAGACGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGAT
CTTTGTGGAAATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGA
TTGATCAGCTCTTCAAGGTACACTCAATAGGTTCCCCTTCCCCCCTCTTC
CCCTCTTTCTCTCCTTCCCTCTTTCCTTCCCTCCGAGCCCTCGGCGCCTG
CGCTCGTGAGACGTATTCATTCGAGATGCTGGCCAGGCATGAAAGCACCA
CCTCACTGATCCCTTCTCCCTTTGCCCCCTCCCTCCTTCCCTTCCTCTTT
ATAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAGGCG
TAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCCGCCGTG
AAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGATTTGTT
GGAGGTACGTCCTCCGTCCCTCCCATCTTTCCTCCTTCACTCTCTTTTCC
TTCTCCTCTCCTCCCTACCGGTTCTCTTTCCCCCCTTTTCGGCCCGCCGT
GACGCTCACGAAATAACTGAACAATACGTGGTCATCGACGAGGCGGAGCT
GGAGAGAAGACTGATCTGAAGCGAAGAAAAAAAAGAGGGGGGAAGGCGTG
TCCTTGTCGTTGTGTCTACGTCTGGGTCGCGAAGCGCATCTCACCCTCTT
TTCCTCTTTCCCTATCTCAGAAACTGGTCGTGCTGGATCCCAAGGGGCGG
ATAAGCGCCAAGGCCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAA
ACAGCAGTTCAGGCAATAAGGGAATGAGGGAAGCAGGGAGGGACGAGGGA
GGGACGGAGGAATCTTGCTAGTTGTTTTAGTGTAGGTATTTTCTATGTGC
TCGTAAGGCCCGAGGCGGTTGTGCGCTTCGGTGGGGCACGACGTGTGAAA
TAAAGCGAGTGAAAGAGAGATGGAGTGAGAGAAGAATTGAAGGAGAGGAG
AGGGAGGGGGAGTGGGCAATAGAGGGAGGGAGGAGTTATGGGATCGAGTA
GAGTGTGCTATGCTTGGGTGCCTACACGATGACCAAAAATGACGACCTCC
TACAAGAGAGAGGATTGTGCCACAGTAAGAGGGAGAATAAGAGGAAGGCA
CGGTGACGCGCGAGAGAAGTATGAAGGCAAACGAACGAAAAGAAGTGCGC
GATAGAAGGAAGAAGAAGGAGGGAGAGAGTGTGTATGTGACGTAAAACGT
GAGACAAAAGAGCAACGTGACAAAAGGGGGGAAATGACGACGGAGAAAGA
AGGATAGTGAAAGATGACGAGGGAGGGAGGGAAGAAGACAGGGGAGGAAG
AAAGTGTAGTCACACACAAGGGGTCCACAGGCGGCCGCTCGCCATTTGCG
CTGCATGTGCCTCCATGCGATGCTGTGGAGAAAGGTGGGGGGGAAGAGAG
TGTGAGCCTAACCCTAAACGGAAACATGAGCGCGACCACACCGCCCCAAT
GGAAAGAGGTCCAAGAAGAAAGATGTGAGGAAAGAAAATGGCGTAGCATG
GAACTTGAGCTAA
back to top

Coding sequence (CDS) from alignment at chr19:427385..430597+

>NO19G01390.1 ID=NO19G01390.1|Name=NO19G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr19:427385..430597+ (Nannochloropsis oceanica)
ATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCTGGGAGA
GGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCAACGACA
TCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAAGGTATCCCC
AGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAGGCACCCCTG
CATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGCTATACCTCG
TCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAGGCCCAGTCG
GGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCAAATTTTCCA
CGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAGACCTTAAGC
CACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATTGCTGATTTC
GGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGACGCACGAGGT
GGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCTCCCAGACGT
ACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTTGTGGAAATG
CTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGATCAGCTCTT
CAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAGGCG
TAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCCGCCGTG
AAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGATTTGTT
GGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCGCCAAGGCCG
CCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAGTTCAGGCAA
TAA
back to top
Synonyms
Publications