NO19G01320.1, NO19G01320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01320.1
Unique NameNO19G01320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1683
Alignment locationchr19:413051..414833 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:413051..414833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01320.1 vs.
Match: EWM23631.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 710.7 bits (1833), Expect = 3.600e-201
Identity = 357/491 (72.71%), Postives = 416/491 (84.73%), Query Frame = 0 
Query:   74 SADQVEEKLEELWMTDVPSSLDSIIDEAQASLGVALAAGEKRLRVDVRTPGMDEQFEQTAIREKALLLGVIEAFFPLFAAQPTKILFDSEGDAALASKAYSRGFDIPATCSFAGLSPQSIAPTDEIIFLIEPTNRPGSPVISAIQSLLDTNPDKTFILFNPNLEPSGAGLGIRERDRRQQFLDSFKSAYIYLCLASLSRPALIPRELGTFHYQFEQNNYRLLRCLLTEDGPGSLNRFLKRPIYPSSSLTPTATNPPKFYLVKEWAGVRPAQEELSRAMQGAEAVLEGLIRGLSEGEGGKEGAARSVMKIETVDEAKRVLVEASQTRKVAPELVGAAISFLEKSARKGKKSPEDGEKEAEELLRKITGRWRLIFTTGTKGTQNTIGKINYFPVKAVQSFGVPFSSSLPPSSPS----EYANVIYLGPWPVVQVLGSFNCPKFQKLEFKVDSIKLGPVGFGSKGDGFFTFFYVDEAVAVARGQGGGLALWYKQ 561
            S+DQ+ EKLE +W T+VPSSL++II EAQASL  AL AGEKRLR+D+RTPG+DEQFEQTA REKALLLGVIEAFFPLFA +PTKILF+SEG+AA+A+KAYSRGF+IP +CSF+GLSP S++ +DE++F++EPTNRPGSPVI A+++LLD  P KTF+LFNPNLEP GAGLGIRERDRRQ FLDSF+SAYIYLCLASLSRPAL+PRELG+ HYQ+E + YRLLRCLL EDGPGSLNRFLKR IY +S +TPTA  PP F+ V+EWAGVRP QEELSRAMQGAEAVLEGL+R +S GEG           +ETV+ AK VLVEA++TR V PE V  AI FLEK +RKGKK PE+    AEEL R+I GRWRLIFTTGTKGTQ  +GKINYFPVKAVQSFGV    S P +S S     Y+NVIYLG WP+VQVLGSF+CP+ +KLEFKV+SIKLGP+GFGS+G+GFFTFFYVDEAVAVARGQGGGLALWY++
Sbjct:   65 SSDQLREKLEGVWETNVPSSLNAIIKEAQASLAAALQAGEKRLRIDIRTPGLDEQFEQTAAREKALLLGVIEAFFPLFANRPTKILFESEGEAAMAAKAYSRGFEIPTSCSFSGLSPSSLSDSDEVVFVVEPTNRPGSPVIVALEALLDACPGKTFVLFNPNLEPGGAGLGIRERDRRQSFLDSFRSAYIYLCLASLSRPALVPRELGSLHYQYETDRYRLLRCLLPEDGPGSLNRFLKRRIYATSLITPTAEAPPNFFSVQEWAGVRPGQEELSRAMQGAEAVLEGLVRKMS-GEGPP--------PVETVEAAKDVLVEAARTRGVDPERVARAIGFLEKGSRKGKKGPEEKTAAAEELRRQIQGRWRLIFTTGTKGTQAAVGKINYFPVKAVQSFGVSSLPSSPSTSSSSLSTNYSNVIYLGSWPLVQVLGSFSCPENKKLEFKVESIKLGPLGFGSRGEGFFTFFYVDEAVAVARGQGGGLALWYRE 546
The following BLAST results are available for this feature:
BLAST of NO19G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23631.13.600e-20172.71protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01320NO19G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01320.1NO19G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01320.1.cds1NO19G01320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01320.1.cds2NO19G01320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01320.1 ID=NO19G01320.1|Name=NO19G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ATGCCACTCCCTCGGCGTCGTCTTCTGCAGGGCCCGCCCAGGACTGCTAT
CCTCCCCACGCTGCTCTTCGCGGGCTATGCGTTTGTTCTCCTTCTTCAAG
CCGTGTCGGCGTTCGTCCTTCCCAACAGCCGCCACCATCACCATCATCGC
CAGCACTATTACCATGTTCAACCGACCAGCACTCGCCTCGCCCTCTCCCA
AGCCTTTTCCCTCGGGTTAAGCGCTGATCAAGTCGAGGAGAAGCTCGAGG
AATTGTGGATGACGGACGTACCCAGCTCACTTGATTCTATCATCGATGAG
GCACAAGCCTCGTTGGGTGTTGCCTTGGCGGCGGGGGAGAAACGCTTGCG
TGTTGACGTGCGGACGCCCGGGATGGACGAGCAGTTCGAACAGACTGCCA
TCCGCGAAAAGGCCCTTCTTCTCGGTGTCATCGAAGCCTTCTTTCCCCTC
TTCGCCGCGCAGCCCACGAAAATTCTCTTCGATTCTGAAGGCGATGCAGC
CTTAGCTAGTAAAGCCTACAGCCGCGGTTTTGACATCCCTGCGACTTGTT
CCTTTGCTGGACTCTCCCCACAGTCCATCGCGCCAACCGACGAAATCATT
TTTTTAATCGAACCGACCAACCGCCCGGGCTCCCCCGTGATTAGCGCTAT
TCAGTCTTTGCTTGACACTAATCCAGATAAGACTTTTATTCTGTTTAACC
CTAACCTTGAGCCGTCCGGTGCAGGGCTTGGAATCCGCGAACGCGATCGC
CGGCAGCAATTTCTTGACTCCTTCAAATCTGCGTACATCTACTTGTGTCT
CGCCTCGCTCTCGCGCCCCGCGCTGATTCCTAGGGAATTAGGGACCTTTC
ATTATCAATTTGAACAGAACAACTATCGCCTTTTGCGGTGTCTCCTGACA
GAAGATGGCCCTGGGAGCCTTAACCGTTTCCTCAAACGCCCAATCTACCC
TTCCTCGTCCCTCACCCCTACTGCTACGAATCCGCCCAAGTTTTATCTGG
TTAAGGAATGGGCAGGCGTACGACCGGCTCAGGAAGAGTTGTCAAGAGCA
ATGCAAGGAGCTGAGGCAGTCTTGGAAGGATTGATTCGAGGACTGAGCGA
GGGTGAGGGAGGGAAGGAAGGAGCGGCACGGAGCGTAATGAAAATAGAAA
CAGTCGACGAAGCCAAGCGCGTCCTAGTCGAGGCTTCACAAACTCGAAAG
GTCGCCCCTGAACTCGTCGGCGCTGCCATATCTTTCCTGGAGAAAAGTGC
GCGAAAAGGGAAAAAGTCCCCTGAAGACGGCGAGAAAGAGGCAGAAGAGC
TCTTGAGGAAAATAACAGGTCGCTGGCGCCTCATTTTCACCACGGGGACC
AAAGGCACACAAAACACAATTGGCAAAATTAATTACTTCCCCGTCAAGGC
TGTGCAAAGCTTCGGAGTGCCGTTCTCGTCTTCCCTCCCTCCCTCGTCCC
CGAGTGAGTATGCGAATGTTATTTATCTCGGTCCCTGGCCAGTTGTGCAA
GTGCTCGGGTCGTTTAATTGCCCGAAATTTCAAAAATTGGAATTCAAAGT
TGATAGTATTAAGCTGGGTCCCGTTGGGTTTGGATCAAAGGGGGATGGAT
TCTTCACTTTTTTTTATGTGGATGAGGCGGTGGCTGTTGCGAGGGGGCAG
GGAGGGGGCTTGGCTCTATGGTATAAGCAGTAG
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protein sequence of NO19G01320.1

>NO19G01320.1-protein ID=NO19G01320.1-protein|Name=NO19G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MPLPRRRLLQGPPRTAILPTLLFAGYAFVLLLQAVSAFVLPNSRHHHHHR
QHYYHVQPTSTRLALSQAFSLGLSADQVEEKLEELWMTDVPSSLDSIIDE
AQASLGVALAAGEKRLRVDVRTPGMDEQFEQTAIREKALLLGVIEAFFPL
FAAQPTKILFDSEGDAALASKAYSRGFDIPATCSFAGLSPQSIAPTDEII
FLIEPTNRPGSPVISAIQSLLDTNPDKTFILFNPNLEPSGAGLGIRERDR
RQQFLDSFKSAYIYLCLASLSRPALIPRELGTFHYQFEQNNYRLLRCLLT
EDGPGSLNRFLKRPIYPSSSLTPTATNPPKFYLVKEWAGVRPAQEELSRA
MQGAEAVLEGLIRGLSEGEGGKEGAARSVMKIETVDEAKRVLVEASQTRK
VAPELVGAAISFLEKSARKGKKSPEDGEKEAEELLRKITGRWRLIFTTGT
KGTQNTIGKINYFPVKAVQSFGVPFSSSLPPSSPSEYANVIYLGPWPVVQ
VLGSFNCPKFQKLEFKVDSIKLGPVGFGSKGDGFFTFFYVDEAVAVARGQ
GGGLALWYKQ*
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mRNA from alignment at chr19:413051..414833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01320.1 ID=NO19G01320.1|Name=NO19G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at chr19:413051..414833- (Nannochloropsis oceanica)
ATGCCACTCCCTCGGCGTCGTCTTCTGCAGGGCCCGCCCAGGACTGCTAT
CCTCCCCACGCTGCTCTTCGCGGGCTATGCGTTTGTTCTCCTTCTTCAAG
CCGTGTCGGCGTTCGTCCTTCCCAACAGCCGCCACCATCACCATCATCGC
CAGCACTATTACCATGTTCAACCGACCAGCACTCGCCTCGCCCTCTCCCA
AGCCTTTTCCCTCGGGTTAAGCGCTGATCAAGTCGAGGAGAAGCTCGAGG
AATTGTGGATGACGGACGTACCCAGCTCACTTGATTCTATCATCGATGAG
GCACAAGCCTCGTTGGGTGTTGCCTTGGCGGCGGGGGAGAAACGCTTGCG
TGTTGACGTGCGGACGCCCGGGATGGACGAGCAGTTCGAACAGACTGCCA
TCCGCGAAAAGGTAGGGTCCAGGACACGAATAAATTTACTTATTTGTGTC
GCTTGGTATCTTATGCATGGCTCCCTTTCTCCCTCCCTCTTCCCTCCGCT
CCCCTCCTCAGGCCCTTCTTCTCGGTGTCATCGAAGCCTTCTTTCCCCTC
TTCGCCGCGCAGCCCACGAAAATTCTCTTCGATTCTGAAGGCGATGCAGC
CTTAGCTAGTAAAGCCTACAGCCGCGGTTTTGACATCCCTGCGACTTGTT
CCTTTGCTGGACTCTCCCCACAGTCCATCGCGCCAACCGACGAAATCATT
TTTTTAATCGAACCGACCAACCGCCCGGGCTCCCCCGTGATTAGCGCTAT
TCAGTCTTTGCTTGACACTAATCCAGATAAGACTTTTATTCTGTTTAACC
CTAACCTTGAGCCGTCCGGTGCAGGGCTTGGAATCCGCGAACGCGATCGC
CGGCAGCAATTTCTTGACTCCTTCAAATCTGCGTACATCTACTTGTGTCT
CGCCTCGCTCTCGCGCCCCGCGCTGATTCCTAGGGAATTAGGGACCTTTC
ATTATCAATTTGAACAGAACAACTATCGCCTTTTGCGGTGTCTCCTGACA
GAAGATGGCCCTGGGAGCCTTAACCGTTTCCTCAAACGCCCAATCTACCC
TTCCTCGTCCCTCACCCCTACTGCTACGAATCCGCCCAAGTTTTATCTGG
TTAAGGAATGGGCAGGCGTACGACCGGCTCAGGAAGAGTTGTCAAGAGCA
ATGCAAGGAGCTGAGGCAGTCTTGGAAGGATTGATTCGAGGACTGAGCGA
GGGTGAGGGAGGGAAGGAAGGAGCGGCACGGAGCGTAATGAAAATAGAAA
CAGTCGACGAAGCCAAGCGCGTCCTAGTCGAGGCTTCACAAACTCGAAAG
GTCGCCCCTGAACTCGTCGGCGCTGCCATATCTTTCCTGGAGAAAAGTGC
GCGAAAAGGGAAAAAGTCCCCTGAAGACGGCGAGAAAGAGGCAGAAGAGC
TCTTGAGGAAAATAACAGGTCGCTGGCGCCTCATTTTCACCACGGGGACC
AAAGGCACACAAAACACAATTGGCAAAATTAATTACTTCCCCGTCAAGGC
TGTGCAAAGCTTCGGAGTGCCGTTCTCGTCTTCCCTCCCTCCCTCGTCCC
CGAGTGAGTATGCGAATGTTATTTATCTCGGTCCCTGGCCAGTTGTGCAA
GTGCTCGGGTCGTTTAATTGCCCGAAATTTCAAAAATTGGAATTCAAAGT
TGATAGTATTAAGCTGGGTCCCGTTGGGTTTGGATCAAAGGGGGATGGAT
TCTTCACTTTTTTTTATGTGGATGAGGCGGTGGCTGTTGCGAGGGGGCAG
GGAGGGGGCTTGGCTCTATGGTATAAGCAGTAG
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Coding sequence (CDS) from alignment at chr19:413051..414833-

>NO19G01320.1 ID=NO19G01320.1|Name=NO19G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr19:413051..414833- (Nannochloropsis oceanica)
ATGCCACTCCCTCGGCGTCGTCTTCTGCAGGGCCCGCCCAGGACTGCTAT
CCTCCCCACGCTGCTCTTCGCGGGCTATGCGTTTGTTCTCCTTCTTCAAG
CCGTGTCGGCGTTCGTCCTTCCCAACAGCCGCCACCATCACCATCATCGC
CAGCACTATTACCATGTTCAACCGACCAGCACTCGCCTCGCCCTCTCCCA
AGCCTTTTCCCTCGGGTTAAGCGCTGATCAAGTCGAGGAGAAGCTCGAGG
AATTGTGGATGACGGACGTACCCAGCTCACTTGATTCTATCATCGATGAG
GCACAAGCCTCGTTGGGTGTTGCCTTGGCGGCGGGGGAGAAACGCTTGCG
TGTTGACGTGCGGACGCCCGGGATGGACGAGCAGTTCGAACAGACTGCCA
TCCGCGAAAAGGCCCTTCTTCTCGGTGTCATCGAAGCCTTCTTTCCCCTC
TTCGCCGCGCAGCCCACGAAAATTCTCTTCGATTCTGAAGGCGATGCAGC
CTTAGCTAGTAAAGCCTACAGCCGCGGTTTTGACATCCCTGCGACTTGTT
CCTTTGCTGGACTCTCCCCACAGTCCATCGCGCCAACCGACGAAATCATT
TTTTTAATCGAACCGACCAACCGCCCGGGCTCCCCCGTGATTAGCGCTAT
TCAGTCTTTGCTTGACACTAATCCAGATAAGACTTTTATTCTGTTTAACC
CTAACCTTGAGCCGTCCGGTGCAGGGCTTGGAATCCGCGAACGCGATCGC
CGGCAGCAATTTCTTGACTCCTTCAAATCTGCGTACATCTACTTGTGTCT
CGCCTCGCTCTCGCGCCCCGCGCTGATTCCTAGGGAATTAGGGACCTTTC
ATTATCAATTTGAACAGAACAACTATCGCCTTTTGCGGTGTCTCCTGACA
GAAGATGGCCCTGGGAGCCTTAACCGTTTCCTCAAACGCCCAATCTACCC
TTCCTCGTCCCTCACCCCTACTGCTACGAATCCGCCCAAGTTTTATCTGG
TTAAGGAATGGGCAGGCGTACGACCGGCTCAGGAAGAGTTGTCAAGAGCA
ATGCAAGGAGCTGAGGCAGTCTTGGAAGGATTGATTCGAGGACTGAGCGA
GGGTGAGGGAGGGAAGGAAGGAGCGGCACGGAGCGTAATGAAAATAGAAA
CAGTCGACGAAGCCAAGCGCGTCCTAGTCGAGGCTTCACAAACTCGAAAG
GTCGCCCCTGAACTCGTCGGCGCTGCCATATCTTTCCTGGAGAAAAGTGC
GCGAAAAGGGAAAAAGTCCCCTGAAGACGGCGAGAAAGAGGCAGAAGAGC
TCTTGAGGAAAATAACAGGTCGCTGGCGCCTCATTTTCACCACGGGGACC
AAAGGCACACAAAACACAATTGGCAAAATTAATTACTTCCCCGTCAAGGC
TGTGCAAAGCTTCGGAGTGCCGTTCTCGTCTTCCCTCCCTCCCTCGTCCC
CGAGTGAGTATGCGAATGTTATTTATCTCGGTCCCTGGCCAGTTGTGCAA
GTGCTCGGGTCGTTTAATTGCCCGAAATTTCAAAAATTGGAATTCAAAGT
TGATAGTATTAAGCTGGGTCCCGTTGGGTTTGGATCAAAGGGGGATGGAT
TCTTCACTTTTTTTTATGTGGATGAGGCGGTGGCTGTTGCGAGGGGGCAG
GGAGGGGGCTTGGCTCTATGGTATAAGCAGTAG
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Synonyms
Publications