NO19G01190.1, NO19G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01190.1
Unique NameNO19G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr19:386463..387344 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:386463..387344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01190.1 vs.
Match: EWM23622.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 394.4 bits (1012), Expect = 3.000e-106
Identity = 205/268 (76.49%), Postives = 233/268 (86.94%), Query Frame = 0 
Query:   26 RQFSSSSTSTTSTSTNDDKSNFSSGPKIVVLGGSGYVGRHVLQAALNRGADAVSINRSGKPEGGQASGSWLSQVKWVASDVFDSNSWAKELEGAVGVVSCIGAFGSNAFMERINGDANVLAVETAAKAGVPHFVYVSTVENNLPDFILKGYFKGKKRAEEAVLKSFPGRKGMVLRPSFVYGTRQVGSLSLPLAAVGRPMELLFRLPPFPSLRQTLPGTQALLAPPVSVQAVATVAAAGALGDGRVKEGEGEREGVLSVDDIVRLARIV 294
            R+ ++S+TS +S ++   + +  S  K+VVLGGSGYVG+HVLQAAL RGADAVSINRSG P     SGSWLSQVKWVA+D+F+S++W+KELEGA GVVSCIGAFGSN FME+INGDANVLA E AAK  VPHFVYVSTVENNLPDF+LKGYF GK+RAEEAVL SFPG +G+VLRPSFVYGTR VG LSLPLA VGRP+E+LFR PPFPSLRQTLPGTQALLAPPV+VQAVA+VAAAGA+GD RVK GEG REGVLSVDDIVR+AR V
Sbjct:   43 RRLTTSATSNSSDTSTMQEDSPPSAAKVVVLGGSGYVGQHVLQAALYRGADAVSINRSGIP---NTSGSWLSQVKWVAADIFNSSAWSKELEGATGVVSCIGAFGSNEFMEKINGDANVLAAEVAAKMEVPHFVYVSTVENNLPDFLLKGYFHGKRRAEEAVLSSFPGGRGLVLRPSFVYGTRAVGPLSLPLAVVGRPLEVLFRFPPFPSLRQTLPGTQALLAPPVAVQAVASVAAAGAMGDARVKAGEGAREGVLSVDDIVRVAREV 307
The following BLAST results are available for this feature:
BLAST of NO19G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23622.13.000e-10676.49NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01190NO19G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01190.1NO19G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01190.1.cds1NO19G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01190.1 ID=NO19G01190.1|Name=NO19G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGACCGCCGCCTTGGCCAGAGGCTTTGGCCTCCCCTCCTCCCTTCTTCC
TCAGATGATGAAGCGCCGTCTGCCACGTCAATTCAGCAGCAGCAGCACCT
CGACCACCAGCACGAGCACCAACGACGACAAAAGCAACTTTTCCTCCGGT
CCCAAGATTGTGGTGCTTGGTGGGAGTGGCTACGTGGGGCGGCATGTGCT
GCAAGCGGCCTTGAATCGAGGGGCGGACGCGGTGAGCATCAACCGTTCTG
GCAAGCCCGAAGGGGGCCAGGCGAGTGGAAGCTGGCTCTCGCAAGTCAAG
TGGGTGGCGTCCGACGTCTTTGATAGCAACTCTTGGGCGAAGGAATTAGA
GGGGGCCGTGGGGGTGGTGTCGTGCATTGGGGCGTTTGGGTCCAACGCGT
TCATGGAGAGGATTAATGGTGATGCCAACGTCCTCGCTGTAGAAACAGCA
GCAAAGGCGGGCGTGCCTCATTTTGTCTATGTCTCAACCGTCGAAAATAA
TTTGCCAGATTTCATTTTAAAAGGGTATTTTAAGGGAAAGAAACGCGCAG
AGGAAGCGGTGCTCAAGTCTTTTCCGGGGAGGAAAGGGATGGTCTTACGT
CCGTCTTTTGTGTATGGCACGCGGCAAGTTGGTTCGCTTTCCCTTCCCTT
AGCAGCGGTTGGTCGTCCGATGGAGTTGCTCTTTCGCCTGCCACCTTTTC
CAAGCCTGAGGCAGACCTTGCCTGGGACGCAGGCCCTCCTAGCTCCTCCT
GTATCGGTTCAAGCAGTAGCAACAGTGGCAGCAGCGGGCGCACTGGGGGA
TGGGAGGGTCAAGGAAGGGGAGGGAGAGAGGGAGGGGGTGTTGTCGGTGG
ATGATATTGTGAGGTTGGCGAGGATCGTGTGA
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protein sequence of NO19G01190.1

>NO19G01190.1-protein ID=NO19G01190.1-protein|Name=NO19G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MTAALARGFGLPSSLLPQMMKRRLPRQFSSSSTSTTSTSTNDDKSNFSSG
PKIVVLGGSGYVGRHVLQAALNRGADAVSINRSGKPEGGQASGSWLSQVK
WVASDVFDSNSWAKELEGAVGVVSCIGAFGSNAFMERINGDANVLAVETA
AKAGVPHFVYVSTVENNLPDFILKGYFKGKKRAEEAVLKSFPGRKGMVLR
PSFVYGTRQVGSLSLPLAAVGRPMELLFRLPPFPSLRQTLPGTQALLAPP
VSVQAVATVAAAGALGDGRVKEGEGEREGVLSVDDIVRLARIV*
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mRNA from alignment at chr19:386463..387344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01190.1 ID=NO19G01190.1|Name=NO19G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr19:386463..387344+ (Nannochloropsis oceanica)
ATGACCGCCGCCTTGGCCAGAGGCTTTGGCCTCCCCTCCTCCCTTCTTCC
TCAGATGATGAAGCGCCGTCTGCCACGTCAATTCAGCAGCAGCAGCACCT
CGACCACCAGCACGAGCACCAACGACGACAAAAGCAACTTTTCCTCCGGT
CCCAAGATTGTGGTGCTTGGTGGGAGTGGCTACGTGGGGCGGCATGTGCT
GCAAGCGGCCTTGAATCGAGGGGCGGACGCGGTGAGCATCAACCGTTCTG
GCAAGCCCGAAGGGGGCCAGGCGAGTGGAAGCTGGCTCTCGCAAGTCAAG
TGGGTGGCGTCCGACGTCTTTGATAGCAACTCTTGGGCGAAGGAATTAGA
GGGGGCCGTGGGGGTGGTGTCGTGCATTGGGGCGTTTGGGTCCAACGCGT
TCATGGAGAGGATTAATGGTGATGCCAACGTCCTCGCTGTAGAAACAGCA
GCAAAGGCGGGCGTGCCTCATTTTGTCTATGTCTCAACCGTCGAAAATAA
TTTGCCAGATTTCATTTTAAAAGGGTATTTTAAGGGAAAGAAACGCGCAG
AGGAAGCGGTGCTCAAGTCTTTTCCGGGGAGGAAAGGGATGGTCTTACGT
CCGTCTTTTGTGTATGGCACGCGGCAAGTTGGTTCGCTTTCCCTTCCCTT
AGCAGCGGTTGGTCGTCCGATGGAGTTGCTCTTTCGCCTGCCACCTTTTC
CAAGCCTGAGGCAGACCTTGCCTGGGACGCAGGCCCTCCTAGCTCCTCCT
GTATCGGTTCAAGCAGTAGCAACAGTGGCAGCAGCGGGCGCACTGGGGGA
TGGGAGGGTCAAGGAAGGGGAGGGAGAGAGGGAGGGGGTGTTGTCGGTGG
ATGATATTGTGAGGTTGGCGAGGATCGTGTGA
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Coding sequence (CDS) from alignment at chr19:386463..387344+

>NO19G01190.1 ID=NO19G01190.1|Name=NO19G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr19:386463..387344+ (Nannochloropsis oceanica)
ATGACCGCCGCCTTGGCCAGAGGCTTTGGCCTCCCCTCCTCCCTTCTTCC
TCAGATGATGAAGCGCCGTCTGCCACGTCAATTCAGCAGCAGCAGCACCT
CGACCACCAGCACGAGCACCAACGACGACAAAAGCAACTTTTCCTCCGGT
CCCAAGATTGTGGTGCTTGGTGGGAGTGGCTACGTGGGGCGGCATGTGCT
GCAAGCGGCCTTGAATCGAGGGGCGGACGCGGTGAGCATCAACCGTTCTG
GCAAGCCCGAAGGGGGCCAGGCGAGTGGAAGCTGGCTCTCGCAAGTCAAG
TGGGTGGCGTCCGACGTCTTTGATAGCAACTCTTGGGCGAAGGAATTAGA
GGGGGCCGTGGGGGTGGTGTCGTGCATTGGGGCGTTTGGGTCCAACGCGT
TCATGGAGAGGATTAATGGTGATGCCAACGTCCTCGCTGTAGAAACAGCA
GCAAAGGCGGGCGTGCCTCATTTTGTCTATGTCTCAACCGTCGAAAATAA
TTTGCCAGATTTCATTTTAAAAGGGTATTTTAAGGGAAAGAAACGCGCAG
AGGAAGCGGTGCTCAAGTCTTTTCCGGGGAGGAAAGGGATGGTCTTACGT
CCGTCTTTTGTGTATGGCACGCGGCAAGTTGGTTCGCTTTCCCTTCCCTT
AGCAGCGGTTGGTCGTCCGATGGAGTTGCTCTTTCGCCTGCCACCTTTTC
CAAGCCTGAGGCAGACCTTGCCTGGGACGCAGGCCCTCCTAGCTCCTCCT
GTATCGGTTCAAGCAGTAGCAACAGTGGCAGCAGCGGGCGCACTGGGGGA
TGGGAGGGTCAAGGAAGGGGAGGGAGAGAGGGAGGGGGTGTTGTCGGTGG
ATGATATTGTGAGGTTGGCGAGGATCGTGTGA
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Synonyms
Publications