NO19G01090.1, NO19G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01090.1
Unique NameNO19G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3939
Alignment locationchr19:360996..365082 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:360996..365082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO19G01090.1 vs.
Match: CEM13724.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 143.3 bits (360), Expect = 8.800e-31
Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 0
Query:    9 SEYIRTTT-NYISRKALIEGPQYVEMRGRSIVEEDVTIRGDLAPIRVGHYCFFAAGSVLSPCFIIAPPQYEPQQQQQQPPQPPQPPQQQQSKQRYIPMTIGSMTNIGPDAVIQAASIGSHVEIGANCIVSPRCILKDCCRLAPGTVLPPDSVVPPFALMSGAPAKMVGELPPSVVSTMKEKAQGRYRR 196
            SEYI+T + N +SRK+++ G Q +++ GRSI++  V +RGDLA +R+G Y      +VL P                       P ++ +    + PM IG    IG   V+ AA IGS+V+IG NCI+  RC++KD CR+ PGT+LPPD+VVPPF +  G P + +GELP SV    KE+A   YRR
Sbjct:   12 SEYIQTASGNKVSRKSVLCGSQNIQLSGRSIIKPGVILRGDLALLRIGKYVIVGEDTVLRP-----------------------PYKKYRGGFAFFPMAIGDYVTIGDKTVVNAALIGSYVDIGDNCIICKRCVIKDNCRILPGTILPPDTVVPPFTVFGGTPGRCLGELPESVQFVHKERANAYYRR 176          
The following BLAST results are available for this feature:
BLAST of NO19G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM13724.18.800e-3141.49unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01090NO19G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01090.1NO19G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01090.1.cds1NO19G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01090.1.cds2NO19G01090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=3939bp
CCCACCATTCTTTCTTCGTTCTTCCCCCATTCCTTCCTCTTTGTCTCGCA
CTCGTGCTTGCACCCGAACGCAAATCCACCCACACGCACACCAAGACACA
GGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATAC
GCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAG
TATGTGGAGATGCGTGGACGAAGCATCGTGGAAGAAGACGTTACCATCCG
TGGCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCG
GCTCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCT
CAACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCCAGCAGCA
GCAGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATGACTAACA
TAGGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAG
ATCGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTG
TCGTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCT
TTGCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCC
AGTGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAG
GAAGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGC
GTTAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATATCGTGGCT
TGTCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATAGTGGAAT
ATCCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGCAGAGACG
GAGAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACAGACGGACT
GAGGGAGAGAAAGACAGACAGACAGAGAGACAGAAAGACAGAGAGAAGGG
AAAGGGTTGAAGGGGTCCAGAGAGAAAAAAAAGGAAAGAAGCGGAAAAAG
GTTAGGAGGAAGATCAAGTGGGGAAAAAACAAACGCACAAATGCAATAGT
AAACTCATAGATGCGCTTCTCGCAGGCTATCATTATGACCATCATCATCA
TCACCATAAGTAATGTTATTATCATCATCATCATCCTTCTTGATTCACTA
CTCCCACTTTCCCCATCCTCTTCCTCCTCCCTTCTCCCCTCCCTGCCCCC
CTCCCTCTCTCCCCCTCAAAGCCCTCACCGCAACCATCGTCTGAGCCGGC
CCAGCCAGGAAGCCCCTATTTACTCATCCTTCCTTCCCATTCCCCTCTCC
TCCTCCTCCACCACCACCACCTCCTCCTCCTCCTCCTCCAAACATTCCCT
TCAAAGTCATCTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAT
GCCTTCACCGCAACCAGCGTTTGGGCCATCAAATCCTTCGCTGTCTGTAT
CCTCTCATCATTCATTCCCCTAATCCTTGTCCTGTCCAAGCCCATTACCC
GTCGCGCCACCTCCCCCGCATACCCCTCCCTCTGTCCCTTCCTTCCCTCC
TTCCCTCCCTTCCTCGACGGCCGGGGGAGGCTTGTCAAGCTCATTTGCAC
CCACAAGGCAATAAAGATGGCGAAGAACAGCGTGCGCTCACCGGTACCCC
TCCTTTTCTCTCTCCCTCCTACCTTTGCTTTTCCGTTCGATGAGGGAGGG
AGGGATGACGAGGTGGGAGCAAGGAAATCACCAGCGAGCTCTCCCTCTTC
AATTTTTTCGAGCAGAAAGAGGAAATATGCTTGACGCTCTTCCTCTGTTC
CAGTTGGGAGGGACTGGAGGAGGACGAGGGCAGAAGGGAGGGAGGGAGGG
GAAGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGAGCCTGTCCTCTAGGAT
GGTCCGGAGCAGGGCGGTGACGAGGTCCTTCCCCCTCTCGGTGGACAGAG
AGATGCACCGAGAGATGTGGAGCAAAGACGCGACACCAAGCCTCACATCC
TCCTCCTTCACCAAGCCGGCAATTAGGGCAGGGAGGGTGGGCGAGGGCCA
AAGGGAAGGGGGGAGAGAGGGCGAGTTGAGGAGGGCGGAGATGCAGGTGC
GGAGGGAGGAGGGGCAGTCTGCTTGGATGTATCGGTCAAGAGTGAGGAGG
AGGAGGGTGTGGAGGAGGGAGGTGGTGAAAGAGGGGGAAAGGGAGAGAGG
GGAGGAGGAGGAGGGAGAGAAGCAGGAGGAGGAGGAGGAGAAGCAGGAGG
AGGAGGAGGAGAAGAAGCAGGAGGAGAGGGAGATAAAAAGGTCTCGGAGG
TTGCCGGTGGGCGGAATGCTGCTCTTGTCCAGTGCCGGAGGTGGTGGAAC
CTTGTCCTCCTTCCCGCCTTCCTCCTCTTCATCGTCCTCGTCGTGATCAA
CGGCGTGGTCTAAGTGGGTTGTGTCTATCGCGCGCCTCAACACAGGGTGG
GGGTAGCCCCAGGAGGACGAGGACGAGGAAGGGAGCGAGGACGAAGACGA
AACCAACAAAGGGGAGGTCACATCGCACCCACCTCCTCCCCCGTCCTCCT
TCCCTCCCTCTTCCTCGCCCTCCTCCGCTTCCTTTCCTCCCACAAAAACC
CCGAATCCCCTGAAGAGTTCCTGGATCAACGCTCCTTCCAATCTCCACCC
TCCCTCCTTCCCTCCCTCCCTCCCCTTCATCGGCATCAACTTCCTTAAAT
TCAAATATGAAGCATGTGCCAAGACAGGGTCAGCGTGCCACGTCATCACC
TTCCAAAGGTTGGTGATGAGGAGGGAGGGAGGGGGAAGCTGCTGCGAGGC
AAGCCAGCGTGAAGGAGCAAGAAGGGAAAGGAGGTCGGGGAGGGTCCCTT
GGTGCTCTGCATCTTCCAGAGCTTCGGCCAGTTTCCCGTACTGCTCGAGA
ACATTCGCGTTCTTATTGTTGCTGCTGCTGTTGCTGATGCTGTTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCGTGCGTTGCCATCCCCTCCCCCTC
TCCCTCTGCCGCTCGAAGGAAGAAGAGGGGAAGGCACCACCATGCCTCCC
CATTCCCCCTCCTCCCCATCATCTTCCTGACGCATGGTGAAGACGCTTGT
AAGACCCAACCACTCCACAAATTCCTCCCTCTCCATGTCCAGGTCTGACT
CCTTGTCCTCCTCCCCTCTTTCCCCGCCATTCCTATAGACGAAGTTACCA
AACCCATTCTTCGTTTTTTTCTTTCCCTGCTTTTCCCTTTCTTTTCCCTT
ATCTTGCCTATCTTCCTCCTCCTCCATCTCTCCCTCACTCTCACTACTAC
TACTCATACTCAACAACATCTCCTCCGTCTTCACGATCCTGTCAAACGAC
GACACTGAAGACACCCTCGTCCCTCCTCCTCCCTCCTCTTCTCCTCCCCC
GTCACCCCTTAGATGCTCCAAAGCGCGCTTCTCCTTCTCTTGCTCCTTTA
TCAAATTACTCAGAGAAAACGTGTCCTTCTTGGTGGCATCGATGGAGGAA
AGGGAGAGAGGCACGTAGCTGCTGCTGGTGCTCGTTTTTCGCTTAGCAGA
GGCTGCAAGAGGGGCCATAAAATCGGCCAGAAGGTCTTCCTCCTCCTCCT
CGAGGCTCATATTGGTCATCTGTACGTTGAGATTGTTTGATATGTCAGTG
CTTCGGGCATGGCGGTGGGATAGAAGAAGATAGGGGAGGCATCTGGACTG
GGGCGCGACAGTCCTGCTGCTGCAGCTTCTGCCGCCGCCAGTGCTGTCTT
TAGAGACCGCAAAATCAGCCCCGCGTTCATTGTCCTCTCCTACTGGGCGG
TGCTCATGCTGCTCTGTTGCTTGTGTCATTGCGAGGTCGGGTTGGACGTG
GAGAAATGCTCTCTTATCCTTGGGAAGGCAGTAGCGAAG
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protein sequence of NO19G01090.1

>NO19G01090.1-protein ID=NO19G01090.1-protein|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MSSASSASSEYIRTTTNYISRKALIEGPQYVEMRGRSIVEEDVTIRGDLA
PIRVGHYCFFAAGSVLSPCFIIAPPQYEPQQQQQQPPQPPQPPQQQQSKQ
RYIPMTIGSMTNIGPDAVIQAASIGSHVEIGANCIVSPRCILKDCCRLAP
GTVLPPDSVVPPFALMSGAPAKMVGELPPSVVSTMKEKAQGRYRRRKRWI
VGEGGSGSSSSKR*
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mRNA from alignment at chr19:360996..365082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=4087bp|location=Sequence derived from alignment at chr19:360996..365082+ (Nannochloropsis oceanica)
CCCACCATTCTTTCTTCGTTCTTCCCCCATTCCTTCCTCTTTGTCTCGCA CTCGTGCTTGCACCCGAACGCAAATCCACCCACACGCACACCAAGACACA GGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATAC GCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAG TATGTGGAGATGCGTGGACGAGTACGTTTACTTCTTCATCACTCTTTCCT CTTTCCGTTCTTTAGTCCCTTCCTTTCCAACTACTTCATCTCTTTTTATC TTGTGGTCCCTCCGCTCGTATCCCTAACCAACGCCCCCTCCTTCTCTCCC CTCCACTCTTCGAACACAGAGCATCGTGGAAGAAGACGTTACCATCCGTG GCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCGGC TCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCTCA ACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCCAGCAGCAGC AGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATGACTAACATA GGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAGAT CGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTGTC GTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCTTT GCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCCAG TGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAGGA AGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGCGT TAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATATCGTGGCTTG TCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATAGTGGAATAT CCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGCAGAGACGGA GAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACAGACGGACTGA GGGAGAGAAAGACAGACAGACAGAGAGACAGAAAGACAGAGAGAAGGGAA AGGGTTGAAGGGGTCCAGAGAGAAAAAAAAGGAAAGAAGCGGAAAAAGGT TAGGAGGAAGATCAAGTGGGGAAAAAACAAACGCACAAATGCAATAGTAA ACTCATAGATGCGCTTCTCGCAGGCTATCATTATGACCATCATCATCATC ACCATAAGTAATGTTATTATCATCATCATCATCCTTCTTGATTCACTACT CCCACTTTCCCCATCCTCTTCCTCCTCCCTTCTCCCCTCCCTGCCCCCCT CCCTCTCTCCCCCTCAAAGCCCTCACCGCAACCATCGTCTGAGCCGGCCC AGCCAGGAAGCCCCTATTTACTCATCCTTCCTTCCCATTCCCCTCTCCTC CTCCTCCACCACCACCACCTCCTCCTCCTCCTCCTCCAAACATTCCCTTC AAAGTCATCTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCATGC CTTCACCGCAACCAGCGTTTGGGCCATCAAATCCTTCGCTGTCTGTATCC TCTCATCATTCATTCCCCTAATCCTTGTCCTGTCCAAGCCCATTACCCGT CGCGCCACCTCCCCCGCATACCCCTCCCTCTGTCCCTTCCTTCCCTCCTT CCCTCCCTTCCTCGACGGCCGGGGGAGGCTTGTCAAGCTCATTTGCACCC ACAAGGCAATAAAGATGGCGAAGAACAGCGTGCGCTCACCGGTACCCCTC CTTTTCTCTCTCCCTCCTACCTTTGCTTTTCCGTTCGATGAGGGAGGGAG GGATGACGAGGTGGGAGCAAGGAAATCACCAGCGAGCTCTCCCTCTTCAA TTTTTTCGAGCAGAAAGAGGAAATATGCTTGACGCTCTTCCTCTGTTCCA GTTGGGAGGGACTGGAGGAGGACGAGGGCAGAAGGGAGGGAGGGAGGGGA AGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGAGCCTGTCCTCTAGGATGG TCCGGAGCAGGGCGGTGACGAGGTCCTTCCCCCTCTCGGTGGACAGAGAG ATGCACCGAGAGATGTGGAGCAAAGACGCGACACCAAGCCTCACATCCTC CTCCTTCACCAAGCCGGCAATTAGGGCAGGGAGGGTGGGCGAGGGCCAAA GGGAAGGGGGGAGAGAGGGCGAGTTGAGGAGGGCGGAGATGCAGGTGCGG AGGGAGGAGGGGCAGTCTGCTTGGATGTATCGGTCAAGAGTGAGGAGGAG GAGGGTGTGGAGGAGGGAGGTGGTGAAAGAGGGGGAAAGGGAGAGAGGGG AGGAGGAGGAGGGAGAGAAGCAGGAGGAGGAGGAGGAGAAGCAGGAGGAG GAGGAGGAGAAGAAGCAGGAGGAGAGGGAGATAAAAAGGTCTCGGAGGTT GCCGGTGGGCGGAATGCTGCTCTTGTCCAGTGCCGGAGGTGGTGGAACCT TGTCCTCCTTCCCGCCTTCCTCCTCTTCATCGTCCTCGTCGTGATCAACG GCGTGGTCTAAGTGGGTTGTGTCTATCGCGCGCCTCAACACAGGGTGGGG GTAGCCCCAGGAGGACGAGGACGAGGAAGGGAGCGAGGACGAAGACGAAA CCAACAAAGGGGAGGTCACATCGCACCCACCTCCTCCCCCGTCCTCCTTC CCTCCCTCTTCCTCGCCCTCCTCCGCTTCCTTTCCTCCCACAAAAACCCC GAATCCCCTGAAGAGTTCCTGGATCAACGCTCCTTCCAATCTCCACCCTC CCTCCTTCCCTCCCTCCCTCCCCTTCATCGGCATCAACTTCCTTAAATTC AAATATGAAGCATGTGCCAAGACAGGGTCAGCGTGCCACGTCATCACCTT CCAAAGGTTGGTGATGAGGAGGGAGGGAGGGGGAAGCTGCTGCGAGGCAA GCCAGCGTGAAGGAGCAAGAAGGGAAAGGAGGTCGGGGAGGGTCCCTTGG TGCTCTGCATCTTCCAGAGCTTCGGCCAGTTTCCCGTACTGCTCGAGAAC ATTCGCGTTCTTATTGTTGCTGCTGCTGTTGCTGATGCTGTTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCGTGCGTTGCCATCCCCTCCCCCTCTC CCTCTGCCGCTCGAAGGAAGAAGAGGGGAAGGCACCACCATGCCTCCCCA TTCCCCCTCCTCCCCATCATCTTCCTGACGCATGGTGAAGACGCTTGTAA GACCCAACCACTCCACAAATTCCTCCCTCTCCATGTCCAGGTCTGACTCC TTGTCCTCCTCCCCTCTTTCCCCGCCATTCCTATAGACGAAGTTACCAAA CCCATTCTTCGTTTTTTTCTTTCCCTGCTTTTCCCTTTCTTTTCCCTTAT CTTGCCTATCTTCCTCCTCCTCCATCTCTCCCTCACTCTCACTACTACTA CTCATACTCAACAACATCTCCTCCGTCTTCACGATCCTGTCAAACGACGA CACTGAAGACACCCTCGTCCCTCCTCCTCCCTCCTCTTCTCCTCCCCCGT CACCCCTTAGATGCTCCAAAGCGCGCTTCTCCTTCTCTTGCTCCTTTATC AAATTACTCAGAGAAAACGTGTCCTTCTTGGTGGCATCGATGGAGGAAAG GGAGAGAGGCACGTAGCTGCTGCTGGTGCTCGTTTTTCGCTTAGCAGAGG CTGCAAGAGGGGCCATAAAATCGGCCAGAAGGTCTTCCTCCTCCTCCTCG AGGCTCATATTGGTCATCTGTACGTTGAGATTGTTTGATATGTCAGTGCT TCGGGCATGGCGGTGGGATAGAAGAAGATAGGGGAGGCATCTGGACTGGG GCGCGACAGTCCTGCTGCTGCAGCTTCTGCCGCCGCCAGTGCTGTCTTTA GAGACCGCAAAATCAGCCCCGCGTTCATTGTCCTCTCCTACTGGGCGGTG CTCATGCTGCTCTGTTGCTTGTGTCATTGCGAGGTCGGGTTGGACGTGGA GAAATGCTCTCTTATCCTTGGGAAGGCAGTAGCGAAG
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Coding sequence (CDS) from alignment at chr19:360996..365082+

>NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr19:360996..365082+ (Nannochloropsis oceanica)
ATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATACGCACTACCACCAA
CTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAGTATGTGGAGATGC
GTGGACGAAGCATCGTGGAAGAAGACGTTACCATCCGTGGCGACCTCGCC
CCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCGGCTCTGTGCTCAG
TCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCTCAACAGCAACAGC
AACAACCACCACAGCCACCACAACCACCCCAGCAGCAGCAGTCAAAACAG
CGATACATCCCTATGACAATCGGCAGCATGACTAACATAGGACCTGATGC
CGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAGATCGGTGCAAACT
GCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTGTCGTCTAGCCCCA
GGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCTTTGCATTAATGAG
TGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCCAGTGTGGTAAGTA
CGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAGGAAGCGGTGGATT
GTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGCGTTAG
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Synonyms
Publications