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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr19 | genome | chr19:360996..365082 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01090.1 vs.
Match: CEM13724.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 143.3 bits (360), Expect = 8.800e-31 Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 0
Query: 9 SEYIRTTT-NYISRKALIEGPQYVEMRGRSIVEEDVTIRGDLAPIRVGHYCFFAAGSVLSPCFIIAPPQYEPQQQQQQPPQPPQPPQQQQSKQRYIPMTIGSMTNIGPDAVIQAASIGSHVEIGANCIVSPRCILKDCCRLAPGTVLPPDSVVPPFALMSGAPAKMVGELPPSVVSTMKEKAQGRYRR 196
SEYI+T + N +SRK+++ G Q +++ GRSI++ V +RGDLA +R+G Y +VL P P ++ + + PM IG IG V+ AA IGS+V+IG NCI+ RC++KD CR+ PGT+LPPD+VVPPF + G P + +GELP SV KE+A YRR
Sbjct: 12 SEYIQTASGNKVSRKSVLCGSQNIQLSGRSIIKPGVILRGDLALLRIGKYVIVGEDTVLRP-----------------------PYKKYRGGFAFFPMAIGDYVTIGDKTVVNAALIGSYVDIGDNCIICKRCVIKDNCRILPGTILPPDTVVPPFTVFGGTPGRCLGELPESVQFVHKERANAYYRR 176
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=3939bp CCCACCATTCTTTCTTCGTTCTTCCCCCATTCCTTCCTCTTTGTCTCGCA CTCGTGCTTGCACCCGAACGCAAATCCACCCACACGCACACCAAGACACA GGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATAC GCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAG TATGTGGAGATGCGTGGACGAAGCATCGTGGAAGAAGACGTTACCATCCG TGGCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCG GCTCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCT CAACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCCAGCAGCA GCAGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATGACTAACA TAGGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAG ATCGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTG TCGTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCT TTGCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCC AGTGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAG GAAGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGC GTTAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATATCGTGGCT TGTCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATAGTGGAAT ATCCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGCAGAGACG GAGAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACAGACGGACT GAGGGAGAGAAAGACAGACAGACAGAGAGACAGAAAGACAGAGAGAAGGG AAAGGGTTGAAGGGGTCCAGAGAGAAAAAAAAGGAAAGAAGCGGAAAAAG GTTAGGAGGAAGATCAAGTGGGGAAAAAACAAACGCACAAATGCAATAGT AAACTCATAGATGCGCTTCTCGCAGGCTATCATTATGACCATCATCATCA TCACCATAAGTAATGTTATTATCATCATCATCATCCTTCTTGATTCACTA CTCCCACTTTCCCCATCCTCTTCCTCCTCCCTTCTCCCCTCCCTGCCCCC CTCCCTCTCTCCCCCTCAAAGCCCTCACCGCAACCATCGTCTGAGCCGGC CCAGCCAGGAAGCCCCTATTTACTCATCCTTCCTTCCCATTCCCCTCTCC TCCTCCTCCACCACCACCACCTCCTCCTCCTCCTCCTCCAAACATTCCCT TCAAAGTCATCTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAT GCCTTCACCGCAACCAGCGTTTGGGCCATCAAATCCTTCGCTGTCTGTAT CCTCTCATCATTCATTCCCCTAATCCTTGTCCTGTCCAAGCCCATTACCC GTCGCGCCACCTCCCCCGCATACCCCTCCCTCTGTCCCTTCCTTCCCTCC TTCCCTCCCTTCCTCGACGGCCGGGGGAGGCTTGTCAAGCTCATTTGCAC CCACAAGGCAATAAAGATGGCGAAGAACAGCGTGCGCTCACCGGTACCCC TCCTTTTCTCTCTCCCTCCTACCTTTGCTTTTCCGTTCGATGAGGGAGGG AGGGATGACGAGGTGGGAGCAAGGAAATCACCAGCGAGCTCTCCCTCTTC AATTTTTTCGAGCAGAAAGAGGAAATATGCTTGACGCTCTTCCTCTGTTC CAGTTGGGAGGGACTGGAGGAGGACGAGGGCAGAAGGGAGGGAGGGAGGG GAAGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGAGCCTGTCCTCTAGGAT GGTCCGGAGCAGGGCGGTGACGAGGTCCTTCCCCCTCTCGGTGGACAGAG AGATGCACCGAGAGATGTGGAGCAAAGACGCGACACCAAGCCTCACATCC TCCTCCTTCACCAAGCCGGCAATTAGGGCAGGGAGGGTGGGCGAGGGCCA AAGGGAAGGGGGGAGAGAGGGCGAGTTGAGGAGGGCGGAGATGCAGGTGC GGAGGGAGGAGGGGCAGTCTGCTTGGATGTATCGGTCAAGAGTGAGGAGG AGGAGGGTGTGGAGGAGGGAGGTGGTGAAAGAGGGGGAAAGGGAGAGAGG GGAGGAGGAGGAGGGAGAGAAGCAGGAGGAGGAGGAGGAGAAGCAGGAGG AGGAGGAGGAGAAGAAGCAGGAGGAGAGGGAGATAAAAAGGTCTCGGAGG TTGCCGGTGGGCGGAATGCTGCTCTTGTCCAGTGCCGGAGGTGGTGGAAC CTTGTCCTCCTTCCCGCCTTCCTCCTCTTCATCGTCCTCGTCGTGATCAA CGGCGTGGTCTAAGTGGGTTGTGTCTATCGCGCGCCTCAACACAGGGTGG GGGTAGCCCCAGGAGGACGAGGACGAGGAAGGGAGCGAGGACGAAGACGA AACCAACAAAGGGGAGGTCACATCGCACCCACCTCCTCCCCCGTCCTCCT TCCCTCCCTCTTCCTCGCCCTCCTCCGCTTCCTTTCCTCCCACAAAAACC CCGAATCCCCTGAAGAGTTCCTGGATCAACGCTCCTTCCAATCTCCACCC TCCCTCCTTCCCTCCCTCCCTCCCCTTCATCGGCATCAACTTCCTTAAAT TCAAATATGAAGCATGTGCCAAGACAGGGTCAGCGTGCCACGTCATCACC TTCCAAAGGTTGGTGATGAGGAGGGAGGGAGGGGGAAGCTGCTGCGAGGC AAGCCAGCGTGAAGGAGCAAGAAGGGAAAGGAGGTCGGGGAGGGTCCCTT GGTGCTCTGCATCTTCCAGAGCTTCGGCCAGTTTCCCGTACTGCTCGAGA ACATTCGCGTTCTTATTGTTGCTGCTGCTGTTGCTGATGCTGTTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCGTGCGTTGCCATCCCCTCCCCCTC TCCCTCTGCCGCTCGAAGGAAGAAGAGGGGAAGGCACCACCATGCCTCCC CATTCCCCCTCCTCCCCATCATCTTCCTGACGCATGGTGAAGACGCTTGT AAGACCCAACCACTCCACAAATTCCTCCCTCTCCATGTCCAGGTCTGACT CCTTGTCCTCCTCCCCTCTTTCCCCGCCATTCCTATAGACGAAGTTACCA AACCCATTCTTCGTTTTTTTCTTTCCCTGCTTTTCCCTTTCTTTTCCCTT ATCTTGCCTATCTTCCTCCTCCTCCATCTCTCCCTCACTCTCACTACTAC TACTCATACTCAACAACATCTCCTCCGTCTTCACGATCCTGTCAAACGAC GACACTGAAGACACCCTCGTCCCTCCTCCTCCCTCCTCTTCTCCTCCCCC GTCACCCCTTAGATGCTCCAAAGCGCGCTTCTCCTTCTCTTGCTCCTTTA TCAAATTACTCAGAGAAAACGTGTCCTTCTTGGTGGCATCGATGGAGGAA AGGGAGAGAGGCACGTAGCTGCTGCTGGTGCTCGTTTTTCGCTTAGCAGA GGCTGCAAGAGGGGCCATAAAATCGGCCAGAAGGTCTTCCTCCTCCTCCT CGAGGCTCATATTGGTCATCTGTACGTTGAGATTGTTTGATATGTCAGTG CTTCGGGCATGGCGGTGGGATAGAAGAAGATAGGGGAGGCATCTGGACTG GGGCGCGACAGTCCTGCTGCTGCAGCTTCTGCCGCCGCCAGTGCTGTCTT TAGAGACCGCAAAATCAGCCCCGCGTTCATTGTCCTCTCCTACTGGGCGG TGCTCATGCTGCTCTGTTGCTTGTGTCATTGCGAGGTCGGGTTGGACGTG GAGAAATGCTCTCTTATCCTTGGGAAGGCAGTAGCGAAG back to topprotein sequence of NO19G01090.1 >NO19G01090.1-protein ID=NO19G01090.1-protein|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp MSSASSASSEYIRTTTNYISRKALIEGPQYVEMRGRSIVEEDVTIRGDLA PIRVGHYCFFAAGSVLSPCFIIAPPQYEPQQQQQQPPQPPQPPQQQQSKQ RYIPMTIGSMTNIGPDAVIQAASIGSHVEIGANCIVSPRCILKDCCRLAP GTVLPPDSVVPPFALMSGAPAKMVGELPPSVVSTMKEKAQGRYRRRKRWI VGEGGSGSSSSKR* back to topmRNA from alignment at chr19:360996..365082+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=4087bp|location=Sequence derived from alignment at chr19:360996..365082+ (Nannochloropsis oceanica) CCCACCATTCTTTCTTCGTTCTTCCCCCATTCCTTCCTCTTTGTCTCGCA
CTCGTGCTTGCACCCGAACGCAAATCCACCCACACGCACACCAAGACACA
GGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATAC
GCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAG
TATGTGGAGATGCGTGGACGAGTACGTTTACTTCTTCATCACTCTTTCCT
CTTTCCGTTCTTTAGTCCCTTCCTTTCCAACTACTTCATCTCTTTTTATC
TTGTGGTCCCTCCGCTCGTATCCCTAACCAACGCCCCCTCCTTCTCTCCC
CTCCACTCTTCGAACACAGAGCATCGTGGAAGAAGACGTTACCATCCGTG
GCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCGGC
TCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCTCA
ACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCCAGCAGCAGC
AGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATGACTAACATA
GGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAGAT
CGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTGTC
GTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCTTT
GCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCCAG
TGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAGGA
AGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGCGT
TAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATATCGTGGCTTG
TCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATAGTGGAATAT
CCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGCAGAGACGGA
GAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACAGACGGACTGA
GGGAGAGAAAGACAGACAGACAGAGAGACAGAAAGACAGAGAGAAGGGAA
AGGGTTGAAGGGGTCCAGAGAGAAAAAAAAGGAAAGAAGCGGAAAAAGGT
TAGGAGGAAGATCAAGTGGGGAAAAAACAAACGCACAAATGCAATAGTAA
ACTCATAGATGCGCTTCTCGCAGGCTATCATTATGACCATCATCATCATC
ACCATAAGTAATGTTATTATCATCATCATCATCCTTCTTGATTCACTACT
CCCACTTTCCCCATCCTCTTCCTCCTCCCTTCTCCCCTCCCTGCCCCCCT
CCCTCTCTCCCCCTCAAAGCCCTCACCGCAACCATCGTCTGAGCCGGCCC
AGCCAGGAAGCCCCTATTTACTCATCCTTCCTTCCCATTCCCCTCTCCTC
CTCCTCCACCACCACCACCTCCTCCTCCTCCTCCTCCAAACATTCCCTTC
AAAGTCATCTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCATGC
CTTCACCGCAACCAGCGTTTGGGCCATCAAATCCTTCGCTGTCTGTATCC
TCTCATCATTCATTCCCCTAATCCTTGTCCTGTCCAAGCCCATTACCCGT
CGCGCCACCTCCCCCGCATACCCCTCCCTCTGTCCCTTCCTTCCCTCCTT
CCCTCCCTTCCTCGACGGCCGGGGGAGGCTTGTCAAGCTCATTTGCACCC
ACAAGGCAATAAAGATGGCGAAGAACAGCGTGCGCTCACCGGTACCCCTC
CTTTTCTCTCTCCCTCCTACCTTTGCTTTTCCGTTCGATGAGGGAGGGAG
GGATGACGAGGTGGGAGCAAGGAAATCACCAGCGAGCTCTCCCTCTTCAA
TTTTTTCGAGCAGAAAGAGGAAATATGCTTGACGCTCTTCCTCTGTTCCA
GTTGGGAGGGACTGGAGGAGGACGAGGGCAGAAGGGAGGGAGGGAGGGGA
AGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGAGCCTGTCCTCTAGGATGG
TCCGGAGCAGGGCGGTGACGAGGTCCTTCCCCCTCTCGGTGGACAGAGAG
ATGCACCGAGAGATGTGGAGCAAAGACGCGACACCAAGCCTCACATCCTC
CTCCTTCACCAAGCCGGCAATTAGGGCAGGGAGGGTGGGCGAGGGCCAAA
GGGAAGGGGGGAGAGAGGGCGAGTTGAGGAGGGCGGAGATGCAGGTGCGG
AGGGAGGAGGGGCAGTCTGCTTGGATGTATCGGTCAAGAGTGAGGAGGAG
GAGGGTGTGGAGGAGGGAGGTGGTGAAAGAGGGGGAAAGGGAGAGAGGGG
AGGAGGAGGAGGGAGAGAAGCAGGAGGAGGAGGAGGAGAAGCAGGAGGAG
GAGGAGGAGAAGAAGCAGGAGGAGAGGGAGATAAAAAGGTCTCGGAGGTT
GCCGGTGGGCGGAATGCTGCTCTTGTCCAGTGCCGGAGGTGGTGGAACCT
TGTCCTCCTTCCCGCCTTCCTCCTCTTCATCGTCCTCGTCGTGATCAACG
GCGTGGTCTAAGTGGGTTGTGTCTATCGCGCGCCTCAACACAGGGTGGGG
GTAGCCCCAGGAGGACGAGGACGAGGAAGGGAGCGAGGACGAAGACGAAA
CCAACAAAGGGGAGGTCACATCGCACCCACCTCCTCCCCCGTCCTCCTTC
CCTCCCTCTTCCTCGCCCTCCTCCGCTTCCTTTCCTCCCACAAAAACCCC
GAATCCCCTGAAGAGTTCCTGGATCAACGCTCCTTCCAATCTCCACCCTC
CCTCCTTCCCTCCCTCCCTCCCCTTCATCGGCATCAACTTCCTTAAATTC
AAATATGAAGCATGTGCCAAGACAGGGTCAGCGTGCCACGTCATCACCTT
CCAAAGGTTGGTGATGAGGAGGGAGGGAGGGGGAAGCTGCTGCGAGGCAA
GCCAGCGTGAAGGAGCAAGAAGGGAAAGGAGGTCGGGGAGGGTCCCTTGG
TGCTCTGCATCTTCCAGAGCTTCGGCCAGTTTCCCGTACTGCTCGAGAAC
ATTCGCGTTCTTATTGTTGCTGCTGCTGTTGCTGATGCTGTTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCGTGCGTTGCCATCCCCTCCCCCTCTC
CCTCTGCCGCTCGAAGGAAGAAGAGGGGAAGGCACCACCATGCCTCCCCA
TTCCCCCTCCTCCCCATCATCTTCCTGACGCATGGTGAAGACGCTTGTAA
GACCCAACCACTCCACAAATTCCTCCCTCTCCATGTCCAGGTCTGACTCC
TTGTCCTCCTCCCCTCTTTCCCCGCCATTCCTATAGACGAAGTTACCAAA
CCCATTCTTCGTTTTTTTCTTTCCCTGCTTTTCCCTTTCTTTTCCCTTAT
CTTGCCTATCTTCCTCCTCCTCCATCTCTCCCTCACTCTCACTACTACTA
CTCATACTCAACAACATCTCCTCCGTCTTCACGATCCTGTCAAACGACGA
CACTGAAGACACCCTCGTCCCTCCTCCTCCCTCCTCTTCTCCTCCCCCGT
CACCCCTTAGATGCTCCAAAGCGCGCTTCTCCTTCTCTTGCTCCTTTATC
AAATTACTCAGAGAAAACGTGTCCTTCTTGGTGGCATCGATGGAGGAAAG
GGAGAGAGGCACGTAGCTGCTGCTGGTGCTCGTTTTTCGCTTAGCAGAGG
CTGCAAGAGGGGCCATAAAATCGGCCAGAAGGTCTTCCTCCTCCTCCTCG
AGGCTCATATTGGTCATCTGTACGTTGAGATTGTTTGATATGTCAGTGCT
TCGGGCATGGCGGTGGGATAGAAGAAGATAGGGGAGGCATCTGGACTGGG
GCGCGACAGTCCTGCTGCTGCAGCTTCTGCCGCCGCCAGTGCTGTCTTTA
GAGACCGCAAAATCAGCCCCGCGTTCATTGTCCTCTCCTACTGGGCGGTG
CTCATGCTGCTCTGTTGCTTGTGTCATTGCGAGGTCGGGTTGGACGTGGA
GAAATGCTCTCTTATCCTTGGGAAGGCAGTAGCGAAG back to topCoding sequence (CDS) from alignment at chr19:360996..365082+ >NO19G01090.1 ID=NO19G01090.1|Name=NO19G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr19:360996..365082+ (Nannochloropsis oceanica) ATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATACGCACTACCACCAA CTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAGTATGTGGAGATGC GTGGACGAAGCATCGTGGAAGAAGACGTTACCATCCGTGGCGACCTCGCC CCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCGGCTCTGTGCTCAG TCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCTCAACAGCAACAGC AACAACCACCACAGCCACCACAACCACCCCAGCAGCAGCAGTCAAAACAG CGATACATCCCTATGACAATCGGCAGCATGACTAACATAGGACCTGATGC CGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAGATCGGTGCAAACT GCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTGTCGTCTAGCCCCA GGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCTTTGCATTAATGAG TGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCCAGTGTGGTAAGTA CGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAGGAAGCGGTGGATT GTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGCGTTAG back to top
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