NO19G01060.1, NO19G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01060.1
Unique NameNO19G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr19:354334..356768 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:354334..356768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01060.1 vs.
Match: EWM23609.1 (Protein of unknown function DUF775 [Nannochloropsis gaditana])

HSP 1 Score: 321.2 bits (822), Expect = 2.000e-84
Identity = 150/182 (82.42%), Postives = 166/182 (91.21%), Query Frame = 0 
Query:    1 MASFGVVVPGRAVVIDWRPIDNAKFVTEIAAPAQVSDLTFFLLPNIVLPDGAGVVLYYSLPPFTEWSVLGALTLEKPSGVFRTGWSTIEGISQMPVIQLGVSLESLDTVSNLELQTSGVDERRLFAHKIAQDLWSFVCSFAQRTQQAGQEVVLLPVNAMDLWLEKFDRKYRLDPSFMFKAGS 183
            MASFGVV PGR V++DWRPI+  KFV EIA+PAQV+DLTFFLLPNIVLP G G  LYYSLPPF EW+VLGALTL+KPSGVFRTGWSTIEGI+QMP IQLGVSLESLDT++NL+LQ SGVDERRLFAHKIAQDLWSFVCSFAQ+TQQ G+E VLLP NAMD+WLE+FDRKYRLDPSFMFK G+
Sbjct:    1 MASFGVVCPGRPVMVDWRPINETKFVCEIASPAQVTDLTFFLLPNIVLPPGTGTALYYSLPPFAEWTVLGALTLDKPSGVFRTGWSTIEGIAQMPAIQLGVSLESLDTITNLDLQKSGVDERRLFAHKIAQDLWSFVCSFAQQTQQGGREAVLLPANAMDMWLERFDRKYRLDPSFMFKTGN 182
The following BLAST results are available for this feature:
BLAST of NO19G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23609.12.000e-8482.42Protein of unknown function DUF775 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01060NO19G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01060.1NO19G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01060.1.cds1NO19G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01060.1.cds2NO19G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01060.1.cds3NO19G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01060.1.cds4NO19G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01060.1 ID=NO19G01060.1|Name=NO19G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
TGTAAAAAGCTGCAAAATTGAACGCATCATGCCGGCTCCTTTCAATCATT
GCGTATGAAATCGTAATTACGGTCACTTTTCACTTCAATTCACGTATCTA
CAATATTTATTCACAACTTTCCCCCTGCTACACTGTCTTCTTCCTCTTCA
GGCATGATAGGTCTCATGCGGTTTGATCGGCGGATGCTTTGGTTGGGCCA
CATGCATGTGCTTATCCTTTTTCTTTCCCTTCCTACCCTTTCCTCCTCTC
CCTCCAGCTTTGCCCATCTCTCCTCGTTCTCCACCCTTCTCCTCATCCCC
ATCATCACTCTCACTCTCGCTCTCACTCGAACTTTCCCCAAACGCCCGCT
TCTTATGAAATATACAGCATCTTTTACTGCTCTTCTTGTTCATATGCTCA
TTGTCTATCACTTTCTCGTCCCACTTCACGTGCGGCCGTGGGTGCAGCCG
CAATCGCAGCACTCCTCCCTCCCCTTCCTTGGCGGCTGCCTTGTCTTCCA
CCACCGTCGCCGAGCCCGTCGAGCTTGGTTTTGCTTGCATATGCCCACCT
CTTCCTCCCACCACTCCGATGCTACCACTGCCCCTGCCACCGCCGTTGGG
GCTGGTGGGGCCACCGCTGTTCTTGGCTTCCATTTTGATCGTGTGATGCT
GCTGCCTGCTTTGTGAGGAGAAAGGGAGGATGGCGCAGGGAGGGGAGCAG
GTGTCGGAAAAGCGGCTTGACAACCATCAAGCAGTGTGCGTGCTTGCACA
TCACTTACGAAGGGGCGCTATGAGTGTATGTGTTGTGTGTGCACGCGTCG
TGGTGATAGGACACATGGCTTCTCACTGTTGGAGCCCCTGAAGCTCCTCA
CTCATCGCCCAAAGAAGCCCGCCTGCCCACGATCATTCCTCACATTCTAC
CCAATACCAAGCACAGGTAAGCCAAAAAGGTCGTCCAGTACTAAGAGGAC
ATTAAAAGCTTTCCGCAACGCACCCGTCACGTGCAACAACGTCTCGTTTT
CCTGCTTCGAGAGAGCAAGGAAACTACAGGAAAAAGAATTAACCTCCCTT
GGAACTTTCTATATTACCTCGTTACCCCGAAGCCTCAGGCAGTAGCCCTG
GTCGCAGTAGGTGAAAGAGCAGAGTCCAGAAATGGCATCGTTTGGAGTGG
TCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCGCCCTATCGACAACGCC
AAGTTCGTAACCGAAATAGCCGCTCCCGCACAAGTAAGCGATTTGACCTT
CTTCCTTCTTCCCAACATTGTCTTGCCTGATGGTGCCGGGGTGGTGCTTT
ATTACTCGCTTCCGCCGTTTACGGAGTGGAGCGTGCTGGGAGCTTTGACG
TTGGAGAAACCGAGTGGCGTCTTCCGGACAGGGTGGTCCACGATCGAGGG
TATCAGCCAGATGCCCGTTATTCAGCTTGGGGTCTCCTTAGAAAGCCTCG
ACACAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAACGGCGG
CTGTTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGCTCCTT
CGCTCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACCCGTGA
ACGCTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCCTTGAT
CCGTCGTTTATGTTCAAGGCCGGGAGTTAGTTTTAGGAAGGGGAGGGAGG
GAGGGAGGAGG
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protein sequence of NO19G01060.1

>NO19G01060.1-protein ID=NO19G01060.1-protein|Name=NO19G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MASFGVVVPGRAVVIDWRPIDNAKFVTEIAAPAQVSDLTFFLLPNIVLPD
GAGVVLYYSLPPFTEWSVLGALTLEKPSGVFRTGWSTIEGISQMPVIQLG
VSLESLDTVSNLELQTSGVDERRLFAHKIAQDLWSFVCSFAQRTQQAGQE
VVLLPVNAMDLWLEKFDRKYRLDPSFMFKAGS*
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mRNA from alignment at chr19:354334..356768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01060.1 ID=NO19G01060.1|Name=NO19G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2435bp|location=Sequence derived from alignment at chr19:354334..356768- (Nannochloropsis oceanica)
TGTAAAAAGCTGCAAAATTGAACGCATCATGCCGGCTCCTTTCAATCATT
GCGTATGAAATCGTAATTACGGTCACTTTTCACTTCAATTCACGTATCTA
CAATATTTATTCACAACTTTCCCCCTGCTACACTGTCTTCTTCCTCTTCA
GGCATGATAGGTCTCATGCGGTTTGATCGGCGGATGCTTTGGTTGGGCCA
CATGCATGTGCTTATCCTTTTTCTTTCCCTTCCTACCCTTTCCTCCTCTC
CCTCCAGCTTTGCCCATCTCTCCTCGTTCTCCACCCTTCTCCTCATCCCC
ATCATCACTCTCACTCTCGCTCTCACTCGAACTTTCCCCAAACGCCCGCT
TCTTATGAAATATACAGCATCTTTTACTGCTCTTCTTGTTCATATGCTCA
TTGTCTATCACTTTCTCGTCCCACTTCACGTGCGGCCGTGGGTGCAGCCG
CAATCGCAGCACTCCTCCCTCCCCTTCCTTGGCGGCTGCCTTGTCTTCCA
CCACCGTCGCCGAGCCCGTCGAGCTTGGTTTTGCTTGCATATGCCCACCT
CTTCCTCCCACCACTCCGATGCTACCACTGCCCCTGCCACCGCCGTTGGG
GCTGGTGGGGCCACCGCTGTTCTTGGCTTCCATTTTGATCGTGTGATGCT
GCTGCCTGCTTTGTGAGGAGAAAGGGAGGATGGCGCAGGGAGGGGAGCAG
GTGTCGGAAAAGCGGCTTGACAACCATCAAGCAGTGTGCGTGCTTGCACA
TCACTTACGAAGGGGCGCTATGAGTGTATGTGTTGTGTGTGCACGCGTCG
TGGTGATAGGACACATGGCTTCTCACTGTTGGAGCCCCTGAAGCTCCTCA
CTCATCGCCCAAAGAAGCCCGCCTGCCCACGATCATTCCTCACATTCTAC
CCAATACCAAGCACAGGTAAGCCAAAAAGGTCGTCCAGTACTAAGAGGAC
ATTAAAAGCTTTCCGCAACGCACCCGTCACGTGCAACAACGTCTCGTTTT
CCTGCTTCGAGAGAGCAAGGAAACTACAGGAAAAAGAATTAACCTCCCTT
GGAACTTTCTATATTACCTCGTTACCCCGAAGCCTCAGGCAGTAGCCCTG
GTCGCAGTAGGTGAAAGAGCAGAGTCCAGAAATGGCATCGTTTGGAGTGG
TCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCGGTGAGTTGTATCCGGA
AGCCGCTCTCCCTCCCACCCCTCTTACTCAATGCCTCCCCACCCAAGCCT
CCTGCCTGACCCTACCAACGCACTTTGCGGATAAAAAAAGTGACCACAGC
ACGCCCAATGTAACGCATTATGGCATCGAATCGCTCCCTGTTTCGGCCGC
CACCATTTTTCGTTTTCATAAGCACCTTATCCTCACTACCCCTTCCACGT
ACCCCCTCCGCCCCTCCCTCCCTCCCACTCAGCCCTATCGACAACGCCAA
GTTCGTAACCGAAATAGCCGCTCCCGCACAAGTAAGCGATTTGACCTTCT
TCCTTCTTCCCAACATTGTCTTGCCTGATGGTGCCGGGGTGGTGCTTTAT
TACTCGCTTCCGCCGTTTACGGAGTGGAGCGTGCTGGGAGCTTTGACGTT
GGAGAAACCGAGGTAAGGAAGGAGGGAGGGATGAATTGGGGGAAATTAAA
AGAGTGAGTAGAGGAATGTTTTTTTCTCTTCTTTTGACTCTCACCCCAAG
TTGAGTTGTCTCACGGGTCGGTGTGCGGTGTTTTCTTCCTTCTTTCCCCT
CTCCAACAGTGGCGTCTTCCGGACAGGGTGGTCCACGATCGAGGGTATCA
GCCAGATGCCCGTTATTCAGCTTGGGGTCTCCTTAGAAAGGTACACCCTG
CCTCTCTCTTCTTCCTATCTTCCCTCCATCGGCTCCTCCTACCCTCCCTG
CTTCAGGGGTGGATAATGTTTGTACCGAAATGACCTAGTAGTTGCACTCC
TCCCCCGCCCCCCTTCCCTCCCCCTCCCCTCCCTCATTTACTTCTAATTG
TAAGCATACCACCTGAACCATCCAGTGGCTAAGACTCATTGGCATCGCCA
TTTATGGACGGCGCCCACCCTTTTCCTGCTTTCCCTTCATGTTTTATCGT
TCATCGTCCACTGACTGCTTAACTCAAACCCCCTCCGTTCCACCTGCCAT
GCCTTTGTCCCTCTCTCAGCCTCGACACAGTTTCAAACCTGGAGCTCCAA
ACATCCGGAGTGGATGAACGGCGGCTGTTTGCTCACAAAATTGCTCAAGA
CCTGTGGTCCTTTGTCTGCTCCTTCGCTCAGCGGACCCAACAGGCAGGGC
AGGAGGTTGTGTTGCTACCCGTGAACGCTATGGATTTGTGGTTGGAGAAA
TTCGATCGGAAATATCGCCTTGATCCGTCGTTTATGTTCAAGGCCGGGAG
TTAGTTTTAGGAAGGGGAGGGAGGGAGGGAGGAGG
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Coding sequence (CDS) from alignment at chr19:354334..356768-

>NO19G01060.1 ID=NO19G01060.1|Name=NO19G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr19:354334..356768- (Nannochloropsis oceanica)
ATGGCATCGTTTGGAGTGGTCGTGCCAGGCCGGGCTGTTGTCATCGACTG
GCGCCCTATCGACAACGCCAAGTTCGTAACCGAAATAGCCGCTCCCGCAC
AAGTAAGCGATTTGACCTTCTTCCTTCTTCCCAACATTGTCTTGCCTGAT
GGTGCCGGGGTGGTGCTTTATTACTCGCTTCCGCCGTTTACGGAGTGGAG
CGTGCTGGGAGCTTTGACGTTGGAGAAACCGAGTGGCGTCTTCCGGACAG
GGTGGTCCACGATCGAGGGTATCAGCCAGATGCCCGTTATTCAGCTTGGG
GTCTCCTTAGAAAGCCTCGACACAGTTTCAAACCTGGAGCTCCAAACATC
CGGAGTGGATGAACGGCGGCTGTTTGCTCACAAAATTGCTCAAGACCTGT
GGTCCTTTGTCTGCTCCTTCGCTCAGCGGACCCAACAGGCAGGGCAGGAG
GTTGTGTTGCTACCCGTGAACGCTATGGATTTGTGGTTGGAGAAATTCGA
TCGGAAATATCGCCTTGATCCGTCGTTTATGTTCAAGGCCGGGAGTTAG
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Synonyms
Publications