NO19G01020.1, NO19G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01020.1
Unique NameNO19G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length903
Alignment locationchr19:345609..346906 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:345609..346906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01020.1 vs.
Match: CBJ26696.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.4 bits (381), Expect = 4.600e-33
Identity = 87/197 (44.16%), Postives = 122/197 (61.93%), Query Frame = 0 
Query:   63 FTLLKEADLYRGKWRSIMQRDVRYPDGREVSFDIMDQPGSSVLVFAWNSTSHTTTLIEEYAPGSLQVITGPVAGGCEDDKHEDPGHAAVLELEEEAHLIGGRWYSLLEEGGREGGREGGVQGAPADKYSSTFFNFYLVVDPEREEEGRVRGRDEEELLVVHRGVGEGEVRRLIREGRMTVPAACASLLALEKLRELG 260
            +  + E+  Y+G WRSI++R +R P G+  S+D++ Q   SVLVF W++ ++TTT+++EY PG  +++ G V G  E DKH     AA  ELEEEAHL  G WY+L+++       E  V G  A KYS+  F  YLVVDP    +G  RG D+ E +   RGV   EVR +I  G M+V +  A+L+A+EKLRELG
Sbjct:   80 YECISESPAYKG-WRSILRRRIRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKD-------ERTVAG--AGKYSTQVFYSYLVVDP--VVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELG 264
The following BLAST results are available for this feature:
BLAST of NO19G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26696.14.600e-3344.16conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01020NO19G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01020.1NO19G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01020.1.cds1NO19G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01020.1.cds2NO19G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01020.1.cds3NO19G01020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01020.1 ID=NO19G01020.1|Name=NO19G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
ATGCCATCCCATTTCAGCCGCTTAAGCCTCCTTCTCCTCGCCTCAGCGAC
AACCTTCTTCTTGTCTTCTGGCTCTGCCTCTCCATTCCCCTTCTCTTCAT
TCTCAAGGGCTCGGTGGGTTGCGCTTGTCCGTGGCGGTGATGGTGGCGGC
CCTCCCGGCATCACGCCGGGCTTGGACAAGAGGGACTTTACATTGCTGAA
AGAAGCAGATCTCTACCGTGGAAAGTGGCGTTCGATCATGCAACGCGATG
TGCGTTACCCCGATGGTCGTGAGGTTTCCTTCGACATCATGGATCAGCCT
GGGAGTAGCGTGCTGGTGTTTGCATGGAATAGCACCAGCCATACCACGAC
TTTAATTGAGGAATACGCACCTGGATCGTTGCAGGTGATTACTGGTCCTG
TGGCGGGTGGGTGTGAGGACGACAAACACGAGGACCCCGGGCACGCGGCC
GTGCTGGAGCTGGAAGAAGAAGCGCATTTAATAGGAGGAAGATGGTACTC
GCTCCTGGAGGAGGGAGGGCGGGAGGGAGGGAGGGAGGGAGGGGTACAGG
GAGCACCTGCAGATAAATATAGTAGCACCTTCTTCAACTTCTATTTGGTC
GTAGATCCGGAGAGGGAGGAGGAGGGGAGGGTGCGGGGAAGGGATGAGGA
GGAACTGCTTGTTGTGCATCGCGGGGTTGGAGAGGGGGAGGTACGGAGGT
TGATACGGGAGGGAAGGATGACGGTCCCTGCTGCCTGCGCCTCTTTGTTG
GCATTGGAGAAACTACGGGAATTGGGGTTGTTGAAGGCGGGGGAAGGGAG
GGAGGAAGGGAGGGAGAGGGCGGGAGGGGAGGAGGAGAAGAAGAAGAAGA
AGGAGGCGTGGATGTCAACGGTCAGGGGGGGGGACAGGGAGGGAGGGAGG
TAG
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protein sequence of NO19G01020.1

>NO19G01020.1-protein ID=NO19G01020.1-protein|Name=NO19G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MPSHFSRLSLLLLASATTFFLSSGSASPFPFSSFSRARWVALVRGGDGGG
PPGITPGLDKRDFTLLKEADLYRGKWRSIMQRDVRYPDGREVSFDIMDQP
GSSVLVFAWNSTSHTTTLIEEYAPGSLQVITGPVAGGCEDDKHEDPGHAA
VLELEEEAHLIGGRWYSLLEEGGREGGREGGVQGAPADKYSSTFFNFYLV
VDPEREEEGRVRGRDEEELLVVHRGVGEGEVRRLIREGRMTVPAACASLL
ALEKLRELGLLKAGEGREEGRERAGGEEEKKKKKEAWMSTVRGGDREGGR
*
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mRNA from alignment at chr19:345609..346906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01020.1 ID=NO19G01020.1|Name=NO19G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at chr19:345609..346906- (Nannochloropsis oceanica)
ATGCCATCCCATTTCAGCCGCTTAAGCCTCCTTCTCCTCGCCTCAGCGAC
AACCTTCTTCTTGTCTTCTGGCTCTGCCTCTCCATTCCCCTTCTCTTCAT
TCTCAAGGGCTCGGTGGGTTGCGCTTGTCCGTGGCGGTGATGGTGGCGGC
CCTCCCGGCATCACGCCGGGCTTGGACAAGAGGGACTTTACATTGCTGAA
AGAAGCAGATCTCTACCGTGGAAAGTGGTACGTAAGTATGAGATAGGACA
AAAAAGAGATATGAGAAAAGAAATGTTTGTGCTATAGCAAGGAGGAATGC
CTACTCATAGCCTCCCCTCCCTGTCTACCTGCCTCCCTCCTCCCTCGCTC
TGTCCCCTCCCACTTTGACCTCCCTTTCTCTTTCCCCCTCCTCCCTTCAT
TCACAAGGCGTTCGATCATGCAACGCGATGTGCGTTACCCCGATGGTCGT
GAGGTTTCCTTCGACATCATGGATCAGCCTGGGAGTAGCGTGCTGGTGTT
TGCATGGAATAGCACCAGCCATACCACGACTTTAATTGAGGAATACGCAC
CTGGATCGTTGCAGGTAGGATTATTTCGATTGAAATCGATGCTATTCTCG
ATATTGTTACGATTAGATTGCGTATGTATGCTTCTTGATGAGGGTCTCCT
CCTGTGGGTATGAAAGCGCGGGGATGCAGTGTCTCGGGGTGGTGCTGTGA
GACACACAATATCACACTAACTCTCTCGTCTCGCATCCTCCCTCCCTGCT
TCACTTTCCTCTTTCATTCGCCCACGCAGGTGATTACTGGTCCTGTGGCG
GGTGGGTGTGAGGACGACAAACACGAGGACCCCGGGCACGCGGCCGTGCT
GGAGCTGGAAGAAGAAGCGCATTTAATAGGAGGAAGATGGTACTCGCTCC
TGGAGGAGGGAGGGCGGGAGGGAGGGAGGGAGGGAGGGGTACAGGGAGCA
CCTGCAGATAAATATAGTAGCACCTTCTTCAACTTCTATTTGGTCGTAGA
TCCGGAGAGGGAGGAGGAGGGGAGGGTGCGGGGAAGGGATGAGGAGGAAC
TGCTTGTTGTGCATCGCGGGGTTGGAGAGGGGGAGGTACGGAGGTTGATA
CGGGAGGGAAGGATGACGGTCCCTGCTGCCTGCGCCTCTTTGTTGGCATT
GGAGAAACTACGGGAATTGGGGTTGTTGAAGGCGGGGGAAGGGAGGGAGG
AAGGGAGGGAGAGGGCGGGAGGGGAGGAGGAGAAGAAGAAGAAGAAGGAG
GCGTGGATGTCAACGGTCAGGGGGGGGGACAGGGAGGGAGGGAGGTAG
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Coding sequence (CDS) from alignment at chr19:345609..346906-

>NO19G01020.1 ID=NO19G01020.1|Name=NO19G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr19:345609..346906- (Nannochloropsis oceanica)
ATGCCATCCCATTTCAGCCGCTTAAGCCTCCTTCTCCTCGCCTCAGCGAC
AACCTTCTTCTTGTCTTCTGGCTCTGCCTCTCCATTCCCCTTCTCTTCAT
TCTCAAGGGCTCGGTGGGTTGCGCTTGTCCGTGGCGGTGATGGTGGCGGC
CCTCCCGGCATCACGCCGGGCTTGGACAAGAGGGACTTTACATTGCTGAA
AGAAGCAGATCTCTACCGTGGAAAGTGGCGTTCGATCATGCAACGCGATG
TGCGTTACCCCGATGGTCGTGAGGTTTCCTTCGACATCATGGATCAGCCT
GGGAGTAGCGTGCTGGTGTTTGCATGGAATAGCACCAGCCATACCACGAC
TTTAATTGAGGAATACGCACCTGGATCGTTGCAGGTGATTACTGGTCCTG
TGGCGGGTGGGTGTGAGGACGACAAACACGAGGACCCCGGGCACGCGGCC
GTGCTGGAGCTGGAAGAAGAAGCGCATTTAATAGGAGGAAGATGGTACTC
GCTCCTGGAGGAGGGAGGGCGGGAGGGAGGGAGGGAGGGAGGGGTACAGG
GAGCACCTGCAGATAAATATAGTAGCACCTTCTTCAACTTCTATTTGGTC
GTAGATCCGGAGAGGGAGGAGGAGGGGAGGGTGCGGGGAAGGGATGAGGA
GGAACTGCTTGTTGTGCATCGCGGGGTTGGAGAGGGGGAGGTACGGAGGT
TGATACGGGAGGGAAGGATGACGGTCCCTGCTGCCTGCGCCTCTTTGTTG
GCATTGGAGAAACTACGGGAATTGGGGTTGTTGAAGGCGGGGGAAGGGAG
GGAGGAAGGGAGGGAGAGGGCGGGAGGGGAGGAGGAGAAGAAGAAGAAGA
AGGAGGCGTGGATGTCAACGGTCAGGGGGGGGGACAGGGAGGGAGGGAGG
TAG
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Synonyms
Publications