NO19G00970.1, NO19G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00970.1
Unique NameNO19G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1785
Alignment locationchr19:325373..327157 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:325373..327157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00970.1 vs.
Match: EWM23603.1 (dual specificity protein phosphatase 10 [Nannochloropsis gaditana]; EWM23604.1 dual specificity protein phosphatase 10 [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 3.600e-114
Identity = 265/486 (54.53%), Postives = 322/486 (66.26%), Query Frame = 0 
Query:  135 QQQPHGGREEDEDDDSGDEDNDCSSTSNNTSPCL--------------------PPSGRTPTFAFFKRSNSALATLVGMNNNGSHSTSTPPSHGIIADNIK-KKRGFPNLILTPKGNSSHPS-SILPPRALPPLTGSGS--GANNGSSSS-----KGVSSSTSLMSSLFRLRRRA-TISVEDDPCPSSLPPSGNCTSSAAATPSKKSN------VNSKNGNRKLVLETGLRACSSIGPPSLSTMDFQYDGSKILDYLYVGGEHIPSQDALAETFNITHIVNTTMKDYYPHHPYGQGDYCQLYLLDSLSEELTNEKLETAFDMVERARAGGHACLVHCRNGMSRSTSVVIAYLMKYYKMPLLEAFSFVRERRPCTSPNPSFMRQLARLEREWNGGGRNSLDVEHYADDRFACIRKLAV---KDEEEEEEEEEEEDEGENERGKEGEGLGLEVECEKEEEVEDVGCPLSSGDKCSRGNVNEGEVEVER 582
            QQ+  GG   +  +   D  N  SS S+ +S C                     P + +  TF FFKRSNSA + L+ +  + + S  TPP+       +K KKRGFP LILTP+GNSSHP+ S+LPPR LPPL  S S  G ++GS S+     K +SS  SL++ + RLRRR    ++E+  C SS   + + +SS   TP + S+       +  +  R L ++TG R  S  GP +LSTMDF YDGSKILDYLYVGGEHIPSQDALAETFNITHIVNTT+KDYYPHHP  +GDYCQL+LLD+LSEEL+  K+ETAF M++RARAGGHACLVHCRNGMSRSTSVVIAYLM+++KMPLLEAF+FVRERRPCTSPNPSFMRQLA  ER W G   N+LDV+HYADDRFA IR LAV   +  EEEE  EEEE+E E    +EG   GLEV  E      DVGCPL SG++       EGE EV +
Sbjct:   86 QQEGQGGNPSNPTESVEDARNRSSSQSSGSSACRKICTEGLEEDKEKAAETASPPLTSKRSTFGFFKRSNSASSALMDLPVDNTLSAGTPPASSYRCPGLKVKKRGFPALILTPRGNSSHPATSLLPPRPLPPLPPSRSVNGTHSGSISTPNGGGKPLSSPPSLLNLMARLRRRQPATAIEETSCCSSSTSTSSSSSSIIMTPGEISSREDPTAASRSSSRRVLTVDTGPRCSSVSGPMALSTMDFHYDGSKILDYLYVGGEHIPSQDALAETFNITHIVNTTVKDYYPHHPVSRGDYCQLFLLDALSEELSETKMETAFQMIDRARAGGHACLVHCRNGMSRSTSVVIAYLMRHFKMPLLEAFNFVRERRPCTSPNPSFMRQLAAFERAWLGVSGNTLDVDHYADDRFASIRDLAVGPGRGGEEEEVVEEEEEEEE----EEGRLAGLEVGEEDSSGGWDVGCPL-SGEEGQGWAEGEGEEEVSK 566
The following BLAST results are available for this feature:
BLAST of NO19G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23603.13.600e-11454.53dual specificity protein phosphatase 10 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00970NO19G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00970.1NO19G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00970.1.cds1NO19G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00970.1 ID=NO19G00970.1|Name=NO19G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
ATGCTTTTCGCAGGCCTCTCTGGGAGGATCAACACGAGCAGTCACAACCG
CGCCGAAAGCCTGGACCACGATGACCCAAGTACCACGCAAGACCCTTGCA
CCATTCTCAGCCCGTGCGCTCTGTCCTCCTCCTCCACCAAGGGTCTTGCC
TCGGCCTCTTCCTCTTCCTCACTAGCAGGCTCGGGCCCATCTTCCCCTCC
CTGCGCTATCCCACGACACGGCCTTGACGCCGTTAACGGTGGCCTTCCCA
ATGTTCGAGGGAGCGTGACCCCGACACAGCACAGTAGTAGGAGCAGTCGC
AGCAGTAGCAGCAGCAGCACGACCAGAAGCGCAAGAAGTCTGACGCTGGG
CGTCTCCGTGGATGACCAAGAAGTGATGCTTAGACCAACAGGCAGACAGC
AGCAGCAGCAACCGCACGGAGGACGAGAAGAAGACGAGGACGACGACAGC
GGAGATGAGGATAACGACTGCAGTAGCACCAGCAACAATACCAGCCCTTG
CCTTCCACCATCAGGACGCACCCCCACCTTCGCCTTCTTCAAGCGCTCCA
ACTCGGCCTTGGCCACCCTAGTAGGGATGAACAATAATGGGTCGCATTCC
ACCTCTACGCCCCCATCTCACGGCATCATAGCTGACAATATAAAAAAAAA
GCGCGGCTTTCCAAACCTTATTCTGACTCCCAAGGGTAACTCCTCCCACC
CCTCCTCTATACTGCCCCCCCGCGCCTTGCCCCCCCTCACTGGCAGCGGC
AGCGGCGCCAATAACGGCAGCAGCAGCAGCAAAGGAGTCTCGTCATCTAC
CTCCCTAATGAGTTCACTTTTTCGTCTCCGCCGCCGGGCCACGATTTCTG
TCGAAGATGATCCTTGCCCATCGTCCCTTCCCCCCTCGGGCAACTGCACC
AGCAGTGCTGCCGCAACCCCAAGCAAGAAGAGCAACGTCAACAGCAAGAA
CGGAAACAGGAAATTAGTATTGGAGACAGGTCTGCGGGCATGTAGTTCCA
TTGGCCCCCCATCCCTAAGCACGATGGACTTCCAATATGATGGGAGCAAG
ATACTCGATTACCTGTATGTGGGTGGGGAGCACATTCCGAGCCAGGATGC
CCTTGCGGAGACCTTCAACATAACCCACATCGTCAACACGACCATGAAGG
ATTACTACCCTCACCATCCGTACGGGCAGGGGGACTATTGCCAGCTGTAT
TTGCTGGACTCCTTGTCGGAGGAGCTGACAAACGAGAAGTTGGAGACTGC
CTTCGACATGGTGGAGAGGGCGAGGGCAGGGGGGCATGCCTGCCTGGTAC
ACTGCCGGAACGGAATGAGTCGATCGACGTCGGTAGTCATTGCATATCTA
ATGAAGTACTACAAGATGCCCTTGTTGGAGGCCTTTAGTTTTGTGCGGGA
ACGGAGGCCATGCACGAGTCCGAACCCGTCCTTCATGCGTCAGCTGGCAA
GGTTGGAAAGGGAGTGGAACGGAGGGGGGCGAAACTCTCTGGATGTCGAG
CATTACGCCGACGACCGGTTTGCATGTATACGAAAGTTGGCGGTAAAAGA
TGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGAGAAAATG
AGAGAGGGAAGGAGGGGGAAGGGTTGGGTTTGGAGGTAGAGTGTGAGAAG
GAGGAGGAAGTGGAGGATGTGGGGTGTCCACTTTCGTCGGGGGATAAGTG
CTCGAGGGGAAATGTAAATGAAGGAGAGGTGGAGGTGGAGAGATGGAGGA
TAGAGGATGGGAGGGGAAGGAAAAGAGCTGAATGA
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protein sequence of NO19G00970.1

>NO19G00970.1-protein ID=NO19G00970.1-protein|Name=NO19G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MLFAGLSGRINTSSHNRAESLDHDDPSTTQDPCTILSPCALSSSSTKGLA
SASSSSSLAGSGPSSPPCAIPRHGLDAVNGGLPNVRGSVTPTQHSSRSSR
SSSSSSTTRSARSLTLGVSVDDQEVMLRPTGRQQQQQPHGGREEDEDDDS
GDEDNDCSSTSNNTSPCLPPSGRTPTFAFFKRSNSALATLVGMNNNGSHS
TSTPPSHGIIADNIKKKRGFPNLILTPKGNSSHPSSILPPRALPPLTGSG
SGANNGSSSSKGVSSSTSLMSSLFRLRRRATISVEDDPCPSSLPPSGNCT
SSAAATPSKKSNVNSKNGNRKLVLETGLRACSSIGPPSLSTMDFQYDGSK
ILDYLYVGGEHIPSQDALAETFNITHIVNTTMKDYYPHHPYGQGDYCQLY
LLDSLSEELTNEKLETAFDMVERARAGGHACLVHCRNGMSRSTSVVIAYL
MKYYKMPLLEAFSFVRERRPCTSPNPSFMRQLARLEREWNGGGRNSLDVE
HYADDRFACIRKLAVKDEEEEEEEEEEEDEGENERGKEGEGLGLEVECEK
EEEVEDVGCPLSSGDKCSRGNVNEGEVEVERWRIEDGRGRKRAE*
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mRNA from alignment at chr19:325373..327157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00970.1 ID=NO19G00970.1|Name=NO19G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at chr19:325373..327157+ (Nannochloropsis oceanica)
ATGCTTTTCGCAGGCCTCTCTGGGAGGATCAACACGAGCAGTCACAACCG
CGCCGAAAGCCTGGACCACGATGACCCAAGTACCACGCAAGACCCTTGCA
CCATTCTCAGCCCGTGCGCTCTGTCCTCCTCCTCCACCAAGGGTCTTGCC
TCGGCCTCTTCCTCTTCCTCACTAGCAGGCTCGGGCCCATCTTCCCCTCC
CTGCGCTATCCCACGACACGGCCTTGACGCCGTTAACGGTGGCCTTCCCA
ATGTTCGAGGGAGCGTGACCCCGACACAGCACAGTAGTAGGAGCAGTCGC
AGCAGTAGCAGCAGCAGCACGACCAGAAGCGCAAGAAGTCTGACGCTGGG
CGTCTCCGTGGATGACCAAGAAGTGATGCTTAGACCAACAGGCAGACAGC
AGCAGCAGCAACCGCACGGAGGACGAGAAGAAGACGAGGACGACGACAGC
GGAGATGAGGATAACGACTGCAGTAGCACCAGCAACAATACCAGCCCTTG
CCTTCCACCATCAGGACGCACCCCCACCTTCGCCTTCTTCAAGCGCTCCA
ACTCGGCCTTGGCCACCCTAGTAGGGATGAACAATAATGGGTCGCATTCC
ACCTCTACGCCCCCATCTCACGGCATCATAGCTGACAATATAAAAAAAAA
GCGCGGCTTTCCAAACCTTATTCTGACTCCCAAGGGTAACTCCTCCCACC
CCTCCTCTATACTGCCCCCCCGCGCCTTGCCCCCCCTCACTGGCAGCGGC
AGCGGCGCCAATAACGGCAGCAGCAGCAGCAAAGGAGTCTCGTCATCTAC
CTCCCTAATGAGTTCACTTTTTCGTCTCCGCCGCCGGGCCACGATTTCTG
TCGAAGATGATCCTTGCCCATCGTCCCTTCCCCCCTCGGGCAACTGCACC
AGCAGTGCTGCCGCAACCCCAAGCAAGAAGAGCAACGTCAACAGCAAGAA
CGGAAACAGGAAATTAGTATTGGAGACAGGTCTGCGGGCATGTAGTTCCA
TTGGCCCCCCATCCCTAAGCACGATGGACTTCCAATATGATGGGAGCAAG
ATACTCGATTACCTGTATGTGGGTGGGGAGCACATTCCGAGCCAGGATGC
CCTTGCGGAGACCTTCAACATAACCCACATCGTCAACACGACCATGAAGG
ATTACTACCCTCACCATCCGTACGGGCAGGGGGACTATTGCCAGCTGTAT
TTGCTGGACTCCTTGTCGGAGGAGCTGACAAACGAGAAGTTGGAGACTGC
CTTCGACATGGTGGAGAGGGCGAGGGCAGGGGGGCATGCCTGCCTGGTAC
ACTGCCGGAACGGAATGAGTCGATCGACGTCGGTAGTCATTGCATATCTA
ATGAAGTACTACAAGATGCCCTTGTTGGAGGCCTTTAGTTTTGTGCGGGA
ACGGAGGCCATGCACGAGTCCGAACCCGTCCTTCATGCGTCAGCTGGCAA
GGTTGGAAAGGGAGTGGAACGGAGGGGGGCGAAACTCTCTGGATGTCGAG
CATTACGCCGACGACCGGTTTGCATGTATACGAAAGTTGGCGGTAAAAGA
TGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGAGAAAATG
AGAGAGGGAAGGAGGGGGAAGGGTTGGGTTTGGAGGTAGAGTGTGAGAAG
GAGGAGGAAGTGGAGGATGTGGGGTGTCCACTTTCGTCGGGGGATAAGTG
CTCGAGGGGAAATGTAAATGAAGGAGAGGTGGAGGTGGAGAGATGGAGGA
TAGAGGATGGGAGGGGAAGGAAAAGAGCTGAATGA
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Coding sequence (CDS) from alignment at chr19:325373..327157+

>NO19G00970.1 ID=NO19G00970.1|Name=NO19G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at chr19:325373..327157+ (Nannochloropsis oceanica)
ATGCTTTTCGCAGGCCTCTCTGGGAGGATCAACACGAGCAGTCACAACCG
CGCCGAAAGCCTGGACCACGATGACCCAAGTACCACGCAAGACCCTTGCA
CCATTCTCAGCCCGTGCGCTCTGTCCTCCTCCTCCACCAAGGGTCTTGCC
TCGGCCTCTTCCTCTTCCTCACTAGCAGGCTCGGGCCCATCTTCCCCTCC
CTGCGCTATCCCACGACACGGCCTTGACGCCGTTAACGGTGGCCTTCCCA
ATGTTCGAGGGAGCGTGACCCCGACACAGCACAGTAGTAGGAGCAGTCGC
AGCAGTAGCAGCAGCAGCACGACCAGAAGCGCAAGAAGTCTGACGCTGGG
CGTCTCCGTGGATGACCAAGAAGTGATGCTTAGACCAACAGGCAGACAGC
AGCAGCAGCAACCGCACGGAGGACGAGAAGAAGACGAGGACGACGACAGC
GGAGATGAGGATAACGACTGCAGTAGCACCAGCAACAATACCAGCCCTTG
CCTTCCACCATCAGGACGCACCCCCACCTTCGCCTTCTTCAAGCGCTCCA
ACTCGGCCTTGGCCACCCTAGTAGGGATGAACAATAATGGGTCGCATTCC
ACCTCTACGCCCCCATCTCACGGCATCATAGCTGACAATATAAAAAAAAA
GCGCGGCTTTCCAAACCTTATTCTGACTCCCAAGGGTAACTCCTCCCACC
CCTCCTCTATACTGCCCCCCCGCGCCTTGCCCCCCCTCACTGGCAGCGGC
AGCGGCGCCAATAACGGCAGCAGCAGCAGCAAAGGAGTCTCGTCATCTAC
CTCCCTAATGAGTTCACTTTTTCGTCTCCGCCGCCGGGCCACGATTTCTG
TCGAAGATGATCCTTGCCCATCGTCCCTTCCCCCCTCGGGCAACTGCACC
AGCAGTGCTGCCGCAACCCCAAGCAAGAAGAGCAACGTCAACAGCAAGAA
CGGAAACAGGAAATTAGTATTGGAGACAGGTCTGCGGGCATGTAGTTCCA
TTGGCCCCCCATCCCTAAGCACGATGGACTTCCAATATGATGGGAGCAAG
ATACTCGATTACCTGTATGTGGGTGGGGAGCACATTCCGAGCCAGGATGC
CCTTGCGGAGACCTTCAACATAACCCACATCGTCAACACGACCATGAAGG
ATTACTACCCTCACCATCCGTACGGGCAGGGGGACTATTGCCAGCTGTAT
TTGCTGGACTCCTTGTCGGAGGAGCTGACAAACGAGAAGTTGGAGACTGC
CTTCGACATGGTGGAGAGGGCGAGGGCAGGGGGGCATGCCTGCCTGGTAC
ACTGCCGGAACGGAATGAGTCGATCGACGTCGGTAGTCATTGCATATCTA
ATGAAGTACTACAAGATGCCCTTGTTGGAGGCCTTTAGTTTTGTGCGGGA
ACGGAGGCCATGCACGAGTCCGAACCCGTCCTTCATGCGTCAGCTGGCAA
GGTTGGAAAGGGAGTGGAACGGAGGGGGGCGAAACTCTCTGGATGTCGAG
CATTACGCCGACGACCGGTTTGCATGTATACGAAAGTTGGCGGTAAAAGA
TGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGAGAAAATG
AGAGAGGGAAGGAGGGGGAAGGGTTGGGTTTGGAGGTAGAGTGTGAGAAG
GAGGAGGAAGTGGAGGATGTGGGGTGTCCACTTTCGTCGGGGGATAAGTG
CTCGAGGGGAAATGTAAATGAAGGAGAGGTGGAGGTGGAGAGATGGAGGA
TAGAGGATGGGAGGGGAAGGAAAAGAGCTGAATGA
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Synonyms
Publications