NO19G00920.1, NO19G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00920.1
Unique NameNO19G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1798
Alignment locationchr19:311105..312902 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:311105..312902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00920.1 vs.
Match: EWM23600.1 (l-gulonolactone oxidase [Nannochloropsis gaditana])

HSP 1 Score: 830.5 bits (2144), Expect = 2.600e-237
Identity = 395/470 (84.04%), Postives = 431/470 (91.70%), Query Frame = 0 
Query:    1 MACIPCRGPRPDVDAAHPKVSSNRPLKNWGHSYQFTPAVVVEATTFDDVIEAVKDTVKYPTPVRALGNIHTVTEAVVNEGGTVVLMRGLRAIISVGNDEEGQTVTAQAGTSLLELHTWLGKKGLEMLVAPEIGDATIGSVVGSVTKDAGPGPSSETGSLYKAIVGVKYVDHTGQVVVLTKKTNEAALGLFKCSEGLLGIVLEVTFRVFPQRLVRLGLTIMDTKEMVKKISTQILSKGRTAFILVQPELSFIETREPAKEGAKASSEFWWQTIAAFKLPNFQHGRVFFPFPLLKMTPYRANVYRRTQVNHYGEPGPKDTRLDFSWYEYPFERFEEVITEFNAFTLDFAGRNGGWRPGACATYFMERMTDKPNGWFSCNGKGFDKPGVSFTLDPIYKNPNDPNWRQFVRECNAFAIAHGGRVALTQTREMDRDTYLACPGQVPLKEAPNKRFTTPFYARYVEKEGENVEIPL 471
            MACIPCRGP PD +A + KV+SNRPLKNWG SYQFTPAVVVEA TF+DVIEAV+DT KYPTPVRALGNIHTVTEAVVNEGGTVVLMR L  II+VGND+EGQTVTAQAGT+LLELH WLGKKGLEMLVAPEIGDA++GS+VGSVTKDAGPGP SETGSLYKAIVGVKYVDH G+VV L+KK + A LGLFKCSEGLLGIVLEVTFRVFP+ LV+L L IM+TK+MVKKIST ILSK RTAFILVQPELSFIETREPA EGA+ASSEFWW  IAAFKLPNFQHG V FPFPLLK  PYRA +YRRTQVNHYGEPGP+D RLDFSWYEYPFERFEEV+T FNAFTLDFA R+ GWRPGACATYFMERMT+KP+GWFSC GKG++K G+SFTLDPI+ NPNDPNWR FV+ECN FA+AHGGRVALTQTREMDRDTYLACPGQVPLKEAPNKRFTTPF+AR+VE+EGE++EIPL
Sbjct:   36 MACIPCRGPGPDPEAEYSKVTSNRPLKNWGRSYQFTPAVVVEAATFEDVIEAVQDTEKYPTPVRALGNIHTVTEAVVNEGGTVVLMRKLNQIIAVGNDDEGQTVTAQAGTTLLELHNWLGKKGLEMLVAPEIGDASVGSIVGSVTKDAGPGPPSETGSLYKAIVGVKYVDHMGRVVRLSKKEHAAELGLFKCSEGLLGIVLEVTFRVFPESLVQLSLKIMNTKDMVKKISTDILSKTRTAFILVQPELSFIETREPAPEGAEASSEFWWSLIAAFKLPNFQHGLVLFPFPLLKFLPYRACLYRRTQVNHYGEPGPRDNRLDFSWYEYPFERFEEVVTAFNAFTLDFAERHNGWRPGACATYFMERMTNKPHGWFSCKGKGYEKAGMSFTLDPIFNNPNDPNWRAFVKECNVFAVAHGGRVALTQTREMDRDTYLACPGQVPLKEAPNKRFTTPFFARFVEREGEDIEIPL 505
The following BLAST results are available for this feature:
BLAST of NO19G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23600.12.600e-23784.04l-gulonolactone oxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00920NO19G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00920.1NO19G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00920.1.cds1NO19G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00920.1 ID=NO19G00920.1|Name=NO19G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp
ACAGCTCGCAGAAGCCAACCAATTAAACCAAGCCAGGCAAGCACCACCCT
CGAAAGTATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATGTAGATG
CGGCACATCCCAAGGTCTCGAGCAACCGCCCTCTGAAAAATTGGGGCCAC
TCTTACCAATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTTTGACGA
CGTCATCGAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTGTGCGTG
CTTTGGGCAACATCCACACCGTGACGGAGGCAGTCGTGAACGAGGGTGGG
ACCGTGGTGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGGCAACGA
CGAGGAAGGGCAGACGGTCACAGCGCAGGCTGGGACGTCCTTGCTGGAGC
TGCACACGTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCCCCAGAG
ATCGGCGATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAAGGATGC
AGGGCCGGGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCATTGTCG
GGGTTAAATACGTGGATCATACAGGACAAGTGGTAGTCTTGACCAAAAAG
ACAAATGAGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCTGCTAGG
CATTGTGTTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGGTAAGGC
TTGGATTGACCATCATGGACACGAAGGAGATGGTGAAAAAAATCTCGACG
CAGATTCTGTCAAAGGGACGGACGGCTTTCATCTTGGTGCAGCCGGAATT
GAGTTTCATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAGCGAGTA
GTGAGTTTTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAATTTTCAG
CATGGCCGCGTGTTCTTCCCCTTTCCTCTATTGAAGATGACACCGTACCG
TGCCAACGTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGCCGGGGC
CCAAGGACACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTCGAGCGA
TTCGAGGAGGTGATCACGGAATTCAACGCATTCACCTTAGACTTTGCGGG
GCGAAATGGTGGGTGGCGACCGGGGGCGTGTGCCACGTACTTCATGGAGC
GGATGACAGATAAGCCCAACGGGTGGTTTAGTTGTAACGGTAAAGGGTTT
GACAAGCCGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAACCCAAA
TGACCCGAATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTGCCATCG
CGCATGGAGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGACCGGGAT
ACTTATCTGGCATGCCCTGGACAGGTTCCGCTGAAGGAGGCTCCGAATAA
ACGGTTCACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGGGGGAGA
ACGTTGAGATCCCCCTTTAGAGGGCAAGAGGAGGGAGGGAGAGTGAGGAA
AGCAGGTAAGAAGGAAGCCTTGCTGCTTTAGAGTAAGGGCGAATCAAGTC
GGAGATGGAAAAAATTGAAAAGGTAAAGTGGCTGTAAACTTTGTGACTGC
GCTTTCGGGAAAGGAAAAAAGCAGGGAGGAAGACGGGGAGGATGAGCTTG
ACGGGCGCAAAGAAATGCCTCACACAGAATTTGGTTAAAAACATAAAAAA
GAAAATATAGCGGAAGGGCATACAAGGAAGGGAATGGGCAGTGGAATGTA
AAAAGGAAAAATAAGCCAAGTTTCAGCAAAGATACAAGATATAGATAG
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protein sequence of NO19G00920.1

>NO19G00920.1-protein ID=NO19G00920.1-protein|Name=NO19G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MACIPCRGPRPDVDAAHPKVSSNRPLKNWGHSYQFTPAVVVEATTFDDVI
EAVKDTVKYPTPVRALGNIHTVTEAVVNEGGTVVLMRGLRAIISVGNDEE
GQTVTAQAGTSLLELHTWLGKKGLEMLVAPEIGDATIGSVVGSVTKDAGP
GPSSETGSLYKAIVGVKYVDHTGQVVVLTKKTNEAALGLFKCSEGLLGIV
LEVTFRVFPQRLVRLGLTIMDTKEMVKKISTQILSKGRTAFILVQPELSF
IETREPAKEGAKASSEFWWQTIAAFKLPNFQHGRVFFPFPLLKMTPYRAN
VYRRTQVNHYGEPGPKDTRLDFSWYEYPFERFEEVITEFNAFTLDFAGRN
GGWRPGACATYFMERMTDKPNGWFSCNGKGFDKPGVSFTLDPIYKNPNDP
NWRQFVRECNAFAIAHGGRVALTQTREMDRDTYLACPGQVPLKEAPNKRF
TTPFYARYVEKEGENVEIPL*
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mRNA from alignment at chr19:311105..312902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00920.1 ID=NO19G00920.1|Name=NO19G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at chr19:311105..312902- (Nannochloropsis oceanica)
ACAGCTCGCAGAAGCCAACCAATTAAACCAAGCCAGGCAAGCACCACCCT
CGAAAGTATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATGTAGATG
CGGCACATCCCAAGGTCTCGAGCAACCGCCCTCTGAAAAATTGGGGCCAC
TCTTACCAATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTTTGACGA
CGTCATCGAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTGTGCGTG
CTTTGGGCAACATCCACACCGTGACGGAGGCAGTCGTGAACGAGGGTGGG
ACCGTGGTGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGGCAACGA
CGAGGAAGGGCAGACGGTCACAGCGCAGGCTGGGACGTCCTTGCTGGAGC
TGCACACGTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCCCCAGAG
ATCGGCGATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAAGGATGC
AGGGCCGGGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCATTGTCG
GGGTTAAATACGTGGATCATACAGGACAAGTGGTAGTCTTGACCAAAAAG
ACAAATGAGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCTGCTAGG
CATTGTGTTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGGTAAGGC
TTGGATTGACCATCATGGACACGAAGGAGATGGTGAAAAAAATCTCGACG
CAGATTCTGTCAAAGGGACGGACGGCTTTCATCTTGGTGCAGCCGGAATT
GAGTTTCATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAGCGAGTA
GTGAGTTTTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAATTTTCAG
CATGGCCGCGTGTTCTTCCCCTTTCCTCTATTGAAGATGACACCGTACCG
TGCCAACGTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGCCGGGGC
CCAAGGACACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTCGAGCGA
TTCGAGGAGGTGATCACGGAATTCAACGCATTCACCTTAGACTTTGCGGG
GCGAAATGGTGGGTGGCGACCGGGGGCGTGTGCCACGTACTTCATGGAGC
GGATGACAGATAAGCCCAACGGGTGGTTTAGTTGTAACGGTAAAGGGTTT
GACAAGCCGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAACCCAAA
TGACCCGAATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTGCCATCG
CGCATGGAGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGACCGGGAT
ACTTATCTGGCATGCCCTGGACAGGTTCCGCTGAAGGAGGCTCCGAATAA
ACGGTTCACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGGGGGAGA
ACGTTGAGATCCCCCTTTAGAGGGCAAGAGGAGGGAGGGAGAGTGAGGAA
AGCAGGTAAGAAGGAAGCCTTGCTGCTTTAGAGTAAGGGCGAATCAAGTC
GGAGATGGAAAAAATTGAAAAGGTAAAGTGGCTGTAAACTTTGTGACTGC
GCTTTCGGGAAAGGAAAAAAGCAGGGAGGAAGACGGGGAGGATGAGCTTG
ACGGGCGCAAAGAAATGCCTCACACAGAATTTGGTTAAAAACATAAAAAA
GAAAATATAGCGGAAGGGCATACAAGGAAGGGAATGGGCAGTGGAATGTA
AAAAGGAAAAATAAGCCAAGTTTCAGCAAAGATACAAGATATAGATAG
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Coding sequence (CDS) from alignment at chr19:311105..312902-

>NO19G00920.1 ID=NO19G00920.1|Name=NO19G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr19:311105..312902- (Nannochloropsis oceanica)
ATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATGTAGATGCGGCACA
TCCCAAGGTCTCGAGCAACCGCCCTCTGAAAAATTGGGGCCACTCTTACC
AATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTTTGACGACGTCATC
GAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTGTGCGTGCTTTGGG
CAACATCCACACCGTGACGGAGGCAGTCGTGAACGAGGGTGGGACCGTGG
TGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGGCAACGACGAGGAA
GGGCAGACGGTCACAGCGCAGGCTGGGACGTCCTTGCTGGAGCTGCACAC
GTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCCCCAGAGATCGGCG
ATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAAGGATGCAGGGCCG
GGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCATTGTCGGGGTTAA
ATACGTGGATCATACAGGACAAGTGGTAGTCTTGACCAAAAAGACAAATG
AGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCTGCTAGGCATTGTG
TTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGGTAAGGCTTGGATT
GACCATCATGGACACGAAGGAGATGGTGAAAAAAATCTCGACGCAGATTC
TGTCAAAGGGACGGACGGCTTTCATCTTGGTGCAGCCGGAATTGAGTTTC
ATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAGCGAGTAGTGAGTT
TTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAATTTTCAGCATGGCC
GCGTGTTCTTCCCCTTTCCTCTATTGAAGATGACACCGTACCGTGCCAAC
GTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGCCGGGGCCCAAGGA
CACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTCGAGCGATTCGAGG
AGGTGATCACGGAATTCAACGCATTCACCTTAGACTTTGCGGGGCGAAAT
GGTGGGTGGCGACCGGGGGCGTGTGCCACGTACTTCATGGAGCGGATGAC
AGATAAGCCCAACGGGTGGTTTAGTTGTAACGGTAAAGGGTTTGACAAGC
CGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAACCCAAATGACCCG
AATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTGCCATCGCGCATGG
AGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGACCGGGATACTTATC
TGGCATGCCCTGGACAGGTTCCGCTGAAGGAGGCTCCGAATAAACGGTTC
ACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGGGGGAGAACGTTGA
GATCCCCCTTTAG
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Synonyms
Publications