NO19G00900.1, NO19G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00900.1
Unique NameNO19G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr19:305346..307519 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:305346..307519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00900.1 vs.
Match: EWM23593.1 (nuclear y ccaat-box binding factor c subunit nf yc [Nannochloropsis gaditana])

HSP 1 Score: 213.4 bits (542), Expect = 1.600e-51
Identity = 188/427 (44.03%), Postives = 255/427 (59.72%), Query Frame = 0 
Query:   81 DEMEDFKAKVRKSDEEEEENKQVEEDE--GDMGENQHLSEFDGEAAAAAAAAAEEEEEEEEEEEEEEEEANETDGRIMATATSPSEAEEEGEEGREEEEENDENEDSQAVSDRFLLSQTLKQAKSAWMLYTSEARAALKKAQPSLKVTEQLKIMSEQWKSLSRNARQPFLDRAAADKERYRHDKQQYAEAELREKTRRAKMHKKEGGSEGGRDRR--RELSEEMLFPLARIRRVMKLDPEVKTISKEAAMLVAKATELFLDLLGEEAHKASGKKKTLKADDVTAAMRRYGPFCFLRPDFPMGGRGGGGGGKEREVKKGSEAGG--GGEGNMNAIAKLAAADRRKMKERAWE---GEEGKGEGEEEGGKGLEEGKEAGAAGKQRGRKSKGKGTAAHVAVAEGKANISSFFGEKKAM-EASALSGSENN 498
            D   D K  + ++ ++  ++ +VE +E  G+ G++  + +    + A     A E        +  + +A E D           E E++ EE  EEE E +  ED    +DR L +     AKSAWML+T+EAR  LK+ QPSL+VTEQ+KIMSEQWK+L   AR+PFL+RAAADKERY+ +K ++      E  + AK   K GG E  RD    R L++EMLFPLARIR++MKLDPEVKT+SKEAA+LV KATELFLD++GEE+HKASG+++TLK++DV AAMRR G F FLRPDFPMGG+   G      + K  E G   G  G MNAIAKLAAAD+R+ +ER  E     EGK + E E             + ++RGRK+  K T    A   G+  I++F G K  + + S+ +  E N
Sbjct:   51 DTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKD--------IEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRW------EGNQVAKAVPK-GGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAE-------------SSQKRGRKA--KNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN 447
The following BLAST results are available for this feature:
BLAST of NO19G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23593.11.600e-5144.03nuclear y ccaat-box binding factor c subunit nf yc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00900NO19G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00900.1NO19G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00900.1.cds1NO19G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00900.1.cds2NO19G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00900.1.cds3NO19G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00900.1.cds4NO19G00900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00900.1 ID=NO19G00900.1|Name=NO19G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
AGGTGGACGATGCTCACTGGCGGAGAACTTGAGACCATGCCAATCGTTGA
AGGAGAGGACAAGGAGGAAGCCGAGGCGAATGAAGAAGAGAACAGTAAGC
AGGAACAGCAACCAGAGCGTCAGGAGGACGAGGGCGACAATGGTGTTGAC
GCGGAGAGCGAGAGAGCACACTTAGCCAGTGCGACTGCCCTAAATACTGC
TGATCGTAGAGATGGAGACGAGGGTGAGGCCACACTAGGCAGTGATGTCG
ATGAGATGGAAGATTTTAAGGCCAAGGTGAGGAAGTCCGACGAAGAGGAG
GAAGAGAACAAGCAGGTGGAAGAGGACGAGGGAGATATGGGAGAAAATCA
GCACCTATCGGAGTTTGATGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GCAAACGAAACAGATGGGAGGATCATGGCCACTGCCACTTCTCCGAGCGA
GGCAGAGGAGGAGGGCGAGGAAGGGAGGGAAGAGGAGGAGGAGAATGACG
AGAACGAGGACTCCCAGGCGGTGTCGGATAGGTTCTTACTGAGCCAAACG
TTGAAGCAGGCAAAGTCGGCATGGATGCTGTACACGAGTGAGGCGCGCGC
AGCGTTGAAGAAGGCCCAACCCTCTCTTAAAGTCACGGAGCAACTCAAGA
TAATGTCCGAGCAATGGAAATCCCTCTCTCGCAACGCCCGACAGCCTTTC
CTGGACCGTGCGGCCGCAGACAAGGAACGTTATCGGCACGACAAACAGCA
ATATGCCGAAGCCGAGCTTCGCGAGAAAACACGTCGGGCCAAGATGCACA
AGAAGGAGGGAGGGAGCGAGGGAGGGAGGGATCGAAGGAGGGAGCTGAGC
GAGGAGATGTTGTTCCCCTTGGCAAGGATTAGACGAGTCATGAAACTCGA
TCCGGAAGTAAAGACTATCTCGAAGGAGGCGGCGATGCTAGTGGCCAAAG
CGACGGAACTCTTCCTTGATCTGCTTGGAGAAGAAGCGCATAAGGCTTCA
GGAAAGAAGAAAACCCTTAAGGCTGATGACGTTACTGCAGCGATGCGTCG
TTATGGCCCATTTTGTTTTCTACGACCCGATTTTCCCATGGGAGGTAGAG
GAGGAGGAGGGGGAGGGAAGGAAAGAGAGGTGAAGAAAGGGAGTGAGGCA
GGAGGGGGAGGGGAAGGGAATATGAATGCGATAGCCAAGCTGGCAGCGGC
GGACCGGAGGAAGATGAAGGAAAGGGCATGGGAAGGAGAAGAGGGAAAGG
GAGAGGGGGAGGAGGAGGGCGGGAAGGGATTGGAGGAGGGGAAAGAGGCG
GGAGCGGCAGGCAAGCAGAGAGGGCGTAAGTCTAAGGGGAAGGGTACAGC
GGCGCATGTGGCCGTGGCCGAAGGAAAGGCGAATATCTCGAGCTTTTTTG
GGGAAAAAAAGGCGATGGAAGCGTCAGCCTTAAGTGGCAGTGAGAATAAT
TAGACATTCATGGGCGGGTAGGGGAGGTCGAGCAAAAGGGTGAAAAAGCA
AAAACCAAAAGGAGCGACACTCTTTATTGACTGGTTGGTACGATTTGCCT
TCACAAAAAAGAAATACACATGTGTAAAGTATATACATTTATACATATAA
GCAAACGATCATCG
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protein sequence of NO19G00900.1

>NO19G00900.1-protein ID=NO19G00900.1-protein|Name=NO19G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLTGGELETMPIVEGEDKEEAEANEEENSKQEQQPERQEDEGDNGVDAES
ERAHLASATALNTADRRDGDEGEATLGSDVDEMEDFKAKVRKSDEEEEEN
KQVEEDEGDMGENQHLSEFDGEAAAAAAAAAEEEEEEEEEEEEEEEEANE
TDGRIMATATSPSEAEEEGEEGREEEEENDENEDSQAVSDRFLLSQTLKQ
AKSAWMLYTSEARAALKKAQPSLKVTEQLKIMSEQWKSLSRNARQPFLDR
AAADKERYRHDKQQYAEAELREKTRRAKMHKKEGGSEGGRDRRRELSEEM
LFPLARIRRVMKLDPEVKTISKEAAMLVAKATELFLDLLGEEAHKASGKK
KTLKADDVTAAMRRYGPFCFLRPDFPMGGRGGGGGGKEREVKKGSEAGGG
GEGNMNAIAKLAAADRRKMKERAWEGEEGKGEGEEEGGKGLEEGKEAGAA
GKQRGRKSKGKGTAAHVAVAEGKANISSFFGEKKAMEASALSGSENN*
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mRNA from alignment at chr19:305346..307519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00900.1 ID=NO19G00900.1|Name=NO19G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at chr19:305346..307519+ (Nannochloropsis oceanica)
AGGTGGACGATGCTCACTGGCGGAGAACTTGAGACCATGCCAATCGTTGA
AGGAGAGGACAAGGAGGAAGCCGAGGCGAATGAAGAAGAGAACAGTAAGC
AGGAACAGCAACCAGAGCGTCAGGAGGACGAGGGCGACAATGGTGTTGAC
GCGGAGAGCGAGAGAGGTGAATGAAGAGGCGGGTGGAGGCGAGGGTGGGC
GAGGGTGGGCGAGGCCTGGTGGAGGGTGAGAAGGAAGGGGCACTCACTCA
GCCCTCCGTGCTTTTTTTCTACGCGCATCATCCACTCACGCACATTCCGT
ACAGCACACTTAGCCAGTGCGACTGCCCTAAATACTGCTGATCGTAGAGA
TGGAGACGAGGGTGAGGCCACACTAGGCAGTGATGTCGATGAGATGGAAG
ATTTTAAGGCCAAGGTGAGGAAGTCCGACGAAGAGGAGGAAGAGAACAAG
CAGGTGGAAGAGGACGAGGGAGATATGGGAGAAAATCAGCACCTATCGGA
GTTTGATGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAACGAAACA
GATGGGAGGATCATGGCCACTGCCACTTCTCCGAGCGAGGCAGAGGAGGA
GGGCGAGGAAGGGAGGGAAGAGGAGGAGGAGAATGACGAGAACGAGGACT
CCCAGGCGGTGTCGGATAGGTTCTTACTGAGCCAAACGTTGAAGCAGGCA
AAGTCGGCATGGATGCTGTACACGAGTGAGGCGCGCGCAGCGTTGAAGAA
GGTGAGTGAGCGAGGGTGGGAGGAAATGAAAGAGGGAGGGAGGTTTGGCC
TTTACCCTTTTCCCTTTTGTATTTATCCGTTCATATTTTTCATTCATCAA
TTTGATAAATTAATCGAATATTCACACAGGCCCAACCCTCTCTTAAAGTC
ACGGAGCAACTCAAGATAATGTCCGAGCAATGGAAATCCCTCTCTCGCAA
CGCCCGACAGCCTTTCCTGGACCGTGCGGCCGCAGACAAGGAACGTTATC
GGCACGACAAACAGCAATATGCCGAAGCCGAGCTTCGCGAGAAAACACGT
CGGGCCAAGATGCACAAGAAGGAGGGAGGGAGCGAGGGAGGGAGGGATCG
AAGGAGGGAGCTGAGCGAGGAGATGTTGTTCCCCTTGGCAAGGATTAGAC
GAGTCATGAAACTCGATCCGGAAGTAAAGACTATCTCGAAGGAGGCGGCG
ATGCTAGTGGCCAAAGCGACGGTAACCAACTCCTCCCTCCTTCCAACCCT
CCTTCCGCCTTCTTTCTTTGAACTCAGCCTCCTTCCCTTCCTCGCCCCCT
CCCTCCCTCCACAAGCTTTTCGAGCTAATGGGATTTAGGGAGGAGTCAAA
TCCACAATCCAGACGGATATTAATGATTTAGCAGAAGTATAAGTATTTTG
CTATCTGCTCATTCTTGTTCCCTTTCTCCCTCCCCCTTCTTTTTTAAAAA
TCATATGTATAACAGGAACTCTTCCTTGATCTGCTTGGAGAAGAAGCGCA
TAAGGCTTCAGGAAAGAAGAAAACCCTTAAGGCTGATGACGTTACTGCAG
CGATGCGTCGTTATGGCCCATTTTGTTTTCTACGACCCGATTTTCCCATG
GGAGGTAGAGGAGGAGGAGGGGGAGGGAAGGAAAGAGAGGTGAAGAAAGG
GAGTGAGGCAGGAGGGGGAGGGGAAGGGAATATGAATGCGATAGCCAAGC
TGGCAGCGGCGGACCGGAGGAAGATGAAGGAAAGGGCATGGGAAGGAGAA
GAGGGAAAGGGAGAGGGGGAGGAGGAGGGCGGGAAGGGATTGGAGGAGGG
GAAAGAGGCGGGAGCGGCAGGCAAGCAGAGAGGGCGTAAGTCTAAGGGGA
AGGGTACAGCGGCGCATGTGGCCGTGGCCGAAGGAAAGGCGAATATCTCG
AGCTTTTTTGGGGAAAAAAAGGCGATGGAAGCGTCAGCCTTAAGTGGCAG
TGAGAATAATTAGACATTCATGGGCGGGTAGGGGAGGTCGAGCAAAAGGG
TGAAAAAGCAAAAACCAAAAGGAGCGACACTCTTTATTGACTGGTTGGTA
CGATTTGCCTTCACAAAAAAGAAATACACATGTGTAAAGTATATACATTT
ATACATATAAGCAAACGATCATCG
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Coding sequence (CDS) from alignment at chr19:305346..307519+

>NO19G00900.1 ID=NO19G00900.1|Name=NO19G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr19:305346..307519+ (Nannochloropsis oceanica)
ATGCTCACTGGCGGAGAACTTGAGACCATGCCAATCGTTGAAGGAGAGGA
CAAGGAGGAAGCCGAGGCGAATGAAGAAGAGAACAGTAAGCAGGAACAGC
AACCAGAGCGTCAGGAGGACGAGGGCGACAATGGTGTTGACGCGGAGAGC
GAGAGAGCACACTTAGCCAGTGCGACTGCCCTAAATACTGCTGATCGTAG
AGATGGAGACGAGGGTGAGGCCACACTAGGCAGTGATGTCGATGAGATGG
AAGATTTTAAGGCCAAGGTGAGGAAGTCCGACGAAGAGGAGGAAGAGAAC
AAGCAGGTGGAAGAGGACGAGGGAGATATGGGAGAAAATCAGCACCTATC
GGAGTTTGATGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAACGAA
ACAGATGGGAGGATCATGGCCACTGCCACTTCTCCGAGCGAGGCAGAGGA
GGAGGGCGAGGAAGGGAGGGAAGAGGAGGAGGAGAATGACGAGAACGAGG
ACTCCCAGGCGGTGTCGGATAGGTTCTTACTGAGCCAAACGTTGAAGCAG
GCAAAGTCGGCATGGATGCTGTACACGAGTGAGGCGCGCGCAGCGTTGAA
GAAGGCCCAACCCTCTCTTAAAGTCACGGAGCAACTCAAGATAATGTCCG
AGCAATGGAAATCCCTCTCTCGCAACGCCCGACAGCCTTTCCTGGACCGT
GCGGCCGCAGACAAGGAACGTTATCGGCACGACAAACAGCAATATGCCGA
AGCCGAGCTTCGCGAGAAAACACGTCGGGCCAAGATGCACAAGAAGGAGG
GAGGGAGCGAGGGAGGGAGGGATCGAAGGAGGGAGCTGAGCGAGGAGATG
TTGTTCCCCTTGGCAAGGATTAGACGAGTCATGAAACTCGATCCGGAAGT
AAAGACTATCTCGAAGGAGGCGGCGATGCTAGTGGCCAAAGCGACGGAAC
TCTTCCTTGATCTGCTTGGAGAAGAAGCGCATAAGGCTTCAGGAAAGAAG
AAAACCCTTAAGGCTGATGACGTTACTGCAGCGATGCGTCGTTATGGCCC
ATTTTGTTTTCTACGACCCGATTTTCCCATGGGAGGTAGAGGAGGAGGAG
GGGGAGGGAAGGAAAGAGAGGTGAAGAAAGGGAGTGAGGCAGGAGGGGGA
GGGGAAGGGAATATGAATGCGATAGCCAAGCTGGCAGCGGCGGACCGGAG
GAAGATGAAGGAAAGGGCATGGGAAGGAGAAGAGGGAAAGGGAGAGGGGG
AGGAGGAGGGCGGGAAGGGATTGGAGGAGGGGAAAGAGGCGGGAGCGGCA
GGCAAGCAGAGAGGGCGTAAGTCTAAGGGGAAGGGTACAGCGGCGCATGT
GGCCGTGGCCGAAGGAAAGGCGAATATCTCGAGCTTTTTTGGGGAAAAAA
AGGCGATGGAAGCGTCAGCCTTAAGTGGCAGTGAGAATAATTAG
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Synonyms
Publications