NO19G00800.1, NO19G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00800.1
Unique NameNO19G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2080
Alignment locationchr19:275265..278915 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:275265..278915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00800.1 vs.
Match: EWM23582.1 (hypothetical protein Naga_100266g6 [Nannochloropsis gaditana])

HSP 1 Score: 427.2 bits (1097), Expect = 4.300e-116
Identity = 224/286 (78.32%), Postives = 250/286 (87.41%), Query Frame = 0 
Query:    5 SGSPASAAFDRRATVTAASTTATAHYESTHPHHRIANVALGQTAAAVIASSFVSPAMTIIDMSIIRAQFSKSSISSALRGTTADLLSGRMRWSPALGIMSTVYTSTYLTANYTTALCHELDIDYKIPTAVATSLVNITAIAYKDREFARMCSKAPTTFPLSSYGLFAMRDGLTVTSSFVLKNTVKDHLIDEHNLEAHNADLAASFAVPMLAQLFSTPLHILSLDIYSHPQSPFRMRMKEVMKGYSSVCSGRVMRIIPAFGIGGYLNDIVKEGFEEEQVGRRDGKAV 291
            S + ++A+  +  TV A STTA+ HYE THP +R+A VALGQTAAAVIASS VSPAMT+ID+SIIRAQF+KSS+ SALR TT+DLLSGRMRW+PAL IMSTVYTSTYLTANYT+ALC EL IDYKIPTAVATSLVNITAIAYKDREFARMCSKAPT FPLS YGLFA+RDGLTVTSSFVLKNT+K+ L  EH L  +NADLAASFAVPM+AQL STPLHILSLDIYSHP+SPFRMRMKE+ KGY SVCSGRV+RIIPAFG+GGYLND VKE FEE +   R+GK V
Sbjct:   12 SATSSNASASKYTTVQATSTTASTHYEYTHPQNRMAQVALGQTAAAVIASSVVSPAMTVIDLSIIRAQFNKSSMGSALRSTTSDLLSGRMRWNPALSIMSTVYTSTYLTANYTSALCQELGIDYKIPTAVATSLVNITAIAYKDREFARMCSKAPTVFPLSCYGLFALRDGLTVTSSFVLKNTIKERLEAEHGLSHNNADLAASFAVPMIAQLASTPLHILSLDIYSHPESPFRMRMKEIAKGYMSVCSGRVLRIIPAFGVGGYLNDQVKESFEERE-NNREGKGV 296
The following BLAST results are available for this feature:
BLAST of NO19G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23582.14.300e-11678.32hypothetical protein Naga_100266g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00800NO19G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00800.1NO19G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00800.1.cds1NO19G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds2NO19G00800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds3NO19G00800.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds4NO19G00800.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds5NO19G00800.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds6NO19G00800.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00800.1.cds7NO19G00800.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00800.1 ID=NO19G00800.1|Name=NO19G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp
GGTGCTCGGTATTATTATGAATTTGGATTGGATGTGGAGGGAAATGGTTT
TGCAAGACGGCAGGCCCGTGCTTCCCCAAAAGCACAGCTGAAGGCTTGCT
TCCCTCTCGCTGCTTCGGCAACCGAATGTGGCTCATCCACGCGAGTGCTG
TGCCTTCCCCTTCAATAAAATACATGGCTTTCCCCCGTCTCATACATTTT
CTTACCCTTCTCTACGACAGCACACACACCCGGCACTCAAACCAAACCGT
CCACAAGCGACACCCTGCCCTAGCATGGCCCAGACGTCCGGGTCACCTGC
TTCTGCTGCCTTCGACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCG
CGACAGCCCACTATGAATCCACCCATCCCCACCACCGCATTGCGAATGTG
GCCTTGGGGCAGACGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCC
CGCCATGACCATTATCGACATGTCCATCATTCGCGCGCAGTTCAGCAAGT
CCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGACCTGCTGAGCGGC
CGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCACTGTGTACACCAG
CACCTACCTGACCGCAAATTACACCACGGCCCTGTGCCACGAGCTGGACA
TTGACTACAAGATACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACT
GCCATCGCTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGGCCCC
GACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCATGCGCGACGGCT
TAACGGTCACTTCATCGTTTGTGCTCAAGAACACCGTCAAGGACCACCTC
ATCGACGAACACAACCTCGAGGCCCATAATGCCGACCTGGCCGCCTCCTT
CGCCGTGCCAATGCTCGCGCAGCTTTTCTCCACCCCCCTCCATATCCTCT
CCCTGGACATCTACTCGCACCCGCAGTCGCCATTTCGCATGCGAATGAAG
GAGGTAATGAAGGGCTATTCGTCCGTATGCTCGGGGAGGGTGATGAGGAT
CATCCCAGCCTTCGGCATAGGGGGCTACCTAAATGATATTGTCAAGGAGG
GATTTGAGGAGGAGCAGGTCGGGAGAAGGGATGGAAAGGCTGTGCGTGTG
CCAGCCACGGGAGAGAGGAAGAATTGAGCTCTCACGCATGAGGAGAAGAG
AGGCAGGAACGAGGGAGGGAGGGAGGGAATGCCTTGCATCGATTATAGTG
AAAGAAGTAGTTGTAGTAGTTGTAAGAAGTTTAGATCTGGCCCACCGAGA
ATACAGCGAAGGAGGGAGGAAGGGAGAGTGGGAGGGGGGTAGAGGAGTGG
TCGCCTCTATTGTGATGAAGAGAAAGCACACACCAGCCCAGCACGCATAT
ACATAAATGTATATACATAAACATATATATACATTCACGTTCACATGCAC
ACACCCACACACACTTTGTCATGCCGGAGTCGTTTCGGGAAGGAAGAGGA
GGAAGAGAAAGAAACGTGAGGGCTTGCACAAAACGAGAGAATTTGAGAGC
GGGATGATGGACGAACGGCAGATGGAGAGTGTAAAGAGAGAGGGGAAGAT
GATGGTGATGAGTGCCTACAAAAACGCCCACGGGGGTGACTTGACCCCCC
CCAAAAAAAAGGTAGAGAAAACAAAGCAGGTCCAAGGTGACTAACAAGAA
GCGGTAGTGTATGAGAAGGACGAAGAAACCTTGTGATTGGGTGCTCGTTG
AGGAGAGAAGGAGGGGAGGGAGGAGGGAAGGAAGGAAGGAGGGAGGGTGC
AAGCGAAATGATTAAAAATGTAGGTATGGACTGACTGATACACATCGTTA
TTTCTGAGATGATTACATAATACATATATATGTAGGTATATTCAAACAAT
GGCTTGTACGACAAGTGTGATAACGCGACAAATATAGTTTCCAACAGTGA
TGACAGTCGAAAAGAGATTGGAAGAATGAAGCGCGGAGGTGGCGGCGGCA
GCGGGAGCGGCCACAGGAAGGGTCTGAAAAAATAGAAGAAATGTATACAT
TGAGAAACAGCAATCACTCAATTGAATCCA
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protein sequence of NO19G00800.1

>NO19G00800.1-protein ID=NO19G00800.1-protein|Name=NO19G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAQTSGSPASAAFDRRATVTAASTTATAHYESTHPHHRIANVALGQTAAA
VIASSFVSPAMTIIDMSIIRAQFSKSSISSALRGTTADLLSGRMRWSPAL
GIMSTVYTSTYLTANYTTALCHELDIDYKIPTAVATSLVNITAIAYKDRE
FARMCSKAPTTFPLSSYGLFAMRDGLTVTSSFVLKNTVKDHLIDEHNLEA
HNADLAASFAVPMLAQLFSTPLHILSLDIYSHPQSPFRMRMKEVMKGYSS
VCSGRVMRIIPAFGIGGYLNDIVKEGFEEEQVGRRDGKAVRVPATGERKN
*
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mRNA from alignment at chr19:275265..278915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00800.1 ID=NO19G00800.1|Name=NO19G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=3651bp|location=Sequence derived from alignment at chr19:275265..278915- (Nannochloropsis oceanica)
GGTGCTCGGTATTATTATGAATTTGGATTGGATGTGGAGGGAAATGGTTT
TGCAAGACGGCAGGCCCGTGCTTCCCCAAAAGCACAGCTGAAGGCTTGCT
TCCCTCTCGCTGCTTCGGCAACCGAATGTGGCTCATCCACGCGAGTGCTG
TGCCTTCCCCTTCAATAAAATACATGGCTTTCCCCCGTCTCATACATTTT
CTTACCCTTCTCTACGACAGCACACACACCCGGCACTCAAACCAAACCGT
CCACAAGCGACACCCTGCCCTAGCATGGCCCAGACGTCCGGGTCACCTGC
TTCTGCTGCCTTCGACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCG
CGACAGCCCACTATGAATCCACCCATCCCCACCACCGCATTGCGAATGTG
GCCTTGGGGCAGACGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCC
CGCCATGACCATTATCGACATGTCCATGTACGTTCTCCTTGTGTGTATGT
GGCGCCCCTAGAATTTTCGTAAAGAATATTCCTGAGACGACCAGCTTGGA
CGGGATGGGCTGAAGGGATAGGGAAAAGGGTTTAAGTCTCACGCAGTGGT
GAGTAAATAATAGTCCACGAGGGGGAGGTTTGTCGGGAGTGTGCTTTCCA
TTGTGGCCCCCAAGCTTTTATCTATCGGGAAAATGCAAATGCTGGCACAT
GCCTTTGGTGAGGCCGAGACTGGCATGCATAAGGGAGAGATGGGGGGAGG
GAGGGAAGGTTAGGAGAGGGGGGGGGCACAACATTACTGCCTTGCGCCTT
GTGGCGTGGGATGACAAGGTCTCCCTTTGGTCTGGTTGCGGACAAAGGAT
ATGGATGAAAAGGGAGGAAAGTGGGCCGCTAAAGGCAGAAGAAAGCGAGT
ACGGTAAAGAGAATGCGGGCATTTATGTATATGCAACATGCATTCCATCC
ACGGATTTCCACCATATTAATCCATCCTAACCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCTCTCCTGCCCTC
CATGCAGCATTCGCGCGCAGTTCAGCAAGTCCTCTATCAGCTCAGCCTTG
CGCGGCACCACCGCAGACCTGCTGAGCGGCCGGATGCGATGGAGCCCTGC
TCTGGGGATTATGAGCACTGTGTACACCAGGTGGGGAGTGAGGAACGGAG
GGAAGGAGGGAGGGAGGGAGGGAGGGACGAGGAAGGGAGGGAGGGATGAG
GGAGGGAGGGAGGGAGGGGCCCGTTGATGACGTCTCCCAACCCCATTTTA
CTTTCTCTCCCTCCCTCCCTCCCATCCCGTCGATGTACAAATCCAAATCG
AACTTCTTGTTCACTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGCACCTACCTGACCGCAAATTACACCACGGCCCTGTGCCACGAGCTGG
ACATTGACTACAAGATACCCACGGCCGTGGCTACGTCCCTGGTCAACATC
ACGTACGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATGTATATGC
GCGGCGGAGTTGTTTCACACAAATGTTGCCTCATAAAGTCTTCCTTATTT
CCCTCCCTCCTTCCCTCCCTCCCTCCCGAACCTCCTCCACAGTGCCATCG
CTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGGTACGCTGAGGA
AAATAGCAAGAGAATAGGGGCAGGGAGGAATGGAGGAGGGAGGGAAATAG
GAAACATAAGGGCTCACACCCAACGAGACATTCCGAAAAATCATTTCTTC
TTTCAACCCTCCCTCCCTCCTTCCCTCCCTATAGGCCCCGACCACCTTTC
CGTTATCCTCGTACGGCCTCTTCGCCATGCGCGACGGCTTAACGGTCACT
TCATCGTTTGTGCTCAAGGTAGGAGGAAGGAAGGGAGGGAGGGAGGGAGA
GAAAGAGGAGGGGAGGGGAGGAGGGAGAAAGAGCAGTATGACAACGATGG
GACTGAAGCATCCTCCTTCTCTGTCTCCCTTCCTCCTTCTCTCCCCACCT
CCCTTCTCTCGAGAAATTAGAATACCTTCCAAACCCACCTCATCGACCTC
AATGCAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCGCCCTTTCACCCTCAGAACACCGTCAAGGACCACCTCATCGACGA
ACACAACCTCGAGGCCCATAATGCCGACCTGGCCGCCTCCTTCGCCGTGC
CAATGCTCGCGCAGCTTTTCTCCACCCCCCTCCATGTACGTTAAAAAACC
TTGTGATTCCCTTTAGCCTCGCGCACACATCCTCCCTCCCTCCCTCCCTT
CCTTCCTTCCTCCCTCCCTCCTTTCCCTCTTTTTATTGCGTGGACAGACC
TCGCTTCCTCTGCTGCAACTCCCTCGTCCTCGTTCTTCTCCTCGCCCTCC
TCACCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CACCGGTCCTACAGATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCG
CCATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATG
CTCGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACC
TAAATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGG
GATGGAAAGGCTGTGCGTGTGCCAGCCACGGGAGAGAGGAAGAATTGAGC
TCTCACGCATGAGGAGAAGAGAGGCAGGAACGAGGGAGGGAGGGAGGGAA
TGCCTTGCATCGATTATAGTGAAAGAAGTAGTTGTAGTAGTTGTAAGAAG
TTTAGATCTGGCCCACCGAGAATACAGCGAAGGAGGGAGGAAGGGAGAGT
GGGAGGGGGGTAGAGGAGTGGTCGCCTCTATTGTGATGAAGAGAAAGCAC
ACACCAGCCCAGCACGCATATACATAAATGTATATACATAAACATATATA
TACATTCACGTTCACATGCACACACCCACACACACTTTGTCATGCCGGAG
TCGTTTCGGGAAGGAAGAGGAGGAAGAGAAAGAAACGTGAGGGCTTGCAC
AAAACGAGAGAATTTGAGAGCGGGATGATGGACGAACGGCAGATGGAGAG
TGTAAAGAGAGAGGGGAAGATGATGGTGATGAGTGCCTACAAAAACGCCC
ACGGGGGTGACTTGACCCCCCCCAAAAAAAAGGTAGAGAAAACAAAGCAG
GTCCAAGGTGACTAACAAGAAGCGGTAGTGTATGAGAAGGACGAAGAAAC
CTTGTGATTGGGTGCTCGTTGAGGAGAGAAGGAGGGGAGGGAGGAGGGAA
GGAAGGAAGGAGGGAGGGTGCAAGCGAAATGATTAAAAATGTAGGTATGG
ACTGACTGATACACATCGTTATTTCTGAGATGATTACATAATACATATAT
ATGTAGGTATATTCAAACAATGGCTTGTACGACAAGTGTGATAACGCGAC
AAATATAGTTTCCAACAGTGATGACAGTCGAAAAGAGATTGGAAGAATGA
AGCGCGGAGGTGGCGGCGGCAGCGGGAGCGGCCACAGGAAGGGTCTGAAA
AAATAGAAGAAATGTATACATTGAGAAACAGCAATCACTCAATTGAATCC
A
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Coding sequence (CDS) from alignment at chr19:275265..278915-

>NO19G00800.1 ID=NO19G00800.1|Name=NO19G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr19:275265..278915- (Nannochloropsis oceanica)
ATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTCGACCGCCGAGC
AACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTATGAATCCACCC
ATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGACGGCAGCAGCA
GTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATTATCGACATGTC
CATCATTCGCGCGCAGTTCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCG
GCACCACCGCAGACCTGCTGAGCGGCCGGATGCGATGGAGCCCTGCTCTG
GGGATTATGAGCACTGTGTACACCAGCACCTACCTGACCGCAAATTACAC
CACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGATACCCACGGCCG
TGGCTACGTCCCTGGTCAACATCACTGCCATCGCTTACAAGGACAGGGAA
TTCGCGCGTATGTGCTCTAAGGCCCCGACCACCTTTCCGTTATCCTCGTA
CGGCCTCTTCGCCATGCGCGACGGCTTAACGGTCACTTCATCGTTTGTGC
TCAAGAACACCGTCAAGGACCACCTCATCGACGAACACAACCTCGAGGCC
CATAATGCCGACCTGGCCGCCTCCTTCGCCGTGCCAATGCTCGCGCAGCT
TTTCTCCACCCCCCTCCATATCCTCTCCCTGGACATCTACTCGCACCCGC
AGTCGCCATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCC
GTATGCTCGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGG
CTACCTAAATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGA
GAAGGGATGGAAAGGCTGTGCGTGTGCCAGCCACGGGAGAGAGGAAGAAT
TGA
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Synonyms
Publications