NO19G00790.1, NO19G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00790.1
Unique NameNO19G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr19:272287..274161 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:272287..274161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00790.1 vs.
Match: EWM23580.1 (progestin and adipoq receptor family member 4 [Nannochloropsis gaditana])

HSP 1 Score: 466.5 bits (1199), Expect = 8.500e-128
Identity = 251/387 (64.86%), Postives = 287/387 (74.16%), Query Frame = 0 
Query:   12 SHDEDPIRKQLKILSPLPHVPWDHPPPLATGAGKGNSPASSRHRYGNQAGNDRSSDGVYRRTRARSQKRISFGDGSSFSSHQQQQEEEEEDRVRQKVGKQQRRTGMPAYMYLSRYDAPSYLVGNPYIHGGYRACRTLRESCQGLFYYHNSWLDTWTSCFSWIHAHVLLAVAVWRYGAFDQDWLSAFVFGLFYVHVAWVHAPASIVCHLVGNAGISQHVYELCLEIDYLGIFSASVILSFTQAVFVYPAWATCVNVAMALSLTAYLIAHLRQVVVCHIGRLRMLLEIGSLYQFPLWYQAYLDCASSSPSLPPTLASSLHPSLPTSLLCAVGTTGSLVMGGLTYALHFPECFAPGKFDVWWNSHAVMHVWINVAMFSEFAFLVHMLTRR 399
            S D+     QLKILSPLP VPWD PP L +GAG G SP S R  + +   + R      R TR  SQKR S  D   ++  Q+  EEE E  +    G +      P  + +SR++AP YLVGNP+I  GYR C TLRE+CQGLFY HNSWLDTWTS FSW+H+HVLL VA + YG F +DWLSA VF  FY+HVAW+HAPASIVCHLVGNAGISQHVYELCLE+DYLGIF ASVIL+FTQAVFVYP W T +NV +A+ LTAYL+ H+RQVV+CHIGRLRMLLEIGSLYQ PLW+QAY DC  +SPS+P         SLP SLLCA G TGSLV+GGLTYALHFPE FAPGKFDVWWNSHA+MHVWINVAM SEF FL+HM  RR
Sbjct:   12 SEDDHQGGHQLKILSPLPRVPWDLPP-LPSGAGAGVSPPSVRQCHRDPQ-DVRHEAATCRPTR--SQKRRSVADAKEYT--QRPVEEERERSLSSSQGSR------PPRLSVSRHEAPPYLVGNPFILSGYRRCITLREACQGLFYQHNSWLDTWTSVFSWVHSHVLLFVASYVYGVFRRDWLSAIVFASFYLHVAWIHAPASIVCHLVGNAGISQHVYELCLELDYLGIFIASVILAFTQAVFVYPWWGTLLNVLLAMGLTAYLVTHIRQVVLCHIGRLRMLLEIGSLYQLPLWFQAYQDC--NSPSIP--------SSLPPSLLCACGMTGSLVVGGLTYALHFPERFAPGKFDVWWNSHALMHVWINVAMLSEFLFLLHMFLRR 376
The following BLAST results are available for this feature:
BLAST of NO19G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23580.18.500e-12864.86progestin and adipoq receptor family member 4 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00790NO19G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00790.1NO19G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00790.1.cds1NO19G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00790.1.cds2NO19G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00790.1.cds3NO19G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00790.1.cds4NO19G00790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00790.1 ID=NO19G00790.1|Name=NO19G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
ATGGCTCCATCTTCTGCCTCCAACAAGACGCCGTCTCACGACGAGGATCC
CATTCGAAAACAGCTCAAAATCCTGTCTCCTCTGCCGCATGTGCCTTGGG
ACCACCCCCCGCCTTTAGCCACGGGCGCCGGTAAGGGTAACAGCCCTGCT
TCTTCCCGCCACCGCTACGGAAACCAAGCTGGTAACGACCGTAGCAGTGA
CGGCGTCTATCGCCGGACCCGCGCACGTAGCCAGAAGCGTATTTCATTTG
GTGATGGCAGCAGCTTTTCTTCCCATCAGCAGCAGCAGGAGGAGGAGGAG
GAGGATCGAGTGCGGCAGAAGGTGGGGAAGCAGCAGCGACGGACAGGGAT
GCCGGCTTACATGTATTTGTCTCGGTACGATGCCCCTTCTTACCTGGTGG
GTAACCCTTACATTCACGGAGGGTACCGTGCCTGCCGAACACTGCGGGAA
AGTTGTCAAGGCTTGTTTTACTACCATAATTCTTGGTTGGACACCTGGAC
GAGCTGCTTTTCCTGGATCCACGCTCATGTGTTGCTGGCTGTGGCTGTGT
GGAGATATGGCGCGTTTGACCAGGATTGGTTGAGTGCATTTGTGTTCGGG
TTATTTTATGTGCACGTGGCGTGGGTGCATGCCCCTGCCAGCATTGTGTG
TCACTTGGTGGGGAACGCCGGCATCTCCCAGCACGTGTACGAGCTGTGCT
TGGAGATTGATTACCTGGGCATCTTTTCCGCGTCGGTGATCCTGTCTTTC
ACTCAAGCTGTATTTGTGTACCCCGCGTGGGCGACATGCGTGAATGTGGC
CATGGCCCTGAGCCTGACCGCCTACCTGATCGCCCACCTCCGTCAGGTCG
TGGTGTGTCATATCGGCCGCCTACGTATGCTCCTAGAGATCGGAAGCCTC
TACCAATTTCCTCTGTGGTACCAAGCCTACCTCGACTGCGCCTCGTCCTC
GCCCTCCCTCCCGCCCACCCTGGCTTCCTCCCTCCATCCCTCCTTGCCAA
CCTCCCTGCTATGTGCGGTTGGGACGACGGGATCTTTGGTGATGGGGGGC
CTGACGTATGCTCTCCATTTCCCCGAATGCTTCGCGCCCGGAAAATTCGA
TGTCTGGTGGAATTCCCACGCTGTGATGCACGTCTGGATTAATGTGGCCA
TGTTCTCGGAGTTCGCCTTCCTTGTCCACATGCTTACCCGCCGCCACGCC
TAG
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protein sequence of NO19G00790.1

>NO19G00790.1-protein ID=NO19G00790.1-protein|Name=NO19G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAPSSASNKTPSHDEDPIRKQLKILSPLPHVPWDHPPPLATGAGKGNSPA
SSRHRYGNQAGNDRSSDGVYRRTRARSQKRISFGDGSSFSSHQQQQEEEE
EDRVRQKVGKQQRRTGMPAYMYLSRYDAPSYLVGNPYIHGGYRACRTLRE
SCQGLFYYHNSWLDTWTSCFSWIHAHVLLAVAVWRYGAFDQDWLSAFVFG
LFYVHVAWVHAPASIVCHLVGNAGISQHVYELCLEIDYLGIFSASVILSF
TQAVFVYPAWATCVNVAMALSLTAYLIAHLRQVVVCHIGRLRMLLEIGSL
YQFPLWYQAYLDCASSSPSLPPTLASSLHPSLPTSLLCAVGTTGSLVMGG
LTYALHFPECFAPGKFDVWWNSHAVMHVWINVAMFSEFAFLVHMLTRRHA
*
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mRNA from alignment at chr19:272287..274161+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00790.1 ID=NO19G00790.1|Name=NO19G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr19:272287..274161+ (Nannochloropsis oceanica)
ATGGCTCCATCTTCTGCCTCCAACAAGACGCCGTCTCACGACGAGGATCC
CATTCGAAAACAGCTCAAAATCCTGTCTCCTCTGCCGCATGTGCCTTGGG
ACCACCCCCCGCCTTTAGCCACGGGCGCCGGTAAGGGTAACAGCCCTGCT
TCTTCCCGCCACCGCTACGGAAACCAAGCTGGTAACGACCGTAGCAGTGA
CGGCGTCTATCGCCGGACCCGCGCACGTAGCCAGAAGCGTATTTCATTTG
GTGATGGCAGCAGCTTTTCTTCCCATCAGCAGCAGCAGGAGGAGGAGGAG
GAGGATCGAGTGCGGCAGAAGGTGGGGAAGCAGCAGCGACGGACAGGGAT
GCCGGCTTACATGTATTTGTCTCGGTACGATGCCCCTTCTTACCTGGTGG
GTAACCCTTACATTCACGGAGGGTACCGTGCCTGCCGAACACTGCGGGAA
AGTTGTCAAGGCTTGTTTTACTACCATAATTCTTGGTTGGACACCTGGAC
GAGCTGCTTTTCCTGGATCCACGCTCATGTGTTGCTGGCTGTGGCTGTGT
GGAGATATGGCGCGTTTGACCAGGATTGGTTGAGTGCATTTGTGTTCGGG
TTATTTTATGTGCACGTGGCGTGGGTGCATGCCCCTGCCAGCATTGTGTG
TCACTTGGTGAGGAGAAGGGAGGGAGGGAGGGAGGGGGCAAGATGACTCG
CGCATGGTAGTGTAAGGATCGATGCGAACCATTATTGCACGTGTCTTCAT
TCCTCTCCCTCTCGCTCTCTCTCCCTCCCTTCCTCCCTCCGCTCTACCAC
CGACCTCTACTCTGTGTAGGTGGGGAACGCCGGCATCTCCCAGCACGTGT
ACGAGCTGTGCTTGGAGATTGATTACCTGGGCATCTTTTCCGCGTCGGTG
ATCCTGTCTTTCACTCAAGCTGTATTTGTGTACCCCGCGTGGGCGACATG
CGTGAATGTGGCCATGGCCCTGAGCCTGACCGCCTACCTGGTGAGCAGCC
TGTGGGAGGGAGGGAGGGAAAGATGCAGATACTTTCTTTAATCACTTCCC
TACCATCTATGACGAATTTCGGGTGTTTGCCTCTTTCCATCCCTCCCTCG
GATCACCCACTTTCTCGTAACACACGTCACATTTCCCATGCACACGTCAC
ATTTCCCAAGGGGTGCTCACCAGTACCCCTCGCACTCCCCCCCCCCTCAT
TCCCTCCTTCCTTGTCCCTCCCCCCCCGTGCTTCCTTCTCCCCCCCCTCG
TCCCCGTCCTCAGATCGCCCACCTCCGTCAGGTCGTGGTGTGTCATATCG
GCCGCCTACGTATGCTCCTAGAGATCGGAAGCCTCTACCAATTTCCTCTG
TGGTACCAAGCCTACCTCGACTGCGCCTCGTCCTCGCCCTCCCTCCCGCC
CACCCTGGCTTCCTCCCTCCATCCCTCCTTGCCAACCTCCCTGCTATGTG
CGGTTGGGACGACGGGATCTTTGGTGATGGGGGGCCTGACGTATGCTCTC
CATTTCCCCGAATGCTTCGCGCCCGGAAAATTCGATGTCTGGGTGCGTCC
TTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCT
TTTTTGGGGGGGTTTATAGGTTGTCATCCCCTTCCCCTCTCTCTCTTCAG
CGTGTCAGTTCCTCCATGTAAAAAAATGTGCATGAACCACTGTATTCTCC
CTATCGAAATCACACCCGTACTTATACATCATATTGATTCCTTTAATCTC
CACACGCATCCACACACATACATATACAGTGGAATTCCCACGCTGTGATG
CACGTCTGGATTAATGTGGCCATGTTCTCGGAGTTCGCCTTCCTTGTCCA
CATGCTTACCCGCCGCCACGCCTAG
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Coding sequence (CDS) from alignment at chr19:272287..274161+

>NO19G00790.1 ID=NO19G00790.1|Name=NO19G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr19:272287..274161+ (Nannochloropsis oceanica)
ATGGCTCCATCTTCTGCCTCCAACAAGACGCCGTCTCACGACGAGGATCC
CATTCGAAAACAGCTCAAAATCCTGTCTCCTCTGCCGCATGTGCCTTGGG
ACCACCCCCCGCCTTTAGCCACGGGCGCCGGTAAGGGTAACAGCCCTGCT
TCTTCCCGCCACCGCTACGGAAACCAAGCTGGTAACGACCGTAGCAGTGA
CGGCGTCTATCGCCGGACCCGCGCACGTAGCCAGAAGCGTATTTCATTTG
GTGATGGCAGCAGCTTTTCTTCCCATCAGCAGCAGCAGGAGGAGGAGGAG
GAGGATCGAGTGCGGCAGAAGGTGGGGAAGCAGCAGCGACGGACAGGGAT
GCCGGCTTACATGTATTTGTCTCGGTACGATGCCCCTTCTTACCTGGTGG
GTAACCCTTACATTCACGGAGGGTACCGTGCCTGCCGAACACTGCGGGAA
AGTTGTCAAGGCTTGTTTTACTACCATAATTCTTGGTTGGACACCTGGAC
GAGCTGCTTTTCCTGGATCCACGCTCATGTGTTGCTGGCTGTGGCTGTGT
GGAGATATGGCGCGTTTGACCAGGATTGGTTGAGTGCATTTGTGTTCGGG
TTATTTTATGTGCACGTGGCGTGGGTGCATGCCCCTGCCAGCATTGTGTG
TCACTTGGTGGGGAACGCCGGCATCTCCCAGCACGTGTACGAGCTGTGCT
TGGAGATTGATTACCTGGGCATCTTTTCCGCGTCGGTGATCCTGTCTTTC
ACTCAAGCTGTATTTGTGTACCCCGCGTGGGCGACATGCGTGAATGTGGC
CATGGCCCTGAGCCTGACCGCCTACCTGATCGCCCACCTCCGTCAGGTCG
TGGTGTGTCATATCGGCCGCCTACGTATGCTCCTAGAGATCGGAAGCCTC
TACCAATTTCCTCTGTGGTACCAAGCCTACCTCGACTGCGCCTCGTCCTC
GCCCTCCCTCCCGCCCACCCTGGCTTCCTCCCTCCATCCCTCCTTGCCAA
CCTCCCTGCTATGTGCGGTTGGGACGACGGGATCTTTGGTGATGGGGGGC
CTGACGTATGCTCTCCATTTCCCCGAATGCTTCGCGCCCGGAAAATTCGA
TGTCTGGTGGAATTCCCACGCTGTGATGCACGTCTGGATTAATGTGGCCA
TGTTCTCGGAGTTCGCCTTCCTTGTCCACATGCTTACCCGCCGCCACGCC
TAG
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Synonyms
Publications