NO19G00710.1, NO19G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00710.1
Unique NameNO19G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr19:254434..256887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:254434..256887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00710.1 vs.
Match: CEM35645.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 303.9 bits (777), Expect = 8.700e-79
Identity = 178/464 (38.36%), Postives = 252/464 (54.31%), Query Frame = 0 
Query:   20 LERQVMRRLIAAKGYEGLFDGEVFTRAFSPLLAIGAISPRYLASLLPALPP-SFPFFLLDKATKNAAMVKEVVERREWHQILAERDVVHFP---LPETE----ALTFKYWRFHGHNVRYAVSRVHAHGTSEGGKEGTAEGNKSGGNGIKGDGDVPTLLLVHGFGASSDQWSKCFEALSGLARKDPATFGKGFRIFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVVQSPFFIAGNSIGGFTAASVAADIGPMCQGLILVNTAGKVVSPEEYAAELASREGRTVEESTRSLS--LPSFSGPPKVVLTAFSAGLFWYLQPRVEKICKDLYRHSPQEVGPRLVNNIIRDSCDPGALGVFASGGRLPVPRPTNELMAKFGGPILVTQGILDPLNDAKKRANLLKAAWRDVEVVEIEGGHCVHDERPQETSQAIAQFILRVSGKKTQGGGREKEVAVPVSATVGSG 474
            LE++ ++R+ A    +  F GE FTRAF+  +  G +S R +AS          P   +++         E VE +EWH++LA +D+   P   LP        L  +Y+ + G  VRY  S                          + D   P +LLVHGFGAS+DQW           RK  A   + + +FA+D+LGFGHSEKP +T+TQY W+  +RDF LEVV+ P+++AGNSIGG+ A S+AAD   +C+G IL+N+AG+V +P EY    AS  G T+EE+TR  +  LP +S PP+ +L  F+ GL+ YL+ +   ICK LY  +   V   +++ I+RDS DPGA+GV ASG +LP  R  NEL+AKFG P+L+ QG+LDPLN+A  R    +     +E   +  GHC HDE P E +  + +FI R   K     G            VG+G
Sbjct:  341 LEQRSVQRMAAKSVKDAYFRGEAFTRAFAESVGFGCLSLREIASARRRRRAVELPLRSIER---------EYVEWKEWHRLLAYQDISPSPPSSLPRMSWSDTPLETRYYHWRGFLVRYIKSAT------------------------QHDPAKPKVLLVHGFGASADQW-----------RKTMAVLQQHYEVFAIDMLGFGHSEKPRLTFTQYTWESLLRDFVLEVVRGPYYVAGNSIGGYMAQSLAADTRDLCRGTILLNSAGRVFTPAEYVNVTASLGG-TMEEATRGYAQPLPPYSAPPERLLQLFATGLYLYLKTQTPSICKRLYPTNGTAVEDGIIDCILRDSADPGAIGVIASGAKLPPQRSHNELIAKFGRPVLILQGLLDPLNNATARMEAFQRLGDLIETAPLPAGHCPHDELPTEVANEMVKFIQRTEAKPVVSSGAPPAARDARERAVGAG 759
The following BLAST results are available for this feature:
BLAST of NO19G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM35645.18.700e-7938.36unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00710NO19G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00710.1NO19G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00710.1.cds1NO19G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00710.1.cds2NO19G00710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00710.1.cds3NO19G00710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00710.1.cds4NO19G00710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00710.1.cds5NO19G00710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00710.1 ID=NO19G00710.1|Name=NO19G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGGAGGTGGGGCCCGTGGTCTTTGGAGAGCGGTATTTGCCGTCGTCAGG
GGAGGGGTTGGAGAGGCAGGTCATGCGAAGGTTGATCGCTGCGAAAGGCT
ACGAAGGCCTCTTCGACGGGGAAGTCTTCACACGCGCCTTCTCCCCCCTT
CTTGCCATCGGTGCCATCTCTCCCCGGTACCTCGCCTCCCTCCTCCCCGC
CCTCCCCCCCTCCTTCCCCTTCTTCCTCCTGGATAAAGCGACCAAGAATG
CGGCCATGGTAAAGGAGGTGGTAGAGCGGCGAGAGTGGCACCAGATCCTT
GCGGAACGGGACGTCGTCCATTTCCCTTTACCCGAGACGGAGGCGCTCAC
ATTTAAATATTGGCGGTTTCACGGGCATAATGTCCGCTATGCCGTGTCGC
GGGTCCACGCGCATGGCACTAGCGAGGGAGGGAAGGAGGGCACAGCCGAG
GGGAACAAAAGTGGGGGTAATGGTATCAAGGGAGACGGTGATGTGCCGAC
GTTGTTGCTAGTGCACGGTTTCGGAGCCAGCTCCGATCAGTGGTCAAAAT
GCTTCGAGGCTCTCTCGGGCTTGGCCCGGAAAGACCCGGCGACGTTCGGG
AAGGGCTTCAGGATCTTTGCCCTTGACCTCCTTGGGTTTGGACACAGCGA
GAAGCCGAGCGTGACGTACACGCAGTATTTGTGGCAAGACCAAGTGCGAG
ATTTCGCCCTGGAGGTGGTGCAGAGCCCCTTCTTTATTGCAGGGAACTCG
ATTGGGGGCTTCACGGCCGCGAGCGTGGCGGCGGACATTGGGCCCATGTG
CCAGGGGTTGATTTTGGTGAATACGGCGGGGAAGGTCGTGTCTCCGGAGG
AATACGCCGCCGAGCTCGCCAGTCGCGAAGGACGCACAGTGGAGGAAAGC
ACGCGATCTCTCTCCCTCCCTTCCTTCTCAGGTCCGCCAAAAGTCGTGCT
GACGGCCTTTTCCGCCGGCCTCTTCTGGTACCTCCAGCCCCGGGTTGAAA
AAATCTGCAAAGACCTGTACCGCCATTCCCCGCAGGAAGTGGGTCCTCGC
CTTGTGAACAATATTATTCGGGATAGCTGCGACCCGGGGGCGTTGGGCGT
CTTTGCGTCGGGAGGGCGTCTACCGGTCCCTCGACCCACGAACGAGTTGA
TGGCCAAATTCGGTGGCCCTATTTTGGTGACGCAAGGGATTCTCGACCCA
CTCAACGATGCCAAAAAACGCGCGAACCTCCTGAAGGCCGCCTGGCGGGA
CGTGGAAGTCGTCGAGATCGAAGGCGGGCATTGCGTGCACGACGAACGCC
CGCAAGAAACGAGCCAAGCGATCGCACAATTCATTTTGCGGGTGTCGGGC
AAGAAGACGCAGGGAGGAGGGAGGGAGAAGGAGGTGGCAGTGCCCGTGTC
TGCAACGGTTGGGAGTGGGTGA
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protein sequence of NO19G00710.1

>NO19G00710.1-protein ID=NO19G00710.1-protein|Name=NO19G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MEVGPVVFGERYLPSSGEGLERQVMRRLIAAKGYEGLFDGEVFTRAFSPL
LAIGAISPRYLASLLPALPPSFPFFLLDKATKNAAMVKEVVERREWHQIL
AERDVVHFPLPETEALTFKYWRFHGHNVRYAVSRVHAHGTSEGGKEGTAE
GNKSGGNGIKGDGDVPTLLLVHGFGASSDQWSKCFEALSGLARKDPATFG
KGFRIFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVVQSPFFIAGNS
IGGFTAASVAADIGPMCQGLILVNTAGKVVSPEEYAAELASREGRTVEES
TRSLSLPSFSGPPKVVLTAFSAGLFWYLQPRVEKICKDLYRHSPQEVGPR
LVNNIIRDSCDPGALGVFASGGRLPVPRPTNELMAKFGGPILVTQGILDP
LNDAKKRANLLKAAWRDVEVVEIEGGHCVHDERPQETSQAIAQFILRVSG
KKTQGGGREKEVAVPVSATVGSG*
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mRNA from alignment at chr19:254434..256887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00710.1 ID=NO19G00710.1|Name=NO19G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp|location=Sequence derived from alignment at chr19:254434..256887- (Nannochloropsis oceanica)
ATGGAGGTGGGGCCCGTGGTCTTTGGAGAGCGGTATTTGCCGTCGTCAGG
GGAGGGGTTGGAGAGGCAGGTCATGCGAAGGTTGATCGCTGCGAAAGGTG
TGTCTAGAGGAGGGAGGGAGGGAGGGAGGGAAGGAAGAGAATAGGATACG
TGATGCCCGCCTCGAGCTCAAGCTGGCCACGACTGACGGCCTCCTCCCTC
CCTCCCTCCCTCCACCTCTTTCCTCCTCCCTTCCTCCCTTCCTCCACCTC
TTTCCTCCTCCCTTCCTCCCTTCCTCCCTCTTTCTCTACCAGGCTACGAA
GGCCTCTTCGACGGGGAAGTCTTCACACGCGCCTTCTCCCCCCTTCTTGC
CATCGGTGCCATCTCTCCCCGGTACCTCGCCTCCCTCCTCCCCGCCCTCC
CCCCCTCCTTCCCCTTCTTCCTCCTGGATAAAGCGACCAAGAATGCGGCC
ATGGTAAAGGAGGTGGTAGAGCGGCGAGAGTGGCACCAGATCCTTGCGGA
ACGGGACGTCGTCCATTTCCCTTTACCCGAGACGGAGGCGCTCACATTTA
AATATTGGCGGTTTCACGGTAACGGCCTGTGGGGGGAAAAAAGGAGGGTA
GTAGTGGCTGCTGGGAGGGGAGGGAGGGAAAGAAAGAAAGAGTATGATGA
CGCGCGGGAGGTTTGAAAAAGGGAGAGTAGGAGGGAGCAGGAGGTAGGGG
AGGGGAGAACGAGGGATCTCTACGTCTTGTTCTCTTTTACTGCCAGAATG
CTCACCGCTTTTTCCCTTTCTCTTTTCCTCTTCCTTCTCCCACCCTCCCT
CCCTCCCTTCCTAGGGCATAATGTCCGCTATGCCGTGTCGCGGGTCCACG
CGCATGGCACTAGCGAGGGAGGGAAGGAGGGCACAGCCGAGGGGAACAAA
AGTGGGGGTAATGGTATCAAGGGAGACGGTGATGTGCCGACGTTGTTGCT
AGTGCACGGTTTCGGAGCCAGCTCCGATCAGTGGTCAAAATGCTTCGAGG
CTCTCTCGGGCTTGGCCCGGAAAGACCCGGCGACGTTCGGGAAGGGCTTC
AGGATCTTTGCCCTTGACCTCCTTGGGTTTGGACACAGCGAGAAGCCGAG
CGTGACGTACACGCAGTATTTGTGGCAAGACCAAGTGCGAGATTTCGCCC
TGGAGGTGGTGCAGAGCCCCTTCTTTATTGCAGGGAACTCGATTGGGGGC
TTCACGGCCGCGAGCGTGGCGGCGGACATTGGGCCCATGTGCCAGGGGTT
GATTTTGGTGAATACGGCGGGGAAGGTCGTGTCTCCGGAGGTGAGAGTAT
TGGGTTGGGAAGGGAGGGAAAGGGGGGAAGGAGGGAGGGGAGCGTGGAGG
GAGAAGCTTGAGGCGTTGCTTGGGGGCTGTTTCATTTGATGGTACTGCAA
GTGGAGGAATAGATGAAATCGATGGCATAAATCTTACTATTCGCACTACT
GAGGGGCTCCAGAAAAGAGAGTGTAGATTCACCTAGAAAACAGGAAACGA
TTTTTGTCTCATTTCCTAGCCGTTCATCCTCAAATCTCCACGACTAGGAA
TACGCCGCCGAGCTCGCCAGTCGCGAAGGACGCACAGTGGAGGAAAGCAC
GCGATCTCTCTCCCTCCCTTCCTTCTCAGGTCCGCCAAAAGTCGTGCTGA
CGGCCTTTTCCGCCGGCCTCTTCTGGTACCTCCAGCCCCGGGTTGAAAAA
ATCTGCAAAGACCTGTACCGCCATTCCCCGCAGGAAGTGGGTCCTCGCCT
TGTGAACAATATTATTCGGGATAGCTGCGACCCGGGGGCGTTGGGCGTCT
TTGCGTCGGGAGGGCGTCTACCGGTCCCTCGACCCACGAACGAGTTGATG
GCCAAATTCGGGTAGGTGCCTCCATGCTGTCTCCCTCCCGCCCTCCCCAC
CTCCCTCCCACCCTGCGGCCTATGTTTGCGTGTAGGACATTATGATAGAT
GGCTGTAATCCTGGCTAGTCTGGTCAGTGGACATCGTCGGGAGAATGTCT
GCTAGTCCTTTGCTCTACCAAATAAGTGATGGCCAAAATGAGGGTAGGCA
CATTCCCTGTGGTCTTCCCTCCTCCCTCCCTCCCTCCCTCCCTCATTGCT
TGTTTTAGATTTGTACCCCTATCATTTGCATGATTGCTTTTATTCACACG
AACACACCCTCATTCCCTCCCATACACACATACACGCGCACACAGTGGCC
CTATTTTGGTGACGCAAGGGATTCTCGACCCACTCAACGATGCCAAAAAA
CGCGCGAACCTCCTGAAGGCCGCCTGGCGGGACGTGGAAGTCGTCGAGAT
CGAAGGCGGGCATTGCGTGCACGACGAACGCCCGCAAGAAACGAGCCAAG
CGATCGCACAATTCATTTTGCGGGTGTCGGGCAAGAAGACGCAGGGAGGA
GGGAGGGAGAAGGAGGTGGCAGTGCCCGTGTCTGCAACGGTTGGGAGTGG
GTGA
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Coding sequence (CDS) from alignment at chr19:254434..256887-

>NO19G00710.1 ID=NO19G00710.1|Name=NO19G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr19:254434..256887- (Nannochloropsis oceanica)
ATGGAGGTGGGGCCCGTGGTCTTTGGAGAGCGGTATTTGCCGTCGTCAGG
GGAGGGGTTGGAGAGGCAGGTCATGCGAAGGTTGATCGCTGCGAAAGGCT
ACGAAGGCCTCTTCGACGGGGAAGTCTTCACACGCGCCTTCTCCCCCCTT
CTTGCCATCGGTGCCATCTCTCCCCGGTACCTCGCCTCCCTCCTCCCCGC
CCTCCCCCCCTCCTTCCCCTTCTTCCTCCTGGATAAAGCGACCAAGAATG
CGGCCATGGTAAAGGAGGTGGTAGAGCGGCGAGAGTGGCACCAGATCCTT
GCGGAACGGGACGTCGTCCATTTCCCTTTACCCGAGACGGAGGCGCTCAC
ATTTAAATATTGGCGGTTTCACGGGCATAATGTCCGCTATGCCGTGTCGC
GGGTCCACGCGCATGGCACTAGCGAGGGAGGGAAGGAGGGCACAGCCGAG
GGGAACAAAAGTGGGGGTAATGGTATCAAGGGAGACGGTGATGTGCCGAC
GTTGTTGCTAGTGCACGGTTTCGGAGCCAGCTCCGATCAGTGGTCAAAAT
GCTTCGAGGCTCTCTCGGGCTTGGCCCGGAAAGACCCGGCGACGTTCGGG
AAGGGCTTCAGGATCTTTGCCCTTGACCTCCTTGGGTTTGGACACAGCGA
GAAGCCGAGCGTGACGTACACGCAGTATTTGTGGCAAGACCAAGTGCGAG
ATTTCGCCCTGGAGGTGGTGCAGAGCCCCTTCTTTATTGCAGGGAACTCG
ATTGGGGGCTTCACGGCCGCGAGCGTGGCGGCGGACATTGGGCCCATGTG
CCAGGGGTTGATTTTGGTGAATACGGCGGGGAAGGTCGTGTCTCCGGAGG
AATACGCCGCCGAGCTCGCCAGTCGCGAAGGACGCACAGTGGAGGAAAGC
ACGCGATCTCTCTCCCTCCCTTCCTTCTCAGGTCCGCCAAAAGTCGTGCT
GACGGCCTTTTCCGCCGGCCTCTTCTGGTACCTCCAGCCCCGGGTTGAAA
AAATCTGCAAAGACCTGTACCGCCATTCCCCGCAGGAAGTGGGTCCTCGC
CTTGTGAACAATATTATTCGGGATAGCTGCGACCCGGGGGCGTTGGGCGT
CTTTGCGTCGGGAGGGCGTCTACCGGTCCCTCGACCCACGAACGAGTTGA
TGGCCAAATTCGGTGGCCCTATTTTGGTGACGCAAGGGATTCTCGACCCA
CTCAACGATGCCAAAAAACGCGCGAACCTCCTGAAGGCCGCCTGGCGGGA
CGTGGAAGTCGTCGAGATCGAAGGCGGGCATTGCGTGCACGACGAACGCC
CGCAAGAAACGAGCCAAGCGATCGCACAATTCATTTTGCGGGTGTCGGGC
AAGAAGACGCAGGGAGGAGGGAGGGAGAAGGAGGTGGCAGTGCCCGTGTC
TGCAACGGTTGGGAGTGGGTGA
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Synonyms
Publications