NO19G00610.1, NO19G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00610.1
Unique NameNO19G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr19:233458..235638 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:233458..235638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00610.1 vs.
Match: EWM23564.1 (Mitochondrial carrier domain protein [Nannochloropsis gaditana])

HSP 1 Score: 256.9 bits (655), Expect = 1.200e-64
Identity = 131/167 (78.44%), Postives = 143/167 (85.63%), Query Frame = 0 
Query:  327 MTPCMDIFENNGFLAAWMAGNLAGALNGVALNPASAIKYHTWGQDDASFSRTARLMWRDGGIRPFVKGTAPTIMRDVTFGGVYSVLRNGLLLHLAEARGET----------ASLTSSKGSRRRQRSRGDATTFLLNCIAAGVATTVSGPFNYVRRE-GGRERGREGG 483
            MTPC D FENN FLAAWMAGNLAGALNGVALNPASAIKYHTWG+DDASFSRTARLMWRDGG+RPFVKGTAPTI+RDVTFGGVYSVLRNGLLLH+AE RGE+          +S + S  + RR+RS+GDA TF+LN IAAGVATTVSGPFNYVR E GGRE GR+GG
Sbjct:    1 MTPCTDAFENNSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVRPEGGGREGGRKGG 167
The following BLAST results are available for this feature:
BLAST of NO19G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23564.11.200e-6478.44Mitochondrial carrier domain protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00610NO19G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00610.1NO19G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00610.1.cds1NO19G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00610.1.cds2NO19G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00610.1.cds3NO19G00610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00610.1.cds4NO19G00610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00610.1.cds5NO19G00610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00610.1 ID=NO19G00610.1|Name=NO19G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
ATGCAATACAGGCTCGGGGCCACGTTCGACGACGACCGATTCAGGGAGTA
TGCACGCCTGGCTGTCGAGGTAGGAAAGAGCAGCAGTCCTGCACCCCAAA
CTAGATCACACCCCCAGCCGCTCCCCCGTGCCTGGACGGCCATGGAAGCA
GCAGACGACGATGACTGCGGTGCATTTGTCCCTTCAGCACCTAGCACACC
TCCGCGCCGTCATCTGACCACCAGGCACGCCGCGGCCGCCAAGCCCGCCG
CGGGCTTTCTTCCGTCCCTCCCACCACCGCCATCGTCAGCACAATCATCC
TTGCTAAATGCGCCACCACGGCACACTCACGAAGGCACTAAATGTCCACC
CTGCTCTGCGATCTGGACTGCTGTCACACAGTCGTGGTCTGGTCGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCACGAGAAGCAGCAGCACG
AGAAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCAG
AGCGATCGACAAGGGACATGAGAAGCAGGGGGTAGATTCAGTAGCAACAG
ATGCAGCAGCAACATATGCAACAGCAACAGGAGGAGGAGGAGGACATAGA
ATAGACTTTCCACTACCACCACCATCGACGGCGGCTCCAGCAGCAACAAC
GTCTTACCCACCCCATGCATCGACACACCCTCCCTTCGCCTCTTCATCCA
CCTCCTCCCATCGGATCCCTCCCTCTCCTCTTCCATCCCCCCCCCACCCC
TTCCATCTTCACGGCGACCGTCCACCTTCTTCCCCTCTGTCGACGGTCTC
CAAGAAAAAGGCACGTGGCAAGCGTCCGCGCGACATGCAGGAGCCCTCGT
CCTCAATCAAGCACGAGAGACCCTTCCTGTCAGTGGCGAATTTTCATAGA
CCCTACCAAGGGTTTTGGCAGGCCATCCTTCAACGCACCCTCTCCACGGG
CCTCTACTTTCCACTCGAGGACCTCTTCATGACCCCCTGCATGGACATAT
TTGAAAATAATGGTTTCTTGGCTGCCTGGATGGCGGGCAATTTGGCAGGG
GCTTTGAACGGCGTGGCCCTCAACCCCGCGAGTGCCATCAAGTACCACAC
GTGGGGCCAGGACGACGCGTCCTTCTCACGCACCGCCCGTCTCATGTGGA
GGGATGGGGGGATACGCCCTTTTGTGAAGGGAACAGCACCGACGATCATG
AGGGACGTTACGTTTGGTGGGGTCTACTCGGTGTTGAGAAACGGATTACT
GCTGCACCTGGCCGAAGCCCGGGGAGAGACAGCCTCCCTCACCTCCTCGA
AAGGCTCTCGACGGCGACAACGCAGCAGAGGCGACGCCACCACCTTCCTC
CTCAACTGTATTGCTGCTGGTGTGGCTACTACCGTGTCAGGGCCGTTTAA
TTATGTGAGAAGGGAGGGAGGGAGAGAGAGAGGGAGGGAGGGAGGGAGGG
TGTGA
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protein sequence of NO19G00610.1

>NO19G00610.1-protein ID=NO19G00610.1-protein|Name=NO19G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MQYRLGATFDDDRFREYARLAVEVGKSSSPAPQTRSHPQPLPRAWTAMEA
ADDDDCGAFVPSAPSTPPRRHLTTRHAAAAKPAAGFLPSLPPPPSSAQSS
LLNAPPRHTHEGTKCPPCSAIWTAVTQSWSGRSSSSSSSSSSSSTRSSST
RSSSSSSSSSSSSSSSRAIDKGHEKQGVDSVATDAAATYATATGGGGGHR
IDFPLPPPSTAAPAATTSYPPHASTHPPFASSSTSSHRIPPSPLPSPPHP
FHLHGDRPPSSPLSTVSKKKARGKRPRDMQEPSSSIKHERPFLSVANFHR
PYQGFWQAILQRTLSTGLYFPLEDLFMTPCMDIFENNGFLAAWMAGNLAG
ALNGVALNPASAIKYHTWGQDDASFSRTARLMWRDGGIRPFVKGTAPTIM
RDVTFGGVYSVLRNGLLLHLAEARGETASLTSSKGSRRRQRSRGDATTFL
LNCIAAGVATTVSGPFNYVRREGGRERGREGGRV*
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mRNA from alignment at chr19:233458..235638+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00610.1 ID=NO19G00610.1|Name=NO19G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at chr19:233458..235638+ (Nannochloropsis oceanica)
ATGCAATACAGGCTCGGGGCCACGTTCGACGACGACCGATTCAGGGAGTA
TGCACGCCTGGCTGTCGAGGTAGGAAAGAGCAGCAGTCCTGCACCCCAAA
CTAGATCACACCCCCAGCCGCTCCCCCGTGCCTGGACGGCCATGGAAGCA
GCAGACGACGATGACTGCGGTGCATTTGTCCCTTCAGCACCTAGCACACC
TCCGCGCCGTCATCTGACCACCAGGCACGCCGCGGCCGCCAAGCCCGCCG
CGGGCTTTCTTCCGTCCCTCCCACCACCGCCATCGTCAGCACAATCATCC
TTGCTAAATGCGCCACCACGGCACACTCACGAAGGCACTAAATGTCCACC
CTGCTCTGCGATCTGGACTGCTGTCACACAGTCGTGGTCTGGTCGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCACGAGAAGCAGCAGCACG
AGAAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCAG
AGCGATCGACAAGGGACATGAGAAGCAGGGGGTAGATTCAGTAGCAACAG
ATGCAGCAGCAACATATGCAACAGCAACAGGAGGAGGAGGAGGACATAGA
ATAGACTTTCCACTACCACCACCATCGACGGCGGCTCCAGCAGCAACAAC
GTCTTACCCACCCCATGCATCGACACACCCTCCCTTCGCCTCTTCATCCA
CCTCCTCCCATCGGATCCCTCCCTCTCCTCTTCCATCCCCCCCCCACCCC
TTCCATCTTCACGGCGACCGTCCACCTTCTTCCCCTCTGTCGACGGTCTC
CAAGAAAAAGGCACGTGGCAAGCGTCCGCGCGACATGCAGGAGCCCTCGT
CCTCAAGTTTAATTGTGGTCTTATAGGGGGCGTGACCCAGGCGGGATTGT
TCAATCCTTGGGACAAAGCTCTCTACCTCTCAGTCAAGCACGAGAGACCC
TTCCTGTCAGTGGCGAATTTTCATAGACCCTACCAAGGGTTTTGGCAGGT
AGGTCCGTCGTCCCTCGCTCCTTCCCGCCCTCGCTCCCTCCTTTTTTTCA
TAGTACTTTGACATGTCCCTCCCCCCATCTATCTCTCTTCTTCCCTCCTT
TGAGTCATTCCTCCACGTATTTTCTTCACTGGGCTCTACTCCTTTTTGAA
CGACCTCTTTACGATTCCCTTCTTCCCCTCCCACACTCCAACCTCTCTTC
ATCCCTTCTTCCCTCCCGTCCTCTCCCAGGCCATCCTTCAACGCACCCTC
TCCACGGGCCTCTACTTTCCACTCGAGGACCTCTTCATGACCCCCTGCAT
GGACATATTTGAAAATAATGGTTTCTTGGCTGCCTGGATGGCGGGCAATT
TGGCAGGTACGTCTTCCTCCCTTCCCTCCCTCGTTCCCTCCCTCCCTCCC
CCCCCCTCTGCATAGTTCATGAATCTCTACCTTGAAGTATTTCGAACGTA
AGACAATGAAATAATCAAGAAACTATGGATATATATATATATATATATAT
GTAATTAACCAATCAACCATGATATATATATGTATATACATATATCCATA
TGTATAATTAACCAATCAACGAATCTCTAATTTATTGGTGTCCTGGTTTG
ATCACACACAGGGGCTTTGAACGGCGTGGCCCTCAACCCCGCGAGTGCCA
TCAAGTACCACACGTGGGGCCAGGACGACGCGTCCTTCTCACGCACCGCC
CGTCTCATGTGGAGGGATGGGGGGATACGCCCTTTTGTGAAGGGAACAGC
ACCGACGATCATGAGGGACGTTACGTTTGGTGGGGTCTACTCGGTGTTGA
GAAACGGATTACTGCTGCACCTGGCCGAAGGTGCGTCCGTAATTTTAGAC
TTTGTTTTTACCCTTTTTTTTTTTTTTTAATTTTTTTTTTCCCCTAAAAT
ATTTACTTGAATAAATTTTCATTTGGGTTCTCATTTCCTGCTTTGGAACC
TGATATTCTCCCTCCTTCCCTTCTTCCCTCCCTCTCTCCCCAGCCCGGGG
AGAGACAGCCTCCCTCACCTCCTCGAAAGGCTCTCGACGGCGACAACGCA
GCAGAGGCGACGCCACCACCTTCCTCCTCAACTGTATTGCTGCTGGTGTG
GCTACTACCGTGTCAGGGCCGTTTAATTATGTGAGAAGGGAGGGAGGGAG
AGAGAGAGGGAGGGAGGGAGGGAGGGTGTGA
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Coding sequence (CDS) from alignment at chr19:233458..235638+

>NO19G00610.1 ID=NO19G00610.1|Name=NO19G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr19:233458..235638+ (Nannochloropsis oceanica)
ATGCAATACAGGCTCGGGGCCACGTTCGACGACGACCGATTCAGGGAGTA
TGCACGCCTGGCTGTCGAGGTAGGAAAGAGCAGCAGTCCTGCACCCCAAA
CTAGATCACACCCCCAGCCGCTCCCCCGTGCCTGGACGGCCATGGAAGCA
GCAGACGACGATGACTGCGGTGCATTTGTCCCTTCAGCACCTAGCACACC
TCCGCGCCGTCATCTGACCACCAGGCACGCCGCGGCCGCCAAGCCCGCCG
CGGGCTTTCTTCCGTCCCTCCCACCACCGCCATCGTCAGCACAATCATCC
TTGCTAAATGCGCCACCACGGCACACTCACGAAGGCACTAAATGTCCACC
CTGCTCTGCGATCTGGACTGCTGTCACACAGTCGTGGTCTGGTCGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCACGAGAAGCAGCAGCACG
AGAAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCAG
AGCGATCGACAAGGGACATGAGAAGCAGGGGGTAGATTCAGTAGCAACAG
ATGCAGCAGCAACATATGCAACAGCAACAGGAGGAGGAGGAGGACATAGA
ATAGACTTTCCACTACCACCACCATCGACGGCGGCTCCAGCAGCAACAAC
GTCTTACCCACCCCATGCATCGACACACCCTCCCTTCGCCTCTTCATCCA
CCTCCTCCCATCGGATCCCTCCCTCTCCTCTTCCATCCCCCCCCCACCCC
TTCCATCTTCACGGCGACCGTCCACCTTCTTCCCCTCTGTCGACGGTCTC
CAAGAAAAAGGCACGTGGCAAGCGTCCGCGCGACATGCAGGAGCCCTCGT
CCTCAATCAAGCACGAGAGACCCTTCCTGTCAGTGGCGAATTTTCATAGA
CCCTACCAAGGGTTTTGGCAGGCCATCCTTCAACGCACCCTCTCCACGGG
CCTCTACTTTCCACTCGAGGACCTCTTCATGACCCCCTGCATGGACATAT
TTGAAAATAATGGTTTCTTGGCTGCCTGGATGGCGGGCAATTTGGCAGGG
GCTTTGAACGGCGTGGCCCTCAACCCCGCGAGTGCCATCAAGTACCACAC
GTGGGGCCAGGACGACGCGTCCTTCTCACGCACCGCCCGTCTCATGTGGA
GGGATGGGGGGATACGCCCTTTTGTGAAGGGAACAGCACCGACGATCATG
AGGGACGTTACGTTTGGTGGGGTCTACTCGGTGTTGAGAAACGGATTACT
GCTGCACCTGGCCGAAGCCCGGGGAGAGACAGCCTCCCTCACCTCCTCGA
AAGGCTCTCGACGGCGACAACGCAGCAGAGGCGACGCCACCACCTTCCTC
CTCAACTGTATTGCTGCTGGTGTGGCTACTACCGTGTCAGGGCCGTTTAA
TTATGTGAGAAGGGAGGGAGGGAGAGAGAGAGGGAGGGAGGGAGGGAGGG
TGTGA
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Synonyms
Publications