NO19G00400.1, NO19G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00400.1
Unique NameNO19G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length411
Alignment locationchr19:156281..157242 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:156281..157242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00400NO19G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00400.1NO19G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00400.1.cds1NO19G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00400.1.cds2NO19G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00400.1.cds3NO19G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00400.1 ID=NO19G00400.1|Name=NO19G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=411bp
ATGCTTGAAAGCGGCAGCAACAGAAGACGGCCTCGTCCATGTCAGCAGGG
TAGGAAGGCTAACACCACCATCTTCATAGAACCCGTCAATGCAGTAAACA
GCGGGGCCCTTGCATCACCGCAAAATGGTGCAGATGCGCACTTCAAATCT
GCCACTCGACCCTACACGGCAAGACCCATACTCCTATATCGCACCTGTCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTATATCCCAAGCTTTTGTC
GCCCCCCTGCTCGCCTTTCTGACGGTCCCCTCTCTCGCCTGATGGCCGGG
GGCAAGGAGAGGGCGATGGTGGCGACGACGTGCCCCCTTCTGACAGCACC
GATAGCGAAGGCTTCGGCGGCTCCGGTCTCTCCCCCAAAGAAGCAATTAT
TACCATTTTAG
back to top

protein sequence of NO19G00400.1

>NO19G00400.1-protein ID=NO19G00400.1-protein|Name=NO19G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MLESGSNRRRPRPCQQGRKANTTIFIEPVNAVNSGALASPQNGADAHFKS
ATRPYTARPILLYRTCHSSSSSSSSSIYIPSFCRPPARLSDGPLSRLMAG
GKERAMVATTCPLLTAPIAKASAAPVSPPKKQLLPF*
back to top

mRNA from alignment at chr19:156281..157242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00400.1 ID=NO19G00400.1|Name=NO19G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=962bp|location=Sequence derived from alignment at chr19:156281..157242- (Nannochloropsis oceanica)
ATGCTTGAAAGCGGCAGCAACAGAAGACGGCCTCGTCCATGTCAGCAGGG
TAGGAAGGCTAACACCACCATCTTCATAGAACCCGTCAATGCAGTAAACA
GCGGGGCCCTTGCATCACCGCAAAATGGTGCAGATGCGCACTTCAAAGTA
GGTGGTCCAGGAAGCACTGTCACGCCCCAGTCTGGGATGCTCACCGTGGA
GAAAGAGCGTGCGAAAGTGTGCAGCGCGTGGCCATCATCATGTGTCCCCT
TTATTCGAGAGCAACACCGGCTCCCATCCGCATCTGCCGCTGTCTCTTCA
CCGACTTTATCAAGAAAGCTAACAATAACCATCCCCCTCTTCATGCCTTA
TAATCTACTTCTACTTCCACTCGTCGTCCTGCTGCTTTTAAACAGTGACT
GTCGTGGTGGCTGTCTCGGCATCGTTGGTGTCAAGGCCTTTAATCTTTCA
CCTCAGTCTGCCACTCGACCCTACACGGCAAGACCCATACTCCTATATCG
CACCTGTCACAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTATATCCCAA
GCTTTTGTCGCCCCCCTGCTCGCCTTTCTGACGGTCCCCTCTCTCGCCTG
ATGGCCGGGGGCAAGGAGAGGGCGATGGTGGCGACGACGTGGTACGTTGA
TCAATCTCACCGTTTCTTAACCTGTATGCTTGGGCTTCCACAATTTCCCC
TGATAGAGACGGATTTGCCTCGCAGGCATACTTTCTACTTTACTTGGAAT
AAGATCAGCCTGATTGTCGCGTGCGATAACAAAGCTTACCCGTCTCCTTT
TCCTCCTTTTTCTCCATCTCCTTATCCCATTACCCTCTTTCCTTCCTTCC
CTGCCCCCCTCCTTTTCCCCCCACCCCGCACAGCCCCCTTCTGACAGCAC
CGATAGCGAAGGCTTCGGCGGCTCCGGTCTCTCCCCCAAAGAAGCAATTA
TTACCATTTTAG
back to top

Coding sequence (CDS) from alignment at chr19:156281..157242-

>NO19G00400.1 ID=NO19G00400.1|Name=NO19G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr19:156281..157242- (Nannochloropsis oceanica)
ATGCTTGAAAGCGGCAGCAACAGAAGACGGCCTCGTCCATGTCAGCAGGG
TAGGAAGGCTAACACCACCATCTTCATAGAACCCGTCAATGCAGTAAACA
GCGGGGCCCTTGCATCACCGCAAAATGGTGCAGATGCGCACTTCAAATCT
GCCACTCGACCCTACACGGCAAGACCCATACTCCTATATCGCACCTGTCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTATATCCCAAGCTTTTGTC
GCCCCCCTGCTCGCCTTTCTGACGGTCCCCTCTCTCGCCTGATGGCCGGG
GGCAAGGAGAGGGCGATGGTGGCGACGACGTGCCCCCTTCTGACAGCACC
GATAGCGAAGGCTTCGGCGGCTCCGGTCTCTCCCCCAAAGAAGCAATTAT
TACCATTTTAG
back to top
Synonyms
Publications