Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr19 genome chr19:136111..140607 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00330.1 vs.
Match: EWM23521.1 (hypothetical protein Naga_101309g1, partial [Nannochloropsis gaditana])
HSP 1 Score: 235.0 bits (598), Expect = 1.100e-57
Identity = 190/409 (46.45%), Postives = 240/409 (58.68%), Query Frame = 0
Query: 679 SSPSSSFSTTAVSTLLPRGLLLYLEVLAAERAAIGTTAHGTKKRMEEEGEEKEEEEGGKEGEGCRRMWIDDADNGPKEGQEKMEIEGGGEGGKMAAAAFFPPARPAVDFPGPS----------SSRKARPKNSSKDTLAAPPPSSPPSSSSSSSALLSLSQLLLPRRLSSGGLGAGREGRKEGGAIGLPHYH-TPPQDDQYSTFNRLPFLLPSLTRNSTLSSTNASASSSFHH----FPPPSLPPSFLPDPRNLVEITPLAFLPGARITRYLGSISLHFVKESSMAAMVASTGGGGGRGGGKEAGGGGGGGGEAMWGNLMQVFLVEVNAMVRAHVAGLGANALVSYRLVMQESGGRVYRSTTYNMISVRGDAVLVCSSASGGGREEGREGGMGARDLGYGGRRSQEEMG 1073
SS SSS + A STLLP LL YL + A + ++R E EGE E + G EG+G + ++G +EG E G+M A P AR + P + +R+ P ++ +L PPS PPS S S+S+L LS LLPRRLS GG G+E EGG G H T S +N LP+LLPSL+R+ TL S+ AS SSS PPSLPPSF P PR VE++PL++LPG+ + ++LG +SLHFVKESS+ A+ + G GGG GGG+E G GG G G L+QVFLVEVNAMVRAHVAGLG NAL+SYRLV QE GGRVYRSTTY+M+SV GDAV V ++A GG EE +GG ++ G RR + E G
Sbjct: 2 SSSSSSLAWPASSTLLPPSLLQYLHAILASK----------RERPEVEGEGGREGKDGFEGQG-------EGEDGGEEGLE----------GRMQALPL-PGARHGLSHPYQAVNEQQDDRGLQTREGYPSHACPPSL---PPSLPPSPSLSTSSLSHLSHRLLPRRLSGGGDEGGKEDGGEGGREGGREGHSTAGTTSSLSQYNPLPYLLPSLSRHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAV--AVGSGGGSGGGREGGRGGRG---VTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEANAREGGGEE--DGGKEGKEKKEGPRRGRGEGG 372
The following BLAST results are available for this feature:
BLAST of NO19G00330.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 1.10e-57 / Id = 46.45 Sequence EWM23521.1
Match Name E-value Identity Description
EWM23521.1 1.100e-57 46.45 hypothetical protein Naga_101309g1, partial [Nanno... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO19G00330.1 ID=NO19G00330.1|Name=NO19G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3219bp back to top protein sequence of NO19G00330.1
>NO19G00330.1-protein ID=NO19G00330.1-protein|Name=NO19G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1073bp back to top mRNA from alignment at chr19:136111..140607-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00330.1 ID=NO19G00330.1|Name=NO19G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=4497bp|location=Sequence derived from alignment at chr19:136111..140607- (Nannochloropsis oceanica)ATGCGGATCGTCCCTTGTCAG GTAGGGGGGGAGGGAGGGGCAGAGGGAGG
CAGGTTGGATGGGGGGGGGGAAGGAAGGAAAAGAAAGGGTAACAGAAGGT
AAAATGAGGGAGGGAAGGAGGGCGGGAGAGAGGATGGAGACAGGCGGAAG
GCTGAAGGCCAAGCAAGATACCCCTTCATACGCCCGTGTGTTGCATGACA
GTCTAAAACAATATGTTGGCGCCCGATACAATGTGCTGGAAACACACAGG
TGTGTGGGCGGAAATGGGTGCCGGAGGGATTGCTTGCCACCATCGAGCCG
CCGGTCCGTTTGCTGACGCGGGGGGAGGGGGTCTTGATTGAG GTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAACCATGCACGGTGGAAATAAAGAGGCA
TTTCTGTGGAGAGGGGTGCTTGACGTCTCTTCCCTCCCTCCCCCCTTCCC
TCCCTCCCCCCACCCTCTCTTCCTTAGGCCCGCGTCTGTCGCCCCCGAGC
CCGAGGCACGGGCGAGTTGGACGCCCTCCAAGTCTCTCACGCCCTGCCTT
TCCTCGAGTATGATCTCCACCGACAGCTGATGCTCAAGATGAGGGTCTTG
GGCGTCAATGCCTGCTTCGCCATTCGCAGCCAGCTACAG GTCATTTGGGG
CTGGACCTCCTCCCTTCCCTTCCCTCCCCTCCCTCCTTTCCTTCACCTGT
TCATTTCCACCACCTTTCCTTCCCTCCCGCTCTCAGGTCGGTGCATCCAT
CATTCTTGGAACCCTCAGTGGGACTGGCACTTATGTTTCGGCCTTACCCC
CACTAG GTGAGAGAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGGGGGAC
GGACCAAAAGCTCACTTTTTTGTTGTGTTTTTACTCACAACTTTTTCGCA
CACACCCAGCGCCGCTGGCCATTCGCCGCACATTTGCCGTGAAAGATGAG
GAAGACAG GTAAATGAGGAGGTCGACGGTGAGGGACGAAAAGAGGAAGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGAAAGGGAGAAGGGAAGGGT
AGTTTTCTTCCATCTTTCTCATCCCACTTGTTGAGGCATGGTCCTGGGGA
AAGCTTAAATCAGATGAAATGAATGTCTTTCCTTACGGGGAAAAAGGTGG
TAAGGGTGTAGAGGGAGGGAGGGTAGGAGGTTCTACTTTCTCACCTGTTT
CTAAATTTGATCTCCCTTATCCCCTCCAAACCCATCACCAGGGCACTGGT
GGACATGCAGAGGAAGATAGTGGAGTTGTCGGTCCGGAATGGGGAGAGAA
TGAAAAATGCGGAGGAGAGGGATGTGATGATGAGGCAGGAAGGGAGGAAG
GGGAAGGGAGGGGAAAGGGGGAGGAGGAAGGAGCGTGTGGTGGCGGTAGG
AAATGTGGGCGACGGAGAGGGGGAGGAGGAGGGAGAGGAGGGGGAGAAAA
AGGACGATACGAGAGACCGCCGACAGTGCCGAGGGGAAAAGGCAGCGGCA
AGGAAGAGGAAGAAGGTGAAGAAAGAAGAGAAGGAGGGAGTAGGAGGAAG
GGAAGAGAAGGAAGAGGAGGAGGGGATAGGAGGAAGGGAAGTTAAGGAAG
AGGAAGAGGAGGATGAACGGTGGAAGAGAAGCGATGGGAAGGTAGGAACA
GTGCGGCGCGCGTCTTCTTTCCTCTCTTTGCCCGCGAGCTCAGAGCAGAG
GATTGTGAGGGGAGTGGGAGACGGACAGAAGAGGGCGAACGACGAGAAAG
AGAAGAAAGAGAAGAGGAGGAGGAATGAGGAGAGGGAGAAGAGGAGGAGG
AAGAAAATGCAGCAGCATGAGGAGGGAGGAAGGGAAGGGATTGTGGGAGG
AAGGACGGTACCCGGAGGAGAAGCAGAAGAAGAAGGAAGGAAGGGGGGAG
GAGAGCAAGGTTCACATCAACATCTCCTGAAAACCTTCCCCTCTTTGTTA
TCTTTTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCGTCGTCCTTAAG
CAATGACGGCGCTAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAATAGTA
ATAGTAGTAGTAGTAGTAGTAATAGTAGTAGTAGTAATGGCAGCAGGACA
AGCAGCAGCAGTAGTGGCAGGAGTAGTGGCAGCAGTAACAGCAGCAGCTC
CTCCTCCTCTGCCTCCTCCTCGTCTTCTGAAGACGAGGAGGAGGCAGAGG
AGGAGGGGAGGGAGGGTGTAGTGAGATCTAAACGGTGCCAGTCGCCATGC
GAAGGGTCTGAGGAATGGGAGGAGGAAGATGGGGAAGAAGAGGAGGAGTA
CGATGATGGTGAAGAGGATGGAGAGGAAAAGAGTCGATTGCTGCGCCGAC
GTCGGGTAGGGGATGGAGGGAGGAGGGGAAGGACTAAGGGAGGGCCTCAT
CATCGCCATCATCATCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGC
ACCATTTTTGTTGGAGATTGATGATGAGGTAGACGAGGACATCTTGGCTG
CCCTTCTGGAGCAGGAGCCACCCAAGG GTAAGGAGGGATTGATTGGGAAG
GAAGGAAGGAAGGGGAGAGGGAGGGATGAATAATGGCACTCAAAAAATAT
TTTCTTTTATTAAAATGTTCTCCTCTTTTCTTCGTTTTCCTCCTCTTCCT
CCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTTTAATCCTCCTCCTTCCAG
GCATCCTACTCCAGACCACCGAGCGGCCCATCTTCTCCTCCCTCCCTTCT
TCTCCTGCTTCCACCCCAGTGCTCATAGGCCTCAAGCGGGTCAAGCTGGG
AGAAGGGCGGCGACGGATGAACCACGATATGGGCCGACTGTTTCGAAAAG
TGTACGGTCGGTTGTGCTTCAAG GTAGGGAGGGATTGAGGGAGGAAGGGG
GGGAACGAGGGAGGGAGGGGAGGTGACGCTGCTTTCCTATTTGTTTCGAC
ATGTGCAGAACTATGGTATCAACTCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGGCACGTCATCTAATCCCCTGCGTGCTGCAGGGCATTTCCACCCGTGT
GAATCTCATCGACGACAAACCAG GCGAGAAGATAGTGGTAGGGATGGAGG
AAGGAAGGGGGAGGGCAAGGGAAAAAGAGAGAACATGCTTCACCTGCTTA
CTCAACTCTTCCTCAACCACACACACACACACTCTTTTTTTCTTCCCCTC
AGGAGATAGTCGTTACATGTGCGGTCGTCCAGCTACATCACTCCTCCTGC
GCCACCCCCTCCTCTGCGCCCTCTCGCTCTCCCTCCCTCCCTCCTTCTTT
CCTCCCCCCTCCTCCTCCCCATCCTCCTCCTTCTCCACCACGGCAGTTTC
TACTCTTTTGCCCCGCGGCCTGCTTCTATACCTAGAAGTACTCGCCGCCG
AGCGCGCAGCAATTGGCACCACAGCTCACGGGACCAAAAAGAGGATGGAG
GAGGAAGGGGAGGAGAAGGAAGAAGAGGAGGGAGGGAAAGAGGGCGAGGG
GTGTAGGAGGATGTGGATCGATGACGCAGACAACGGCCCAAAGGAGGGAC
AGGAAAAGATGGAGATTGAAGGAGGGGGTGAGGGCGGGAAGATGGCTGCT
GCTGCTTTCTTCCCTCCTGCTAGGCCTGCAGTCGATTTCCCAGGCCCCTC
ATCATCGCGAAAAGCGCGGCCAAAGAACAGCAGCAAGGACACCCTCGCCG
CCCCCCCTCCTTCCTCCCCTCCCTCCTCTTCCTCCTCTTCATCCGCCTTG
TTGAGCTTGAGTCAGCTTTTACTACCGCGCCGACTGTCCAGTGGAGGCCT
GGGAGCAGGAAGGGAGGGGCGGAAAGAGGGAGGGGCAATAGGCCTGCCTC
ACTATCATACCCCTCCTCAAGATGATCAATACTCTACCTTCAATCGTCTC
CCCTTCCTCCTCCCCTCCCTCACCCGCAACAGCACTCTCTCTTCTACCAA
CGCCTCCGCTTCCTCCTCCTTTCATCATTTCCCTCCCCCCTCCCTCCCGC
CCTCCTTCCTCCCTGATCCTCGAAACCTGGTCGAGATCACACCTCTTGCT
TTCCTACCTGGTGCTCGTATAACGCGTTATCTCGGTTCTATTTCCCTTCA
CTTTGTCAAGGAAAGTAGCATGGCCGCGATGGTAGCTTCGACGGGGGGAG
GCGGAGGAAGGGGGGGAGGGAAAGAGGCAGGTGGAGGTGGAGGTGGAGGT
GGAGAGGCAATGTGGGGGAACTTGATGCAGGTGTTTTTGGTGGAGGTGAA
CGCGATGGTGAGGGCCCACGTGGCGGGCTTGGGGGCCAATGCATTGGTAT
CCTATCGGCTTGTCATGCAAGAGAGTGGAGGGAGAGTGTATAGAAGCACG
ACATATAATATGATCAGCGTGAGAGGGGATGCGGTCCTGGTGTGTAGTAG
TGCTAGTGGAGGAGGGAGGGAAGAAGGGAGAGAGGGGGGAATGGGAGCGA
GGGATCTGGGTTATGGCGGCCGAAGGAGTCAGGAGGAGATGGGATAG back to top Coding sequence (CDS) from alignment at chr19:136111..140607-
>NO19G00330.1 ID=NO19G00330.1|Name=NO19G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=3219bp|location=Sequence derived from alignment at chr19:136111..140607- (Nannochloropsis oceanica) back to top