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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:71642..75840 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00190.1 vs.
Match: EWM22429.1 (Beta-lactamase/transpeptidase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 389.4 bits (999), Expect = 1.600e-104 Identity = 200/448 (44.64%), Postives = 284/448 (63.39%), Query Frame = 0
Query: 10 LAGIFALLVLSLA-SVGTRAIEVASSPEEMGMATWRLDQITQDLQKLVHDDIVPGAAFIVLRGGKYVYHGEVGYSDKETMTGFRTNSICRLLSMSKPVAAVAIMKLIEDGKLAMDDPLSKYLPEWKDMRVVNPNKGYDGWNADGTPYSEPAHRQITIFDLLTHTSGMSYGYGFGNASMVDSLYPANWRVPMMRMDEFSRTIAKVPLLFEPGERWRYSYSYDVLGVVLMKVTGISPDVWMHDNIFKPLGMVDTAFSVPMSKINRYSTSYSAMSNGRLQFIFRPRLDYV-SYGPPNFKSLGGGIVSTAKDFARFGQMLLNGGTLDGVTILSSESVDTMWRNYLPASHLPMDLNGWASDVNTGYGLGFTIAVNHPVLEIENWDEYKGDKRTGSIGWGGGAQTNFALNANDDTVIIYMSQKIGGP-DIAFQGAVVKGVNEAIIGPSPRVQAG 455
+ G+ AL+ L + +GT SPE + RL++IT+DLQ V + +PGAAF V R GK V+ VGY D+E M N+I RL+S +KP+ A +M L+E +++DDPL KY P+++++RV+ +DG + PA+R ITI DLL HT+G+ YG GF + S L A +P ++ F A PL ++PG WRYS+SYDVLG V+ +VTG SPD+W+ N+F+PL M DT F VPM KI R++ +Y+ + L I RPR+D + ++ PP F S G GIVST D+ RF ML+NGG +DG IL SE+VD MWRN L S LPMDLNGW SD+NTG+G GFT++ P+ +++ W ++KG RTG+IGWGGG TN+ +A++D ++++ +Q++ P FQ VV+GV ++I G SPR G
Sbjct: 11 VGGLTALMCLGIVRGIGTM------SPEAANLDRQRLEEITRDLQAQVSRNQLPGAAFQVYRAGKLVFQDAVGYQDRELMRPMGMNTIVRLMSQTKPLVAAGVMILLERDLISLDDPLWKYYPKFRNVRVLK---------SDGAKETVPANRDITILDLLLHTAGLGYGGGFNDPSGDSPL--ATMEIPFETLEYFMNEQASKPLYWQPGTTWRYSWSYDVLGYVIKRVTGQSPDIWLRQNLFEPLEMYDTDFYVPMDKIGRFAVAYTMTRSNILIPIIRPRMDPIQAFNPPPFISCGSGIVSTLHDYGRFTMMLMNGGVIDGKRILKSETVDMMWRNQLDLSLLPMDLNGWQSDMNTGWGFGFTVSAPGPLPDVD-WSKHKGSNRTGAIGWGGGMMTNWIASADNDLIVLFATQRLATPIPNTFQEIVVQGVMDSIKGNSPRKLPG 440
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G00190.1 ID=NO19G00190.1|Name=NO19G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
CGACAGATCAGGCACGCAGCGAGCCTTAGGGACTCGCCACTCTGTCTTGC
GCGACCATGCCTTCTCTTTCCAGCTACCGAAAGCTGGCAGGTATCTTCGC
GCTACTCGTACTATCCCTCGCCAGCGTTGGGACCCGGGCAATCGAAGTCG
CGAGCTCCCCCGAGGAGATGGGCATGGCCACCTGGCGTCTCGACCAAATC
ACGCAGGATTTGCAGAAACTCGTTCATGATGATATAGTCCCTGGAGCCGC
TTTCATAGTCTTGCGTGGAGGAAAGTACGTGTACCACGGCGAGGTGGGCT
ACTCCGACAAGGAGACCATGACGGGCTTCCGAACTAACAGCATTTGCCGC
CTCCTCTCCATGAGCAAGCCCGTGGCGGCCGTCGCCATCATGAAGCTGAT
CGAGGACGGCAAGTTGGCGATGGATGACCCCCTCTCCAAATACTTGCCCG
AGTGGAAAGACATGCGCGTAGTGAACCCCAACAAAGGCTATGATGGGTGG
AACGCCGACGGCACCCCCTACTCGGAGCCCGCCCACCGACAAATCACGAT
CTTCGATCTCTTGACACACACCTCGGGCATGTCCTATGGCTATGGATTTG
GCAACGCCTCGATGGTGGACTCGCTGTACCCCGCGAACTGGCGCGTGCCC
ATGATGAGAATGGACGAGTTTTCGCGCACTATTGCCAAGGTGCCCCTCCT
GTTCGAGCCCGGGGAGCGATGGCGCTATTCGTACTCTTACGACGTGCTGG
GGGTGGTGCTGATGAAGGTCACTGGCATCTCCCCCGATGTTTGGATGCAT
GACAATATCTTCAAGCCCCTGGGGATGGTCGACACCGCCTTTTCAGTGCC
CATGTCCAAGATCAACCGCTACAGCACCTCCTACTCGGCCATGTCCAACG
GCCGCCTGCAGTTCATTTTCAGGCCCCGCTTGGACTACGTATCCTACGGA
CCTCCCAACTTCAAGAGCCTCGGCGGCGGCATCGTCAGCACGGCCAAGGA
CTTTGCTCGCTTCGGACAGATGCTCTTGAACGGCGGCACCCTGGATGGGG
TCACCATCCTCTCCTCCGAGTCCGTCGACACCATGTGGCGCAACTACCTG
CCTGCCTCCCACCTACCCATGGACCTCAACGGCTGGGCAAGCGACGTCAA
CACCGGCTACGGCTTGGGCTTTACCATTGCCGTCAATCACCCGGTGCTAG
AAATTGAGAATTGGGATGAATACAAAGGCGACAAGCGCACGGGCTCTATC
GGGTGGGGCGGCGGCGCGCAGACAAATTTCGCTCTGAACGCCAACGACGA
CACGGTCATCATCTACATGTCTCAGAAGATCGGTGGGCCTGATATCGCCT
TTCAGGGGGCTGTCGTCAAGGGCGTGAACGAGGCCATCATCGGACCGTCC
CCTCGCGTGCAAGCCGGCGGCTTCTCCACCTACACGGGCGTCCCCTCGGA
GGAGGAGAAGACGTTCGGGAACAACGCGGCCTCCAGCCTCATGGAGGTAT
ACTGGAATTAATACCTGCGGCACGGGACCCTGATGGGAGCGAGCACAGGA
GCATCAGCGAATGCAAGGGAAGGGGGGGGGCGAGCGAGGGAGGGAGGAAG
GGAGGGTTGAGGGGAGGAGGGATGGCTTTGGGGATTTGTATTGTAAAG back to topprotein sequence of NO19G00190.1 >NO19G00190.1-protein ID=NO19G00190.1-protein|Name=NO19G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPSLSSYRKLAGIFALLVLSLASVGTRAIEVASSPEEMGMATWRLDQITQ
DLQKLVHDDIVPGAAFIVLRGGKYVYHGEVGYSDKETMTGFRTNSICRLL
SMSKPVAAVAIMKLIEDGKLAMDDPLSKYLPEWKDMRVVNPNKGYDGWNA
DGTPYSEPAHRQITIFDLLTHTSGMSYGYGFGNASMVDSLYPANWRVPMM
RMDEFSRTIAKVPLLFEPGERWRYSYSYDVLGVVLMKVTGISPDVWMHDN
IFKPLGMVDTAFSVPMSKINRYSTSYSAMSNGRLQFIFRPRLDYVSYGPP
NFKSLGGGIVSTAKDFARFGQMLLNGGTLDGVTILSSESVDTMWRNYLPA
SHLPMDLNGWASDVNTGYGLGFTIAVNHPVLEIENWDEYKGDKRTGSIGW
GGGAQTNFALNANDDTVIIYMSQKIGGPDIAFQGAVVKGVNEAIIGPSPR
VQAGGFSTYTGVPSEEEKTFGNNAASSLMEVYWN* back to topmRNA from alignment at chr19:71642..75840- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G00190.1 ID=NO19G00190.1|Name=NO19G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=4199bp|location=Sequence derived from alignment at chr19:71642..75840- (Nannochloropsis oceanica)
CGACAGATCAGGCACGCAGCGAGCCTTAGGGACTCGCCACTCTGTCTTGC
GCGACCATGCCTTCTCTTTCCAGGTAAGCTCATTCACACGAGACAGTCAG
CTATATATGTGTCTTGCCATGCAAGCTTCCAGAGCTGCGCCTCTATCTCT
CCTCCATTCGACTGCTGCACCAAACTTATACCAAATCTCCCCCCCCCACA
CCTCCCTCTATTTCTCCTACATTGTCGCAAATAGCTACCGAAAGCTGGCA
GGTATCTTCGCGCTACTCGTACTATCCCTCGCCAGCGTTGGGACCCGGGC
AATCGAAGTCGCGAGCTCCCCCGAGGAGATGGGTATGTAATGCTTCCTCC
CACAGTGTCCTCATTACCTCCTTCCCTCCCTCCTTCCTTCCTTGAGACAC
GCTCTCCTAACACACTCACCCCTTGCTCCTCGACTGGTTTCTCCACCTCT
TTTACTGCGAGCACGCGGCAATACACAGATTTCCTAAACATGATACTAGC
CCACCCGCTCTTCCATTCCACCCTCCTTAACTCCCTCCCTCCCTCCCTCC
CTCCCGCCCTCCCTCCCCTAGGCATGGCCACCTGGCGTCTCGACCAAATC
ACGCAGGATTTGCAGAAACTCGTTCATGATGATATAGTCCCTGGAGCCGC
TTTCATAGTCTTGCGTGGAGGAAAGTACGTGTACCACGGCGAGGTACGAA
TAGATAGCTAGGAGGGAGGAAGGGAGGGAGCGAGTGTGGGAGGTAGGGAT
GAAGAGGTGCACGAGCCCTTTTGTAAAATGTAGATCTACCAAGTTCTTCA
ATTTAGTCAATCTCTCCTCCCTTCTCTCCCTCCTTCCCTCGCTCCCAGGT
GGGCTACTCCGACAAGGAGACCATGACGGGCTTCCGAACTAACAGCATTT
GCCGCCTCCTCTCCATGAGCAAGCCCGTGGCGGCCGTCGCCATCATGAAG
CTGATCGAGGACGGCAAGTTGGCGATGGATGACCCCCTCTCCAAATACTT
GCCCGAGTGGAAAGGTGGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGCACGCGGGGGAGGGCACGGGGGGGGGCACGGGGGGATGCA
GCACACAGCTCACGATCCTTCCCTCCTTCTACCCTTCCTCCCCTCCCTAG
ACATGCGCGTAGTGAACCCCAACAAAGGCTATGATGGGTGGAACGCCGAC
GGCACCCCCTACTCGGAGCCCGCCCACCGACAAATCACGATCTTCGATCT
CTTGACACACACCTCGGGCATGTCCTATGGCTATGGATTTGGTAACCTCG
GAGGGATGGAGGGACGGAGGGAAGGAGGGACGGAGGCAAGAAAGGGAAGG
ATGGGGTGTCTCGGTGGTGGCAATGGAAGAGGTCTCACCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCGTCATGTGCAGGCAACGCCTCGATGG
TGGACTCGCTGTACCCCGCGAACTGGCGCGTGCCCATGATGAGAATGGAC
GAGTTTTCGCGCACTATTGCCAAGGTAGGGAGGAGAGGGAGGGAGGGAGG
GAGGGGGGGAGGGAGGGAGGGAGGGAGGGCAAGCATTGAACACAAACCAC
TCACATGTCTCCCTCTCCCCCTTCCCCCCCCCTTCCTCCTTCCCTCCCTC
TCTCAAGGTGCCCCTCCTGTTCGAGCCCGGGGAGCGATGGCGCTATTCGT
ACTCTTACGACGTGCTGGGGGTGGTGCTGATGAAGGTGAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTCACGACC
GAGAATATGTACTGTGACTTCTATGGCTTCATCTGGGAGCCATGGCCAAG
CGTGTGAGGAGAGAGGTAGTTGGGCGCGAGGAGAGAGCAGGTGCTAAGGC
GGTAAACGGCGAGACCGAAAGGACGTTAGTGAGTGAAATCTGGAACTTCA
CGCTGTTTCTCGCGCCCATCACCCACTTCCCCTCCCTCCCTCCGCCCCCT
AGGTCACTGGCATCTCCCCCGATGTTTGGATGCATGACAATATCTTCAAG
CCCCTGGGGATGGTCGACACCGCCTTTTCAGTGCCCATGTCCAAGATCAA
CCGCTACAGGTAGCCCACCCTCCACCCCTCCCTCCCTCCCTCCTTCCTTC
CCTTCCTTTCTTCCGCTGGGCGTGAATGGCTGTGAAAGAGAGTCCACTTT
CCATTACATTATTTCTTACGGATCCCACCTTCCTCCTTCCCTTGACGTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCTCAGCACCTC
CTACTCGGCCATGTCCAACGGCCGCCTGCAGTTCATTTTCAGGCCCCGCT
TGGACTACGTATCCTACGGACCTCCCAACTTCAAGAGCCTCGGCGGCGGC
ATCGTCAGCACGGCCAAGGCGCGTCCCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTTTCCCGTCTTTCCTCGCTTCCGTTTCGATCTAC
CTGTTTGTCATCAGAACGCGGGCGGGTGGGCGCATCACACATATATCTCA
CACGCATATCGCACACACTAATCACGCACATATGACACACACATATTTCA
CACAGATATTTCATACTAATCACGCACATATGACACTCATATCTCACACA
CATATTACACACAAATCAAATCACTTTCTCATCACATCCCTATAGGACTT
TGCTCGCTTCGGACAGATGCTCTTGAACGGTAAGAAGGGAGGGAGGGAGG
AAGGGGAAGGGCGAGGGAGGGAAGGACGGGAAGGAGGGTGTTTGGGCAAC
GTACATCCTCAAATTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CAGGCGGCACCCTGGATGGGGTCACCATCCTCTCCTCCGAGTCCGTCGAC
ACCATGTGGCGCAACTACCTGCCTGCCTCCCACCTACCCATGGACCTCAA
CGGCTGGGCAAGCGACGTCAACACCGGTACCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTCTCCCTCATTCCTTCTTACTTCATTTCCTCTCCCTTCC
ACTCGCGCTTCCTCCTCCCTCCCATCCGCCATTCATCCCGTGCTTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTAGGCTACGGC
TTGGGCTTTACCATTGCCGTCAATCACCCGGTGCTAGAAATTGAGAATTG
GGATGAATACAAAGGTAGGCCCTCCCTCCCTCCCTCCCTCCCCCCTTCCA
CCGATCCGTGGGCCGCCGTCAAGTAAAGCGATGAAGCTGAATCTGACACC
GCCACATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCT
TCCACCAGGCGACAAGCGCACGGGCTCTATCGGGTGGGGCGGCGGCGCGC
AGACAAATTTCGCTCTGAACGCCAACGACGACACGGTCATCATCTACATG
TCTCAGAAGATCGGTGGGCCTGATATCGCCTTTCAGGGGGCTGTCGTCAA
GGTACGTACACTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTC
CCTCCCTTCTTTCCTTGTTCCCACCTTTTCACGGTTGATGTTAATAATAA
AGAACTTAGGAATCCCTTCTCATCCCTCCCTCCTTCCCTCCCTCCCTCCC
CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCGCCAGGGCGTGAAC
GAGGCCATCATCGGACCGTCCCCTCGCGTGCAAGCCGGCGGCTTCTCCAC
CTACACGGGTACGTGCCCTCCCTCCCTCCCTTCCTCCCTCCTTTTTGTGC
ATTTCTTTCCTTCCTACCATCGTTCAAATATAGATAAACCCTCAGCAATG
CCTCCCATTCCTCCCTCCCTCCCCCTCCCCCTCCCTTCCTCCCTCCCTCC
CGCTCGCCTAACGCTGCACATCTGAATACTCCGTGGTATCCATCTCACGC
CCCCTCCCTCCCTCCCCCCCTTCCATCCTCCCTCTCAGGCGTCCCCTCGG
AGGAGGAGAAGACGTTCGGGAACAACGCGGCCTCCAGCCTCATGGAGGTA
TACTGGAATTAATACCTGCGGCACGGGACCCTGATGGGAGCGAGCACAGG
AGCATCAGCGAATGCAAGGGAAGGGGGGGGGCGAGCGAGGGAGGGAGGAA
GGGAGGGTTGAGGGGAGGAGGGATGGCTTTGGGGATTTGTATTGTAAAG back to topCoding sequence (CDS) from alignment at chr19:71642..75840- >NO19G00190.1 ID=NO19G00190.1|Name=NO19G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr19:71642..75840- (Nannochloropsis oceanica)
ATGCCTTCTCTTTCCAGCTACCGAAAGCTGGCAGGTATCTTCGCGCTACT
CGTACTATCCCTCGCCAGCGTTGGGACCCGGGCAATCGAAGTCGCGAGCT
CCCCCGAGGAGATGGGCATGGCCACCTGGCGTCTCGACCAAATCACGCAG
GATTTGCAGAAACTCGTTCATGATGATATAGTCCCTGGAGCCGCTTTCAT
AGTCTTGCGTGGAGGAAAGTACGTGTACCACGGCGAGGTGGGCTACTCCG
ACAAGGAGACCATGACGGGCTTCCGAACTAACAGCATTTGCCGCCTCCTC
TCCATGAGCAAGCCCGTGGCGGCCGTCGCCATCATGAAGCTGATCGAGGA
CGGCAAGTTGGCGATGGATGACCCCCTCTCCAAATACTTGCCCGAGTGGA
AAGACATGCGCGTAGTGAACCCCAACAAAGGCTATGATGGGTGGAACGCC
GACGGCACCCCCTACTCGGAGCCCGCCCACCGACAAATCACGATCTTCGA
TCTCTTGACACACACCTCGGGCATGTCCTATGGCTATGGATTTGGCAACG
CCTCGATGGTGGACTCGCTGTACCCCGCGAACTGGCGCGTGCCCATGATG
AGAATGGACGAGTTTTCGCGCACTATTGCCAAGGTGCCCCTCCTGTTCGA
GCCCGGGGAGCGATGGCGCTATTCGTACTCTTACGACGTGCTGGGGGTGG
TGCTGATGAAGGTCACTGGCATCTCCCCCGATGTTTGGATGCATGACAAT
ATCTTCAAGCCCCTGGGGATGGTCGACACCGCCTTTTCAGTGCCCATGTC
CAAGATCAACCGCTACAGCACCTCCTACTCGGCCATGTCCAACGGCCGCC
TGCAGTTCATTTTCAGGCCCCGCTTGGACTACGTATCCTACGGACCTCCC
AACTTCAAGAGCCTCGGCGGCGGCATCGTCAGCACGGCCAAGGACTTTGC
TCGCTTCGGACAGATGCTCTTGAACGGCGGCACCCTGGATGGGGTCACCA
TCCTCTCCTCCGAGTCCGTCGACACCATGTGGCGCAACTACCTGCCTGCC
TCCCACCTACCCATGGACCTCAACGGCTGGGCAAGCGACGTCAACACCGG
CTACGGCTTGGGCTTTACCATTGCCGTCAATCACCCGGTGCTAGAAATTG
AGAATTGGGATGAATACAAAGGCGACAAGCGCACGGGCTCTATCGGGTGG
GGCGGCGGCGCGCAGACAAATTTCGCTCTGAACGCCAACGACGACACGGT
CATCATCTACATGTCTCAGAAGATCGGTGGGCCTGATATCGCCTTTCAGG
GGGCTGTCGTCAAGGGCGTGAACGAGGCCATCATCGGACCGTCCCCTCGC
GTGCAAGCCGGCGGCTTCTCCACCTACACGGGCGTCCCCTCGGAGGAGGA
GAAGACGTTCGGGAACAACGCGGCCTCCAGCCTCATGGAGGTATACTGGA
ATTAA back to top
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