NO19G00050.1, NO19G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00050.1
Unique NameNO19G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length432
Alignment locationchr19:12497..12928 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:12497..12928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00050.1 vs.
Match: EWM23495.1 (transcription initiation factor iif subunit [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 2.800e-41
Identity = 100/144 (69.44%), Postives = 114/144 (79.17%), Query Frame = 0 
Query:    1 MLPTASLDYRAFAKKRQIQHHRKERRLELLV------GGGERGNGG-VRKMIDLNAPLDGGAGGGGGGGGGGEGGMKRARLDEAALRTTLFQCFKLKAAWAARELVQRLGQPEGSVKAALREIADYQSQGEHFGKYLLKPAWTG 138
            +LPTASLDYR FAKKRQIQHHRKERR+ELL       G G RG GG VRKMIDLNAPL   +G G G G GG  G +R RLD+A LRT LF+CF+LK+AW ARELV RLGQPEGSVK+ALREI+DYQ+QG++FGKYLLK  + G
Sbjct:   33 LLPTASLDYRVFAKKRQIQHHRKERRVELLRDDWGPGGEGGRGAGGAVRKMIDLNAPL---SGAGVGRGTGGRDGPQRVRLDQAGLRTALFKCFQLKSAWTARELVARLGQPEGSVKSALREISDYQTQGDYFGKYLLKTEFRG 173
The following BLAST results are available for this feature:
BLAST of NO19G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23495.12.800e-4169.44transcription initiation factor iif subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00050NO19G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00050.1NO19G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00050.1.cds1NO19G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00050.1 ID=NO19G00050.1|Name=NO19G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
ATGCTGCCCACAGCCTCCCTGGACTATCGGGCCTTTGCCAAGAAGAGGCA
GATACAGCATCATCGGAAGGAGAGGCGGCTGGAGCTGTTGGTTGGAGGAG
GAGAAAGAGGAAACGGAGGGGTACGAAAAATGATTGACCTTAACGCCCCT
CTCGATGGGGGGGCAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGAAGG
GGGGATGAAGAGAGCTAGGCTCGACGAAGCGGCGCTGCGGACGACCTTGT
TCCAGTGCTTCAAGCTCAAAGCGGCCTGGGCGGCGCGGGAGCTGGTGCAG
CGCTTGGGGCAGCCGGAGGGCAGTGTTAAGGCGGCGCTGCGGGAGATAGC
CGACTACCAGAGCCAGGGTGAGCATTTCGGGAAGTATCTACTCAAGCCGG
CCTGGACGGGGGCGGGTTTGAAAAAGGGGTAA
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protein sequence of NO19G00050.1

>NO19G00050.1-protein ID=NO19G00050.1-protein|Name=NO19G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MLPTASLDYRAFAKKRQIQHHRKERRLELLVGGGERGNGGVRKMIDLNAP
LDGGAGGGGGGGGGGEGGMKRARLDEAALRTTLFQCFKLKAAWAARELVQ
RLGQPEGSVKAALREIADYQSQGEHFGKYLLKPAWTGAGLKKG*
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mRNA from alignment at chr19:12497..12928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00050.1 ID=NO19G00050.1|Name=NO19G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at chr19:12497..12928+ (Nannochloropsis oceanica)
ATGCTGCCCACAGCCTCCCTGGACTATCGGGCCTTTGCCAAGAAGAGGCA
GATACAGCATCATCGGAAGGAGAGGCGGCTGGAGCTGTTGGTTGGAGGAG
GAGAAAGAGGAAACGGAGGGGTACGAAAAATGATTGACCTTAACGCCCCT
CTCGATGGGGGGGCAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGAAGG
GGGGATGAAGAGAGCTAGGCTCGACGAAGCGGCGCTGCGGACGACCTTGT
TCCAGTGCTTCAAGCTCAAAGCGGCCTGGGCGGCGCGGGAGCTGGTGCAG
CGCTTGGGGCAGCCGGAGGGCAGTGTTAAGGCGGCGCTGCGGGAGATAGC
CGACTACCAGAGCCAGGGTGAGCATTTCGGGAAGTATCTACTCAAGCCGG
CCTGGACGGGGGCGGGTTTGAAAAAGGGGTAA
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Coding sequence (CDS) from alignment at chr19:12497..12928+

>NO19G00050.1 ID=NO19G00050.1|Name=NO19G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr19:12497..12928+ (Nannochloropsis oceanica)
ATGCTGCCCACAGCCTCCCTGGACTATCGGGCCTTTGCCAAGAAGAGGCA
GATACAGCATCATCGGAAGGAGAGGCGGCTGGAGCTGTTGGTTGGAGGAG
GAGAAAGAGGAAACGGAGGGGTACGAAAAATGATTGACCTTAACGCCCCT
CTCGATGGGGGGGCAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGAAGG
GGGGATGAAGAGAGCTAGGCTCGACGAAGCGGCGCTGCGGACGACCTTGT
TCCAGTGCTTCAAGCTCAAAGCGGCCTGGGCGGCGCGGGAGCTGGTGCAG
CGCTTGGGGCAGCCGGAGGGCAGTGTTAAGGCGGCGCTGCGGGAGATAGC
CGACTACCAGAGCCAGGGTGAGCATTTCGGGAAGTATCTACTCAAGCCGG
CCTGGACGGGGGCGGGTTTGAAAAAGGGGTAA
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Synonyms
Publications