Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr18 genome chr18:888835..893563 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02700.1 vs.
Match: EWM23478.1 (cell division cycle protein [Nannochloropsis gaditana])
HSP 1 Score: 333.6 bits (854), Expect = 9.800e-88
Identity = 199/421 (47.27%), Postives = 254/421 (60.33%), Query Frame = 0
Query: 19 RRLVAALHACQVHVWAPLFRKWTLKSRSITLSSEFLSWLQTDGVILPPSVELSSTGHERTQHEDGEDDWEIEWQRRVEKESICSSYSSSSFPAFEAALTEAIAELGGAVVPKLNWSVPRDAAWVNGGTIKCETAGDVMLLLKSSDRMQNDLDRLEELQQIVTPSSALSSALQPVLTLRKWAYFHPSMHFRCFVRRSVLCAVSQREPSAFYPFLADEIPRLRTLLHTFFLLHITPILTTSLPSLFE-----------------EEGEKQV----GVTVCVDVYVDRQGRIWVLDLAPWGPPTDALLFAWGGTKAWEGGRLEVPLVADD-ESEVGAEDEGGEGIVVRVVDGEEVRVLPDPWASCRVPLDL--HGCVGLGGEAGPEGMLTGG--LDMEAIMRATMEERSRRGREVRSESSGMEE 414
R+ + AL ACQVH+W+PLFR WTLKSRSI LS + WLQ DG++LP V L+ST +Q ++ +I W+R ++ S S S AFE ALTEA+AELGG VPK+NWSVPRDAAW+NGGT+KCET GD+MLLLKSSDR+Q DL+RL L+ P + P LTLRKWA P M FRCF+ RS LCA+SQREPSAFYPFLA + RL TLL+ FF H T LFE EE + ++ G+ VCVDVYVDR+ ++WVLD+APWGPPTD+LLF W A + VP D + G G E ++ RV DG ++ + PDPW+SCRVPL++ H + + G LD++AI R T+ R +RG E S ++
Sbjct: 10 RQSLIALQACQVHLWSPLFRPWTLKSRSIPLSRPLVEWLQADGIVLPDHVTLTSTDGTSSQTYSDNENKDIGWRRGDDRHS---DSSPSFLYAFELALTEALAELGGQAVPKMNWSVPRDAAWINGGTLKCETPGDIMLLLKSSDRVQEDLNRL--LKTSAPPD--IPFRFSPTLTLRKWATLLPFMLFRCFIYRSSLCAISQREPSAFYPFLAAQESRLSTLLYDFF-QHEGREGLTGFQRLFEHGEGTMKDEVKGKGGLAEETDMEMGGKEGLAVCVDVYVDRRDKVWVLDVAPWGPPTDSLLFEWVEAYAEDDSGGHVPWKLDSMDGRQGISAGGKEHVIYRVGDG-DISIKPDPWSSCRVPLEMKEHMVEKVLTDTTNNGESEASEILDLQAIQRTTL--REQRGGEKADSSDSTDD 419
The following BLAST results are available for this feature:
BLAST of NO18G02700.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 9.80e-88 / Id = 47.27 Sequence EWM23478.1
Match Name E-value Identity Description
EWM23478.1 9.800e-88 47.27 cell division cycle protein [Nannochloropsis gadit... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO18G02700.1 ID=NO18G02700.1|Name=NO18G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=4312bp back to top protein sequence of NO18G02700.1
>NO18G02700.1-protein ID=NO18G02700.1-protein|Name=NO18G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp back to top mRNA from alignment at chr18:888835..893563+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02700.1 ID=NO18G02700.1|Name=NO18G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=4729bp|location=Sequence derived from alignment at chr18:888835..893563+ (Nannochloropsis oceanica)ATGA
CTGCATCGCCTCCATCCGAAACCGCTTGCTCCCCCGACCCTCCACCATCA
CGCCGATTGGTAGCAGCATTGCATGCCTGCCAGGTGCACGTGTGGGCACC
TTTGTTCCGGAAATGGACTTTGAAGTCGCGCTCGATAACATTATCCTCGG
AATTTCTTTCATGGCTGCAAACTGACGGTGTCATACTTCCACCCTCCGTT
GAGCTCAGCAGTACTGGCCACGAGCGCACCCAGCATGAAGACGGTGAAGA
CGACTGGGAGATTGAATGGCAAAGACGGGTCGAGAAGGAGAGTATCTGCT
CTTCGTATTCCTCGTCCTCTTTCCCCGCCTTTGAAGCAGCCCTGACAGAG
GCTATTGCGGAACTGGGCGGTGCCGTCGTGCCCAAGCTAAATTGGAGCGT
GCCCAGGGATGCAGCTTG GTAAAAAGGGGGGGAAGTTGGAGGAGGGATGG
GAGGGTGGGGAGGGAGGGTCTGTGGTAGGAGAGAATAGTAAGAGTGCCTT
GAGAAAGAGCTAGCACGTGAAAGAGAGGGGATACGGGGGGGCGGGAGGAA
GGAATATACAAGAGGCCATCTCTTCTTCGGTTTGTACTCGTCAGCCCTTA
CCGACGCCTTTTCCTCGCTCTTCTATGCTTCTCTCCCCCCTTATTCGTTT
CTTCAAAAGGGTTAACGGCGGCACAATAAAATGCGAGACGGCAGGTGATG
TGATGCTCCTGCTCAAGAGCTCGGACCGCATGCAGAACGATCTGGACCGC
CTGGAAGAGCTG GTAAGAGGGGTGTAAAGAGAAAGACGGAGAGAGAGGAA
AGATCACGGGAGAATGGAATGAAGGAGAGAGGGGGCTCTTGTGGTTCATT
GAAGATCCTTTGTTTCCTTTGTATCTCGTCATTGGCTCACTCTCACTTTG
GTCCCCTTGCGCCAACCCATATCACCACCGATTCTCAGCAACAAATCGTC
ACACCATCCTCCGCCCTCTCTTCCGCCCTCCAACCCGTTTTGACCCTTCG
TAAATGGGCGTATTTTCACCCATCCATGCACTTTCGCTGCTTTGTTCGTC
GCTCCGTCCTTTGCGCCGTCAGCCAGCGGGAGCCTTCCGCTTTTTATCCC
TTTCTCGCCGACGAGATCCCGCGCCTCCGCACCCTCCTCCATACCTTCTT
CCTCCTTCACATCACGCCCATTCTAACGACTTCCTTGCCATCACTGTTCG
AGGAAGAGGGAGAAAAACAGGTGGGTGTGACTGTGTGCGTGGACGTGTAC
GTGGACAGGCAGGGTAGGATCTGGGTGCTGGATCTAGCCCCCTGGGGCCC
ACCAACCGACGCCTTGCTATTTGCGTGGGGGGGGACGAAAGCATGGGAGG
GAGGCAGGTTAGAAGTGCCTTTGGTCGCGGACGACGAGTCCGAGGTCGGC
GCCGAGGACGAAGGGGGGGAGGGAATCGTGGTCCGAGTGGTGGATGGGGA
GGAGGTGCGTGTGCTTCCGGACCCTTGGGCCAGTTGCCGCGTGCCGCTTG
ATCTGCACGGATGTGTCGGATTAGGCGGCGAGGCAGGACCGGAAGGAATG
TTGACGGGAGGGTTGGATATGGAGGCTATTATGCGCGCGACGATGGAGGA
GAGAAGTCGGAGAGGGAGAGAGGTAAGGAGCGAGAGCAGTGGCATGGAAG
AAGAGGACAAAGAAGACGAAGAAGAACTAAGGGGGGGAAACAATGAGGAG
GAAGATGAAGACACGAGAAAGGAGAAGGAAGAGGAGGAGGAAGAGGAGCT
AGGGGAGGTAAGAGGAAAGTAA back to top Coding sequence (CDS) from alignment at chr18:888835..893563+
>NO18G02700.1 ID=NO18G02700.1|Name=NO18G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr18:888835..893563+ (Nannochloropsis oceanica) back to top