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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:865219..868926 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02660.2 vs.
Match: EWM27462.1 (putative abc transporter [Nannochloropsis gaditana]) HSP 1 Score: 385.6 bits (989), Expect = 2.900e-103 Identity = 258/595 (43.36%), Postives = 356/595 (59.83%), Query Frame = 0
Query: 23 RRAFGFLDQEHRLTPTLTVGESVLMAAVLRGGGRERGMEERQRRVGQVLRSLHMDHLVHARIGGDPHSSIHRGISGGEKRRVGVAMELMSNPSCLFLDEPTSGLDSYNATVLVDVLLSVARTRNIPILLSIHQPKQDTYAKLSSLILLHHGRCLYQGPALGKEMDLFLAERGLGGGGGGGREGGREADMVIEALFVERKGGKNGGKGMAIAVVGEEQEEEEEEEEEEKEG-------------KKEGKETRRL-------PSSSSPSSSLPPPPSSLPFSSSSSSSSSSSSSSSSTLHMGTAIPAPPLPASPRPTSPSSASYLVQVAVLSQRMLRDHLRRPWLIAAHMLANIYLGVLLGLMYLGSGRSTSGISAIQNRMGIFMLEMLFLAFTSVSALPLFWLERPLYAYEHANGYYGSGSYFTAKLLSDLIPLRIIPPVLLAGLTTLLVGFRGGLYFFNYTLALVLLSCVAAVINGIIGMLAQGIMGGILAATVLMLHLLLLTAIFVNFDTMQVAWLGRLRYVSFFQYGYEALVSNEMAGRKLTNLPVESGTAVLAQLGFRPERVDLNLTLLFVYLGAVMLLAYTVLARCVKEKR 598
++ GF+ Q L PTLTV ES++ + +LR R M E+ ++V VL L + H+ ++IG + + RGISGGEKRRV V MEL+++P L LDEPTSGLDSYNA +LV +L+ +A+ R +++ IHQP +AK+ L+L+ G+ ++ G G ++ + A G AD +I+ LF K + + +EE + +EG ++E R L P +S + +P SSSS+ S + P PP + + S+L++V+V+SQRM +D LR+P L+ H++A +Y G LLGL+Y GI+A+QNRMGIFMLE LFLAFTSVSALPLFWLERPLY +E +N YYG+ SYF AK+ SDLIPLR++PP L++ + LVG RGG++FF Y+L LVL++ +AA +N IIGML + IM GIL AT+ M+HL+LLT IFVNFDTM+VA+ LRYVSFF YGYEALV NE+AG+ +TN + GT VL LGF P+ + N +LF YL A + AY VL CVKE+R
Sbjct: 417 KQNIGFVAQHDMLLPTLTVMESLMFSGLLRLPQRLT-MAEKTQQVLNVLHELQLVHIADSKIGNE----VKRGISGGEKRRVSVGMELVTSPHALMLDEPTSGLDSYNADLLVQILMDLAQARKTAVVMVIHQPSATIFAKIDRLLLVCKGQTVFSGS--GHDVQPYFASI-----GQPIPPACNAADYLIDLLFTHNM-KKEEDLRLTLEAGRVAKEERGSVASKLEEGAMAPGAGAGADNPEEEDDAPRSLADVFAESPYASQTQREVEAQREPVPPLRQDSSSSTPRSRPFLLKKASSLRPLPPTQEEVKVEKEARVSWLLEVSVVSQRMFKDMLRKPTLVVTHLMACVYFGCLLGLLYFQI--EMDGIAAVQNRMGIFMLESLFLAFTSVSALPLFWLERPLYIHERSNRYYGTLSYFVAKVFSDLIPLRVLPPFLMSLTSHYLVGLRGGMHFFTYSLVLVLMTSIAATLNLIIGMLTRSIMSGILIATICMIHLILLTTIFVNFDTMKVAFFRGLRYVSFFNYGYEALVVNELAGQHITNFNIPEGTVVLRSLGFHPDFLYFNTFMLFAYLMAALGTAYLVLCFCVKERR 996
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02660.2 ID=NO18G02660.2|Name=NO18G02660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp GGGGGGAGGTTGCTTTGGTGATGCCGGGGGAGGAGGAGGCAGTGGAGCTC GGGAAGGAGGGAGGGGGAGAGCGGGGGAGGGAGGTGAGGAGGGCGTTTGG GTTCCTGGACCAGGAGCACCGGCTGACTCCGACGTTGACGGTGGGGGAGA GTGTGCTGATGGCGGCCGTGTTGAGGGGGGGAGGGAGGGAGAGAGGGATG GAGGAGAGGCAGCGACGGGTGGGGCAGGTGCTGAGGAGCTTGCACATGGA CCACTTGGTGCACGCTCGGATCGGCGGGGACCCCCACTCGTCGATCCACC GTGGCATCTCGGGAGGGGAGAAGCGGCGCGTGGGCGTGGCAATGGAGCTT ATGAGCAACCCCAGCTGCCTCTTTCTCGACGAGCCAACCAGTGGCCTGGA CTCTTACAACGCCACTGTGCTCGTGGACGTACTCCTCTCAGTGGCGCGCA CGAGAAACATCCCGATCCTCCTCTCCATCCACCAGCCCAAGCAGGATACG TACGCCAAGCTGTCCTCCCTCATCCTCCTCCACCACGGCCGCTGCCTCTA CCAGGGCCCGGCCCTCGGGAAAGAGATGGATTTGTTCTTGGCCGAAAGGG GGCTTGGGGGAGGGGGAGGGGGGGGGAGGGAGGGAGGGAGGGAGGCAGAC ATGGTTATTGAGGCGTTGTTTGTGGAGAGGAAGGGGGGAAAGAATGGCGG CAAGGGGATGGCGATTGCGGTGGTGGGAGAGGAACAAGAGGAAGAAGAGG AGGAGGAGGAAGAGGAGAAGGAAGGGAAAAAGGAAGGCAAAGAGACGCGT CGGCTCCCTTCCTCCTCCTCCCCCTCCTCCTCCCTCCCTCCTCCCCCTTC CTCCCTTCCCTTCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCACCCTACATATGGGCACAGCCATCCCAGCGCCCCCCCTC CCTGCCTCCCCCCGCCCTACCTCCCCCTCCTCGGCCTCCTACCTAGTGCA AGTTGCCGTCCTCTCTCAACGCATGCTCCGAGATCATTTGCGCCGGCCCT GGCTCATCGCCGCCCACATGCTGGCTAACATCTACCTGGGCGTCCTCCTC GGCCTGATGTACCTGGGCTCAGGGCGGTCCACCAGTGGCATCAGCGCCAT CCAGAACCGCATGGGCATCTTCATGCTCGAAATGCTCTTTCTGGCGTTCA CGTCCGTGAGCGCCCTCCCTCTCTTCTGGCTTGAGCGGCCCCTCTACGCC TACGAGCACGCCAATGGCTACTACGGCTCCGGCAGCTACTTCACTGCCAA GCTTCTCTCGGACCTGATCCCCCTCCGGATCATCCCTCCCGTCCTCCTCG CGGGCTTGACCACCCTTTTGGTCGGTTTCCGAGGGGGCTTGTACTTTTTC AACTACACCCTCGCGCTTGTCCTCCTGTCCTGTGTCGCCGCCGTCATCAA CGGCATCATTGGCATGCTCGCGCAAGGCATCATGGGCGGCATCCTGGCAG CCACCGTCCTCATGCTCCACCTCCTCCTCCTCACCGCCATCTTCGTCAAC TTCGACACCATGCAAGTGGCGTGGCTGGGTCGGCTGCGGTACGTGTCCTT CTTCCAGTACGGCTACGAGGCCCTCGTCAGCAACGAGATGGCGGGCCGCA AACTGACCAATCTTCCCGTGGAGAGCGGGACGGCCGTGCTTGCCCAGCTC GGCTTTCGTCCGGAGCGGGTGGACCTGAACCTGACGCTGCTCTTCGTGTA TTTGGGCGCAGTCATGCTCTTGGCCTACACAGTGCTGGCTCGGTGCGTGA AGGAGAAGCGGTAGAGAGACGTCGGGATGGGAGGATGGGAGGGAGGGAGA TGGAGAGCGGTTTGAGTGTGAGTGTAATGATTGAAGGAAGATAAATGTAG TGATATTCATGCAGTGGATCGATCGGAGGAGGAGCGATGGAAGGGGAGGA TGGAGAAAAAGAAGCTGAAGGAGGAGACGCAGAGGGGGGCGGGAACTGTC GCCTCCTCCTGGTGCCCGGCTGCGATTGGATCGAGGCCGAGGCGGGAGGG AGCGAGGGCGGGAAAGAGGGAGGGAGGGCGGGAGGGGGGAGGGAGGGAGG GGGTGGAATAAAAGGAGAGGGGAGAAAAGCGCGAAAGGGCTTTGGAGAGG GGATGGACTATTGCAGACCTCGTCCACACGGCAGGCATACAAAGTACGAA GCATTATCTGTGCCTGACGAGAAGAGATCAGCGTGCTAGCATGGAAGGAG AGTTATTGCACCGAGGTAGATCAAAAGAGACATTAAAGCGTGGGAAATTA ATTTAAAACATAACATAACAAAAAGCGAATCAAGTGTGAT back to topprotein sequence of NO18G02660.2 >NO18G02660.2-protein ID=NO18G02660.2-protein|Name=NO18G02660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp MPGEEEAVELGKEGGGERGREVRRAFGFLDQEHRLTPTLTVGESVLMAAV LRGGGRERGMEERQRRVGQVLRSLHMDHLVHARIGGDPHSSIHRGISGGE KRRVGVAMELMSNPSCLFLDEPTSGLDSYNATVLVDVLLSVARTRNIPIL LSIHQPKQDTYAKLSSLILLHHGRCLYQGPALGKEMDLFLAERGLGGGGG GGREGGREADMVIEALFVERKGGKNGGKGMAIAVVGEEQEEEEEEEEEEK EGKKEGKETRRLPSSSSPSSSLPPPPSSLPFSSSSSSSSSSSSSSSSTLH MGTAIPAPPLPASPRPTSPSSASYLVQVAVLSQRMLRDHLRRPWLIAAHM LANIYLGVLLGLMYLGSGRSTSGISAIQNRMGIFMLEMLFLAFTSVSALP LFWLERPLYAYEHANGYYGSGSYFTAKLLSDLIPLRIIPPVLLAGLTTLL VGFRGGLYFFNYTLALVLLSCVAAVINGIIGMLAQGIMGGILAATVLMLH LLLLTAIFVNFDTMQVAWLGRLRYVSFFQYGYEALVSNEMAGRKLTNLPV ESGTAVLAQLGFRPERVDLNLTLLFVYLGAVMLLAYTVLARCVKEKR* back to topmRNA from alignment at chr18:865219..868926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02660.2 ID=NO18G02660.2|Name=NO18G02660.2|organism=Nannochloropsis oceanica|type=mRNA|length=3708bp|location=Sequence derived from alignment at chr18:865219..868926- (Nannochloropsis oceanica) GGGGGGAGGTTGCTTTGGTGATGCCGGGGGAGGAGGAGGCAGTGGAGCTC
GGGAAGGAGGGAGGGGGAGAGCGGGGGAGGGAGGTGAGGAGGGCGTTTGG
GTTCCTGGACCAGGAGCACCGGCTGACTCCGACGTTGACGGTGGGGGAGA
GTGTGCTGATGGCGGCCGTGTTGAGGGGGGGAGGGAGGGAGAGAGGGATG
GAGGAGAGGCAGCGACGGGTGGGGCAGGTGCTGAGGAGCTTGCACATGGA
CCACTTGGTGCACGCTCGGATCGGTGGGTGAGGGGAAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAACCTCGTTGGTATTTAAAGTCGG
GCTTTGCCTACCACTCCCTAGAACATTCCTTCGAGCGAGTTCGGGCTAAC
CCCCTCCCTCCCTCCCTCCCTCCCTTCTGTCCAGGCGGGGACCCCCACTC
GTCGATCCACCGTGGCATCTCGGGAGGGGAGAAGCGGCGCGTGGGCGTGG
CAATGGAGCTTATGAGCAACCCCAGCTGCCTCTTTCTCGACGAGCCAACC
AGTGGCCTGGACTCTTACAACGCCAGTACGTTCCTTTCTCCCTTCCTCCC
TCTTTCCTTCCTCCTTTTTGATCCTGAACTGCTGTGCAGGTGCTGTGCAG
GCTCCCTTCCTCCCTCCTTCCCTCCGTCCCTCCCTCCCCTTGTACTTTTT
TTTAACCCCTCCTTCTCCTTCCCTTCTTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTAGCTGTGCTCGTGGACGTACTCCTCTCAGTGG
CGCGCACGAGAAACATCCCGATCCTCCTCTCCATCCACCAGCCCAAGCAG
GATACGTACGCCAAGCTGTCCTCCCTCATCCTCCTCCACCACGGCCGCTG
CCTCTACCAGGGCCCGGCCCTCGGGAAAGAGATGGATTTGTTCTTGGCCG
AAAGGGGGCTTGGGGGAGGGGGAGGGGGGGGGAGGGAGGGAGGGAGGGAG
GCAGACATGGTTATTGAGGCGTTGTTTGTGGAGAGGAAGGGGGGAAAGAA
TGGCGGCAAGGGGATGGCGATTGCGGTGGTGGGAGAGGAACAAGAGGAAG
AAGAGGAGGAGGAGGAAGAGGAGAAGGAAGGGAAAAAGGAAGGCAAAGAG
ACGCGTCGGCTCCCTTCCTCCTCCTCCCCCTCCTCCTCCCTCCCTCCTCC
CCCTTCCTCCCTTCCCTTCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCACCCTACATATGGGCACAGCCATCCCAGCGCCC
CCCCTCCCTGCCTCCCCCCGCCCTACCTCCCCCTCCTCGGCCTCCTACCT
AGTGCAAGTTGCCGTCCTCTCTCAACGCATGCTCCGAGATCATTTGCGCC
GGCCCTGGCTCATCGCCGCCCACATGCTGGCTAACATCTACCTGGGCGGT
GGGTCCCGATCGAGGGAGGGGGGAAGGAAGGGAGGAGGGGCTGTGTGGAT
CGGATGATCAAGCCCCTGGAAAGATCAGACTCTTACCCTTTTTTCCCTCC
CTCCCTCCCTCTAACCCTCCCTCCAGTCCTCCTCGGCCTGATGTACCTGG
GCTCAGGGCGGTCCACCAGTGGCATCAGCGCCATCCAGAACCGCATGGGC
ATCTTCATGCTCGAAATGCTCTTTCTGGCGTTCACGGTACGCTTCGCCCT
CCCTCTCTTCAACGGTTCCCAACGGTTCCCCTGAAGGGAAGCTTTTCCTC
TCCCTCCCTCCCTCCCCCACTCCCTTCCTCCCTCCCTCCTCTCTTCTGGC
TGGAGCGGCCTCTCTGCGCCTTCGGATGCAGCACACCCTCACCCACCCTC
CCTCCCTCCCTCCCTCCTTCGTCCCTCCTTCCCTTTTCCCACAGTCCGTG
AGCGCCCTCCCTCTCTTCTGGCTTGAGCGGCCCCTCTACGCCTACGAGCA
CGCCAATGGCTACTACGGCTCCGGCAGCTACTTCACTGCCAAGGTGAGGA
TCGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGACGGAGGGAGGGACG
GAGGGGGGTGAGATAGATACATGCACGTTTTTGACAACCACTCTTCTTGC
CCCCTCCCTCTCCCTCCCCCCCTCCCTCTTCTTCCCTTTCTCATATTTGC
TTAGCTTCTCTCGGACCTGATCCCCCTCCGGATCATCCCTCCCGTCCTCC
TCGCGGGCTTGACCACCCTTTTGGTCGGTTTCCGAGGGGGCTTGTACTTT
TTCAACTACACCCTCGCGCTTGTCCTCCTGTCCTGTGTCGCCGCCGTCAT
CAACGGCATCATTGGCATGCTCGGTGGGTGACGGGCCCCCTCTCTCCCTC
CTTCCCTTCCTTCCTTCCGACAGGTTTCTTTTTATATTCACCCTAACTCT
CTCTCCCTCCCTCCCTCGGCAGCGCAAGGCATCATGGGCGGCATCCTGGC
AGCCACCGTCCTCATGCTCCACCTCCTCCTCCTCACCGCCATCTTCGTCA
ACTTCGGTCAGCAAGCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCC
TCCCTCCCTCCTTCCCTGCCCTGAACCACCCTTCCCCCCCCCCGCCCCCT
CCAGACACCATGCAAGTGGCGTGGCTGGGTCGGCTGCGGTACGTGTCCTT
CTTCCAGTACGGCTACGAGGCCCTCGTCAGCAACGAGATGGCGGGTACGG
AAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCGCTTCATAACTCTAAATCATGTCCCCCAGGGAGCA
CTTGGATCTTGGCTCCGATCCTTTGGATTCCGTTCATATCCGCATTCATT
CCGTTCATATCCGCCTTCATTCCCCGCAGGCCGCAAACTGACCAATCTTC
CCGTGGAGAGCGGGACGGCCGTGCTTGCCCAGCTCGGTAGGTGCCGAAGC
ATGAGGGAGGACTGGAGCATTCGAGTGGCAGGTCAGGATTGGGCAACACG
ACGTACTCACTCCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGC
CTCCCTCCCTCGTGTGCAGGCTTTCGTCCGGAGCGGGTGGACCTGAACCT
GACGCTGCTCTTCGTGTATTTGGGCGCAGTCATGCTCTTGGCCTACACAG
TGCTGGCTCGGTGCGTGAAGGAGAAGCGGTAGAGAGACGTCGGGATGGGA
GGATGGGAGGGAGGGAGATGGAGAGCGGTTTGAGTGTGAGTGTAATGATT
GAAGGAAGATAAATGTAGTGATATTCATGCAGTGGATCGATCGGAGGAGG
AGCGATGGAAGGGGAGGATGGAGAAAAAGAAGCTGAAGGAGGAGACGCAG
AGGGGGGCGGGAACTGTCGCCTCCTCCTGGTGCCCGGCTGCGATTGGATC
GAGGCCGAGGCGGGAGGGAGCGAGGGCGGGAAAGAGGGAGGGAGGGCGGG
AGGGGGGAGGGAGGGAGGGGGTGGAATAAAAGGAGAGGGGAGAAAAGCGC
GAAAGGGCTTTGGAGAGGGGATGGACTATTGCAGACCTCGTCCACACGGC
AGGCATACAAAGTACGAAGCATTATCTGTGCCTGACGAGAAGAGATCAGC
GTGCTAGCATGGAAGGAGAGTTATTGCACCGAGGTAGATCAAAAGAGACA
TTAAAGCGTGGGAAATTAATTTAAAACATAACATAACAAAAAGCGAATCA
AGTGTGAT back to topCoding sequence (CDS) from alignment at chr18:865219..868926- >NO18G02660.2 ID=NO18G02660.2|Name=NO18G02660.2|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr18:865219..868926- (Nannochloropsis oceanica) ATGCCGGGGGAGGAGGAGGCAGTGGAGCTCGGGAAGGAGGGAGGGGGAGA GCGGGGGAGGGAGGTGAGGAGGGCGTTTGGGTTCCTGGACCAGGAGCACC GGCTGACTCCGACGTTGACGGTGGGGGAGAGTGTGCTGATGGCGGCCGTG TTGAGGGGGGGAGGGAGGGAGAGAGGGATGGAGGAGAGGCAGCGACGGGT GGGGCAGGTGCTGAGGAGCTTGCACATGGACCACTTGGTGCACGCTCGGA TCGGCGGGGACCCCCACTCGTCGATCCACCGTGGCATCTCGGGAGGGGAG AAGCGGCGCGTGGGCGTGGCAATGGAGCTTATGAGCAACCCCAGCTGCCT CTTTCTCGACGAGCCAACCAGTGGCCTGGACTCTTACAACGCCACTGTGC TCGTGGACGTACTCCTCTCAGTGGCGCGCACGAGAAACATCCCGATCCTC CTCTCCATCCACCAGCCCAAGCAGGATACGTACGCCAAGCTGTCCTCCCT CATCCTCCTCCACCACGGCCGCTGCCTCTACCAGGGCCCGGCCCTCGGGA AAGAGATGGATTTGTTCTTGGCCGAAAGGGGGCTTGGGGGAGGGGGAGGG GGGGGGAGGGAGGGAGGGAGGGAGGCAGACATGGTTATTGAGGCGTTGTT TGTGGAGAGGAAGGGGGGAAAGAATGGCGGCAAGGGGATGGCGATTGCGG TGGTGGGAGAGGAACAAGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGAAG GAAGGGAAAAAGGAAGGCAAAGAGACGCGTCGGCTCCCTTCCTCCTCCTC CCCCTCCTCCTCCCTCCCTCCTCCCCCTTCCTCCCTTCCCTTCTCCTCTT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCCTACAT ATGGGCACAGCCATCCCAGCGCCCCCCCTCCCTGCCTCCCCCCGCCCTAC CTCCCCCTCCTCGGCCTCCTACCTAGTGCAAGTTGCCGTCCTCTCTCAAC GCATGCTCCGAGATCATTTGCGCCGGCCCTGGCTCATCGCCGCCCACATG CTGGCTAACATCTACCTGGGCGTCCTCCTCGGCCTGATGTACCTGGGCTC AGGGCGGTCCACCAGTGGCATCAGCGCCATCCAGAACCGCATGGGCATCT TCATGCTCGAAATGCTCTTTCTGGCGTTCACGTCCGTGAGCGCCCTCCCT CTCTTCTGGCTTGAGCGGCCCCTCTACGCCTACGAGCACGCCAATGGCTA CTACGGCTCCGGCAGCTACTTCACTGCCAAGCTTCTCTCGGACCTGATCC CCCTCCGGATCATCCCTCCCGTCCTCCTCGCGGGCTTGACCACCCTTTTG GTCGGTTTCCGAGGGGGCTTGTACTTTTTCAACTACACCCTCGCGCTTGT CCTCCTGTCCTGTGTCGCCGCCGTCATCAACGGCATCATTGGCATGCTCG CGCAAGGCATCATGGGCGGCATCCTGGCAGCCACCGTCCTCATGCTCCAC CTCCTCCTCCTCACCGCCATCTTCGTCAACTTCGACACCATGCAAGTGGC GTGGCTGGGTCGGCTGCGGTACGTGTCCTTCTTCCAGTACGGCTACGAGG CCCTCGTCAGCAACGAGATGGCGGGCCGCAAACTGACCAATCTTCCCGTG GAGAGCGGGACGGCCGTGCTTGCCCAGCTCGGCTTTCGTCCGGAGCGGGT GGACCTGAACCTGACGCTGCTCTTCGTGTATTTGGGCGCAGTCATGCTCT TGGCCTACACAGTGCTGGCTCGGTGCGTGAAGGAGAAGCGGTAG back to top
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