NO18G02610.1, NO18G02610.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02610.1
Unique Name	NO18G02610.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2568
Alignment location	chr18:846000..849797 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:846000..849797 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G02610.1 vs.
Match: EWM23472.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.800e-65
Identity = 135/198 (68.18%), Postives = 160/198 (80.81%), Query Frame = 0

Query:    1 MSDELLQELEGHRASRAASSSS-----SLTVLQGDISALPSLLPSPQALGSFELAVCMGDTLTHLQSMAQVRTVVADAASFLKPGGVLVLHFRDLTYHLEGTDRFLPCQTDENNIFTCVLEYEDGDKR---EEQKEDRFVLINDLLYSRPDSSSAWTFKKSQFKKLEVPPEKVLEMMQAEGMETSLHPLAFGLVAAMG 191
            MS +LLQEL+GH+ + A   S      SLT+++GDI  L +LLPS  AL S +LAVCMGDTLTHLQS AQV+++V +A SFLKPGG L+LHFRDLT HLEGTDRFLPC+TDENNIFTCVLEYE+  +       KEDRFVLINDLLY+RPD+S+ WTFKKSQ+KKLEVPPE+VL+MMQ  GM+TS HPLAFG+VA MG
Sbjct:   89 MSADLLQELKGHKEALARKVSGQSPLPSLTLIEGDILRLRALLPS-DALASVDLAVCMGDTLTHLQSTAQVQSLVKNAVSFLKPGGTLILHFRDLTRHLEGTDRFLPCRTDENNIFTCVLEYEEAQETFLDGRDKEDRFVLINDLLYTRPDASAPWTFKKSQYKKLEVPPEEVLKMMQDAGMDTSFHPLAFGVVAVMG 285

The following BLAST results are available for this feature:

BLAST of NO18G02610.1 vs.

BLAST of NO18G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23472.1	1.800e-65	68.18	methyltransferase type 11 [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02610	NO18G02610	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02610.1	NO18G02610.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02610.1.cds1	NO18G02610.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02610.1.cds2	NO18G02610.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02610.1.cds3	NO18G02610.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02610.1.cds4	NO18G02610.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02610.1.cds5	NO18G02610.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02610.1.cds6	NO18G02610.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:846000..849797-
coding sequence from alignment at chr18:846000..849797-

mRNA sequence

>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp
TGACCGTCATGGTCGTCGTTTACTATTAAGTATTTGTGTGGTATGGAAAT
GGAAATCAAATGTTGGGAGTCTGGTGTGGAGGGGTCGCATGGAAGAACAG
ACTTTGTTGCGAGGCGCCAACTTTTGAATAAGGGCAGGAGATAACACCAG
AGCCTCGTCTCATTCCCGAACCAAAGGCAATTGAGATCCTTTCATATCCT
CCTTTGTGTCGTCTACTAGTGTACGGTAGTGTAAATGGGGCATGGTACAT
TTATCCGTGCGTCTGGTGTGGGCGGGAATGGACTGAAGCAGAGCAACATA
AGGAGGCAAGGGAAGGAAGGCGGTGGAAACCTCCTGCCCCACATTCGCGT
GTCCGCACCTAGAGCACGCGCATGTGCCCTGCTGAGCACGTAGAATGACA
CGACCGCAGATTGTCAGCCTAGGTTAGGGCGTGGGCTGGCGGTATGGCGT
TTGGGTTTTTGGGTGGTGTTGAGGAAACCCCTCTCGAATAAGTTGGCGAT
AATGTCATCCGACACCTGTTCCTCTGCACACGTGCACTCGACTACAACTT
GTTACTTTTTTTGAATTTAATGTGGCTGATCCCCTTATCCGATTTTACAC
ATTGACAGATGAGGTCAAAAGGACAGCAAGCAGCCGCAGCGAGGAGCCCC
GACAAACTTTGAAGAGAACCGACAATTCTTTCAGCTACACGGCTTGACAC
CGTCTACCCACGGGGCGAAGGCACTGGATCTCGGCTGCGGGAGCGGTTTC
CAGACCATTCCTTTGTTAGAGCTCGGCTACGATGTAACAGCGATTGACAT
GAGCGATGAGCTGTTGCAAGAGCTGGAGGGGCACCGAGCCTCCCGCGCCG
CCTCCTCCTCCTCCTCCCTGACAGTCCTCCAAGGCGACATCTCGGCATTG
CCCTCCCTCCTTCCCTCCCCTCAAGCACTCGGCTCCTTCGAACTAGCCGT
ATGCATGGGAGATACCCTTACTCACCTGCAGTCCATGGCCCAGGTGCGGA
CTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACTCGTC
TTGCACTTTCGAGACCTCACATATCACCTCGAGGGTACGGACCGTTTTTT
ACCGTGCCAGACGGACGAGAATAATATCTTCACGTGTGTATTAGAATACG
AAGATGGAGACAAGAGGGAGGAGCAGAAGGAGGACCGATTTGTCCTCATT
AACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTCAA
AAAGTCTCAGTTCAAGAAGCTGGAGGTGCCGCCCGAAAAGGTTCTGGAGA
TGATGCAGGCGGAGGGAATGGAAACGTCCCTTCACCCGTTGGCCTTCGGT
TTGGTGGCGGCTATGGGTGTATTGAAGGCAAAAAGCACGCAGCAGGGCTA
ACGAAAAAGGGGAAGAAATAAGTGGTAAAAGCGGGCGACAGCTTCTCATT
AGATTTATCCTCTGTACACTTTCATCCGCGCATTTGCTTCCACACACAAG
CCCTACGGTCAACACATCTGCCTGTACTGGAGAGAGTCGAGTGCATGGCA
TGCAACGTCACTCAGACTGGTCACTTTCAGAGCAAGCGGCAACAGGCGGG
GAAGCCCGAGGAGGTCCATGCCATCACCTCCTCCTCCTTCAGTGCCACGA
GTCGTCAGCCCCAGTCATCATCCATCCCGCGGCAGGAGATTCCGGCAACG
CCAGCAGCGGCAAGTGGCGGGGGAGCATCATCAAGGGCAGGCTGACCAGT
GATTGACTTAGTGGACGAGGACAATGATGACAGCGCGGCCGCTTACATCA
AGAGCTTCGCGTCCCTCTCCCAAGACGTTCAGACTCCATCGCATAGGCGC
TAACCCCGAGAGTACCTTGATGCGTGGGCATTAGGTCGACGCAGCTCATG
GGGCGCTGCGGCGCGGGCATCCACGCAGGTCTATGGTCGCTTTGTGAGCC
TGCTCAAGCTCGATATGGTGGTGATTGAGGACGAAAACAGCACGCAAGCA
ATCATGCAGATTCCCCTTGACCACCTGAAGGAGCTGCGTGGCCTCTCCCC
TTAGGGGACGAGGTGCGACTACTTGTTGGTGGAAGCACTTGGAGATCCCT
CTTCCCTAGTCGTCTGAGTACGTACGTGCCAGAGGCCCTAGGTTGGCGTC
GAGGTAGTAGATATGCCCCAGGCAGTCGCAGCCCACGGAGAGGAAATGCG
CGTTACAGCCCAGGCCTAAAGGGAGGGAGGGGGAAAGGGAGGGGAGGGAA
GAAAAGAGCGAGAGGTAGCGAGGATAGAGAGGTGACACCTAGGAGACAGG
TGGCAAGTGCACCTGTAGGCTGCGATAAGAAGTAAGGATGGAGGAAAGGA
AGGAAGGAGGGAGGGAGGAAAGGAAGGAAGGAGGGAGGGATGCACCGTCC
TCGCCGGCATCAAAGGCGTTCTTCTTGTAGTGGGGGTAGGCTGGGTCCCC
GTAAGGCACCACCATCTCGGCGAACGACAGCCGGTAGTGGATGGGACGCA
TGAGGCTGCCTGCCGCCTGGAGGTGGTCGGGTAGGGAGGGAGGGAGAGAG
GGAGCGAGGGAGGGAGGG

protein sequence of NO18G02610.1

>NO18G02610.1-protein ID=NO18G02610.1-protein|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MSDELLQELEGHRASRAASSSSSLTVLQGDISALPSLLPSPQALGSFELA
VCMGDTLTHLQSMAQVRTVVADAASFLKPGGVLVLHFRDLTYHLEGTDRF
LPCQTDENNIFTCVLEYEDGDKREEQKEDRFVLINDLLYSRPDSSSAWTF
KKSQFKKLEVPPEKVLEMMQAEGMETSLHPLAFGLVAAMGVLKAKSTQQG
*

mRNA from alignment at chr18:846000..849797-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3798bp|location=Sequence derived from alignment at chr18:846000..849797- (Nannochloropsis oceanica)
TGACCGTCATGGTCGTCGTTTACTATTAAGTATTTGTGTGGTATGGAAAT
GGAAATCAAATGTTGGGAGTCTGGTGTGGAGGGGTCGCATGGAAGAACAG
ACTTTGTTGCGAGGCGCCAACTTTTGAATAAGGGCAGGAGATAACACCAG
AGCCTCGTCTCATTCCCGAACCAAAGGCAATTGAGATCCTTTCATATCCT
CCTTTGTGTCGTCTACTAGTGTACGGTAGTGTAAATGGGGCATGGTACAT
TTATCCGTGCGTCTGGTGTGGGCGGGAATGGACTGAAGCAGAGCAACATA
AGGAGGCAAGGGAAGGAAGGCGGTGGAAACCTCCTGCCCCACATTCGCGT
GTCCGCACCTAGAGCACGCGCATGTGCCCTGCTGAGCACGTAGAATGACA
CGACCGCAGATTGTCAGCCTAGGTTAGGGCGTGGGCTGGCGGTATGGCGT
TTGGGTTTTTGGGTGGTGTTGAGGAAACCCCTCTCGAATAAGTTGGCGAT
AATGTCATCCGACACCTGTTCCTCTGCACACGTGCACTCGACTACAACTT
GTTACTTTTTTTGAATTTAATGTGGCTGATCCCCTTATCCGATTTTACAC
ATTGACAGATGAGGTCAAAAGGACAGCAAGCAGCCGCAGCGAGGAGCCCC
GACAAACTTTGAAGAGAACCGACAATTCTTTCAGCTACACGGCTTGACAC
CGTCTACCCACGGGGCGAAGGCACTGGATCTCGGCTGCGGGTGCGTTAGG
AAGGGGGACAGGAGGGAAGGCGGGAGGAAGGATGATGATGGTCAGTCGCA
TCCTCAAATCGGTCATGCACTCCCTGAATCAAACTTGTCCTTACGCATTG
AACTTCTCCTCCTCCCCTCCCCCCCCCCTCCCTCCCTCTCTCTCTCCCTC
TCTCCCTCTTGCCGTAGGAGCGGTTTCCAGACCATTCCTTTGTTAGAGCT
CGGCTACGATGTAACAGCGATTGACATGAGCGATGAGCTGTTGCAAGAGC
TGGAGGGGCACCGAGGTCAGGGAGGAAGGGAGGGAAGGAGGGGTAGCATC
GATGTGGTATAGACAGCCATTGACATGTAGCGTGTCGGAGAAGCATGACG
TGAAGGAAGGGAAGGGGAGAAGGGGGGGAAGGAATGAAGCAGTAGTCGTT
TGTTTGCTTATTTGCATGTAGACTATCACGCGTATACTCACGCACTGCCT
GCTAACAATGCTGCTCCTCAATCCCTCCCTTTGACTGATCTGCCCTCCAT
CCCCCCCTCCCCAGCCTCCCGCGCCGCCTCCTCCTCCTCCTCCCTGACAG
TCCTCCAAGGCGACATCTCGGCATTGCCCTCCCTCCTTCCCTCCCCTCAA
GCACTCGGCTCCTTCGAACTAGCCGTATGCATGGGAGATACCCTTACTCA
CCTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAAAAA
ACAAGGAAGGCTCCTTCTGTCAGTCTTCCGTTGCCGTCAATTTGGCGGTG
TGGTGAGTCCTGCAATTATCCTCTTCTCACCACCGCCCCTTCCCTCCTCC
CCTCCCTCCCCCCCTCCCTCCCTCCCTTGCCTCAGTCCATGGCCCAGGTG
CGGACTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACT
CGTCTGTACGTATGCACCAAGGGAGGGAGGGAGGGAGGGCGGGAGGGGCC
ATAGGGGCCCTGAAATGACTCCCTGCGACACTCCTTCGCTCTCTTCCCGC
ACGAGTCAGGTCCCTCTTTGTTTCGTTGCACCTGCCTGTCTCGTCCACCC
CTCTCTCCCTCCCTCTTCTCCTTCCTTCCCTCCTTTCTTTCCGTTGAAGA
GACCCACCACTCATTGCCTTGTCTAACAGAGTCTCTTCCCTCCCTTCCCT
CTTTCCCTCCCTCTCTCCCACCCACCATTCACCCCCAGTGCACTTTCGAG
ACCTCACATATCACCTCGAGGGTACGGACCGTTTTTTACCGTGCCAGACG
GACGAGAATAATATCTTCACGTGTGTATTAGAATACGAAGATGGAGACAA
GAGGGAGGAGCAGAAGGTGGGGAAGGAGAGAACGGAAGAGGAAGGAAGGA
GGAGGAATAGAAGGGGGTCAGTGTATAGCACTGATGGGTCTCCACGCACT
GTACGTCCACCAACCCGTCGCTTAATTTAATCTTTCTACCTTCCTTTTTT
ATATTTCTCCTTTCCCATCATCCGCCAGGAGGACCGATTTGTCCTCATTA
ACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTCAAA
AAGTCTCAGTTCAAGAAGCTGGAGGTACGAAATGGAAGAGTTGCAGCTTC
CCAATGCTTTTTTCCCCTCTTCACTTTCCTTTCTCCTCTTCTCTGCGTTT
TTTCCTCAAGAGTAAGGGGTGGGCGTGTAGCGAGAGAGTGACTGCACAGG
CCCTCAACAGCCGTCTCCCTTTCCTCCCTCGTCCCTCCCTCTCGCCATTC
CCAAGGTGCCGCCCGAAAAGGTTCTGGAGATGATGCAGGCGGAGGGAATG
GAAACGTCCCTTCACCCGTTGGCCTTCGGTTTGGTGGCGGCTATGGGTGT
ATTGAAGGCAAAAAGCACGCAGCAGGGCTAACGAAAAAGGGGAAGAAATA
AGTGGTAAAAGCGGGCGACAGCTTCTCATTAGATTTATCCTCTGTACACT
TTCATCCGCGCATTTGCTTCCACACACAAGCCCTACGGTCAACACATCTG
CCTGTACTGGAGAGAGTCGAGTGCATGGCATGCAACGTCACTCAGACTGG
TCACTTTCAGAGCAAGCGGCAACAGGCGGGGAAGCCCGAGGAGGTCCATG
CCATCACCTCCTCCTCCTTCAGTGCCACGAGTCGTCAGCCCCAGTCATCA
TCCATCCCGCGGCAGGAGATTCCGGCAACGCCAGCAGCGGCAAGTGGCGG
GGGAGCATCATCAAGGGCAGGCTGACCAGTGATTGACTTAGTGGACGAGG
ACAATGATGACAGCGCGGCCGCTTACATCAAGAGCTTCGCGTCCCTCTCC
CAAGACGTTCAGACTCCATCGCATAGGCGCTAACCCCGAGAGTACCTTGA
TGCGTGGGCATTAGGTCGACGCAGCTCATGGGGCGCTGCGGCGCGGGCAT
CCACGCAGGTCTATGGTCGCTTTGTGAGCCTGCTCAAGCTCGATATGGTG
GTGATTGAGGACGAAAACAGCACGCAAGCAATCATGCAGATTCCCCTTGA
CCACCTGAAGGAGCTGCGTGGCCTCTCCCCTTAGGGGACGAGGTGCGACT
ACTTGTTGGTGGAAGCACTTGGAGATCCCTCTTCCCTAGTCGTCTGAGTA
CGTACGTGCCAGAGGCCCTAGGTTGGCGTCGAGGTAGTAGATATGCCCCA
GGCAGTCGCAGCCCACGGAGAGGAAATGCGCGTTACAGCCCAGGCCTAAA
GGGAGGGAGGGGGAAAGGGAGGGGAGGGAAGAAAAGAGCGAGAGGTAGCG
AGGATAGAGAGGTGACACCTAGGAGACAGGTGGCAAGTGCACCTGTAGGC
TGCGATAAGAAGTAAGGATGGAGGAAAGGAAGGAAGGAGGGAGGGAGGAA
AGGAAGGAAGGAGGGAGGGATGCACCGTCCTCGCCGGCATCAAAGGCGTT
CTTCTTGTAGTGGGGGTAGGCTGGGTCCCCGTAAGGCACCACCATCTCGG
CGAACGACAGCCGGTAGTGGATGGGACGCATGAGGCTGCCTGCCGCCTGG
AGGTGGTCGGGTAGGGAGGGAGGGAGAGAGGGAGCGAGGGAGGGAGGG

Coding sequence (CDS) from alignment at chr18:846000..849797-

>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr18:846000..849797- (Nannochloropsis oceanica)
ATGAGCGATGAGCTGTTGCAAGAGCTGGAGGGGCACCGAGCCTCCCGCGC
CGCCTCCTCCTCCTCCTCCCTGACAGTCCTCCAAGGCGACATCTCGGCAT
TGCCCTCCCTCCTTCCCTCCCCTCAAGCACTCGGCTCCTTCGAACTAGCC
GTATGCATGGGAGATACCCTTACTCACCTGCAGTCCATGGCCCAGGTGCG
GACTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACTCG
TCTTGCACTTTCGAGACCTCACATATCACCTCGAGGGTACGGACCGTTTT
TTACCGTGCCAGACGGACGAGAATAATATCTTCACGTGTGTATTAGAATA
CGAAGATGGAGACAAGAGGGAGGAGCAGAAGGAGGACCGATTTGTCCTCA
TTAACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTC
AAAAAGTCTCAGTTCAAGAAGCTGGAGGTGCCGCCCGAAAAGGTTCTGGA
GATGATGCAGGCGGAGGGAATGGAAACGTCCCTTCACCCGTTGGCCTTCG
GTTTGGTGGCGGCTATGGGTGTATTGAAGGCAAAAAGCACGCAGCAGGGC
TAA

Synonyms

Publications