NO18G02610.1, NO18G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02610.1
Unique NameNO18G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2568
Alignment locationchr18:846000..849797 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:846000..849797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02610.1 vs.
Match: EWM23472.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.800e-65
Identity = 135/198 (68.18%), Postives = 160/198 (80.81%), Query Frame = 0 
Query:    1 MSDELLQELEGHRASRAASSSS-----SLTVLQGDISALPSLLPSPQALGSFELAVCMGDTLTHLQSMAQVRTVVADAASFLKPGGVLVLHFRDLTYHLEGTDRFLPCQTDENNIFTCVLEYEDGDKR---EEQKEDRFVLINDLLYSRPDSSSAWTFKKSQFKKLEVPPEKVLEMMQAEGMETSLHPLAFGLVAAMG 191
            MS +LLQEL+GH+ + A   S      SLT+++GDI  L +LLPS  AL S +LAVCMGDTLTHLQS AQV+++V +A SFLKPGG L+LHFRDLT HLEGTDRFLPC+TDENNIFTCVLEYE+  +       KEDRFVLINDLLY+RPD+S+ WTFKKSQ+KKLEVPPE+VL+MMQ  GM+TS HPLAFG+VA MG
Sbjct:   89 MSADLLQELKGHKEALARKVSGQSPLPSLTLIEGDILRLRALLPS-DALASVDLAVCMGDTLTHLQSTAQVQSLVKNAVSFLKPGGTLILHFRDLTRHLEGTDRFLPCRTDENNIFTCVLEYEEAQETFLDGRDKEDRFVLINDLLYTRPDASAPWTFKKSQYKKLEVPPEEVLKMMQDAGMDTSFHPLAFGVVAVMG 285
The following BLAST results are available for this feature:
BLAST of NO18G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400SequenceEWM23472.1
Match NameE-valueIdentityDescription
EWM23472.11.800e-6568.18methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02610NO18G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02610.1NO18G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02610.1.cds1NO18G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02610.1.cds2NO18G02610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02610.1.cds3NO18G02610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02610.1.cds4NO18G02610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02610.1.cds5NO18G02610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02610.1.cds6NO18G02610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp
TGACCGTCATGGTCGTCGTTTACTATTAAGTATTTGTGTGGTATGGAAAT
GGAAATCAAATGTTGGGAGTCTGGTGTGGAGGGGTCGCATGGAAGAACAG
ACTTTGTTGCGAGGCGCCAACTTTTGAATAAGGGCAGGAGATAACACCAG
AGCCTCGTCTCATTCCCGAACCAAAGGCAATTGAGATCCTTTCATATCCT
CCTTTGTGTCGTCTACTAGTGTACGGTAGTGTAAATGGGGCATGGTACAT
TTATCCGTGCGTCTGGTGTGGGCGGGAATGGACTGAAGCAGAGCAACATA
AGGAGGCAAGGGAAGGAAGGCGGTGGAAACCTCCTGCCCCACATTCGCGT
GTCCGCACCTAGAGCACGCGCATGTGCCCTGCTGAGCACGTAGAATGACA
CGACCGCAGATTGTCAGCCTAGGTTAGGGCGTGGGCTGGCGGTATGGCGT
TTGGGTTTTTGGGTGGTGTTGAGGAAACCCCTCTCGAATAAGTTGGCGAT
AATGTCATCCGACACCTGTTCCTCTGCACACGTGCACTCGACTACAACTT
GTTACTTTTTTTGAATTTAATGTGGCTGATCCCCTTATCCGATTTTACAC
ATTGACAGATGAGGTCAAAAGGACAGCAAGCAGCCGCAGCGAGGAGCCCC
GACAAACTTTGAAGAGAACCGACAATTCTTTCAGCTACACGGCTTGACAC
CGTCTACCCACGGGGCGAAGGCACTGGATCTCGGCTGCGGGAGCGGTTTC
CAGACCATTCCTTTGTTAGAGCTCGGCTACGATGTAACAGCGATTGACAT
GAGCGATGAGCTGTTGCAAGAGCTGGAGGGGCACCGAGCCTCCCGCGCCG
CCTCCTCCTCCTCCTCCCTGACAGTCCTCCAAGGCGACATCTCGGCATTG
CCCTCCCTCCTTCCCTCCCCTCAAGCACTCGGCTCCTTCGAACTAGCCGT
ATGCATGGGAGATACCCTTACTCACCTGCAGTCCATGGCCCAGGTGCGGA
CTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACTCGTC
TTGCACTTTCGAGACCTCACATATCACCTCGAGGGTACGGACCGTTTTTT
ACCGTGCCAGACGGACGAGAATAATATCTTCACGTGTGTATTAGAATACG
AAGATGGAGACAAGAGGGAGGAGCAGAAGGAGGACCGATTTGTCCTCATT
AACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTCAA
AAAGTCTCAGTTCAAGAAGCTGGAGGTGCCGCCCGAAAAGGTTCTGGAGA
TGATGCAGGCGGAGGGAATGGAAACGTCCCTTCACCCGTTGGCCTTCGGT
TTGGTGGCGGCTATGGGTGTATTGAAGGCAAAAAGCACGCAGCAGGGCTA
ACGAAAAAGGGGAAGAAATAAGTGGTAAAAGCGGGCGACAGCTTCTCATT
AGATTTATCCTCTGTACACTTTCATCCGCGCATTTGCTTCCACACACAAG
CCCTACGGTCAACACATCTGCCTGTACTGGAGAGAGTCGAGTGCATGGCA
TGCAACGTCACTCAGACTGGTCACTTTCAGAGCAAGCGGCAACAGGCGGG
GAAGCCCGAGGAGGTCCATGCCATCACCTCCTCCTCCTTCAGTGCCACGA
GTCGTCAGCCCCAGTCATCATCCATCCCGCGGCAGGAGATTCCGGCAACG
CCAGCAGCGGCAAGTGGCGGGGGAGCATCATCAAGGGCAGGCTGACCAGT
GATTGACTTAGTGGACGAGGACAATGATGACAGCGCGGCCGCTTACATCA
AGAGCTTCGCGTCCCTCTCCCAAGACGTTCAGACTCCATCGCATAGGCGC
TAACCCCGAGAGTACCTTGATGCGTGGGCATTAGGTCGACGCAGCTCATG
GGGCGCTGCGGCGCGGGCATCCACGCAGGTCTATGGTCGCTTTGTGAGCC
TGCTCAAGCTCGATATGGTGGTGATTGAGGACGAAAACAGCACGCAAGCA
ATCATGCAGATTCCCCTTGACCACCTGAAGGAGCTGCGTGGCCTCTCCCC
TTAGGGGACGAGGTGCGACTACTTGTTGGTGGAAGCACTTGGAGATCCCT
CTTCCCTAGTCGTCTGAGTACGTACGTGCCAGAGGCCCTAGGTTGGCGTC
GAGGTAGTAGATATGCCCCAGGCAGTCGCAGCCCACGGAGAGGAAATGCG
CGTTACAGCCCAGGCCTAAAGGGAGGGAGGGGGAAAGGGAGGGGAGGGAA
GAAAAGAGCGAGAGGTAGCGAGGATAGAGAGGTGACACCTAGGAGACAGG
TGGCAAGTGCACCTGTAGGCTGCGATAAGAAGTAAGGATGGAGGAAAGGA
AGGAAGGAGGGAGGGAGGAAAGGAAGGAAGGAGGGAGGGATGCACCGTCC
TCGCCGGCATCAAAGGCGTTCTTCTTGTAGTGGGGGTAGGCTGGGTCCCC
GTAAGGCACCACCATCTCGGCGAACGACAGCCGGTAGTGGATGGGACGCA
TGAGGCTGCCTGCCGCCTGGAGGTGGTCGGGTAGGGAGGGAGGGAGAGAG
GGAGCGAGGGAGGGAGGG
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protein sequence of NO18G02610.1

>NO18G02610.1-protein ID=NO18G02610.1-protein|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MSDELLQELEGHRASRAASSSSSLTVLQGDISALPSLLPSPQALGSFELA
VCMGDTLTHLQSMAQVRTVVADAASFLKPGGVLVLHFRDLTYHLEGTDRF
LPCQTDENNIFTCVLEYEDGDKREEQKEDRFVLINDLLYSRPDSSSAWTF
KKSQFKKLEVPPEKVLEMMQAEGMETSLHPLAFGLVAAMGVLKAKSTQQG
*
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mRNA from alignment at chr18:846000..849797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3798bp|location=Sequence derived from alignment at chr18:846000..849797- (Nannochloropsis oceanica)
TGACCGTCATGGTCGTCGTTTACTATTAAGTATTTGTGTGGTATGGAAAT
GGAAATCAAATGTTGGGAGTCTGGTGTGGAGGGGTCGCATGGAAGAACAG
ACTTTGTTGCGAGGCGCCAACTTTTGAATAAGGGCAGGAGATAACACCAG
AGCCTCGTCTCATTCCCGAACCAAAGGCAATTGAGATCCTTTCATATCCT
CCTTTGTGTCGTCTACTAGTGTACGGTAGTGTAAATGGGGCATGGTACAT
TTATCCGTGCGTCTGGTGTGGGCGGGAATGGACTGAAGCAGAGCAACATA
AGGAGGCAAGGGAAGGAAGGCGGTGGAAACCTCCTGCCCCACATTCGCGT
GTCCGCACCTAGAGCACGCGCATGTGCCCTGCTGAGCACGTAGAATGACA
CGACCGCAGATTGTCAGCCTAGGTTAGGGCGTGGGCTGGCGGTATGGCGT
TTGGGTTTTTGGGTGGTGTTGAGGAAACCCCTCTCGAATAAGTTGGCGAT
AATGTCATCCGACACCTGTTCCTCTGCACACGTGCACTCGACTACAACTT
GTTACTTTTTTTGAATTTAATGTGGCTGATCCCCTTATCCGATTTTACAC
ATTGACAGATGAGGTCAAAAGGACAGCAAGCAGCCGCAGCGAGGAGCCCC
GACAAACTTTGAAGAGAACCGACAATTCTTTCAGCTACACGGCTTGACAC
CGTCTACCCACGGGGCGAAGGCACTGGATCTCGGCTGCGGGTGCGTTAGG
AAGGGGGACAGGAGGGAAGGCGGGAGGAAGGATGATGATGGTCAGTCGCA
TCCTCAAATCGGTCATGCACTCCCTGAATCAAACTTGTCCTTACGCATTG
AACTTCTCCTCCTCCCCTCCCCCCCCCCTCCCTCCCTCTCTCTCTCCCTC
TCTCCCTCTTGCCGTAGGAGCGGTTTCCAGACCATTCCTTTGTTAGAGCT
CGGCTACGATGTAACAGCGATTGACATGAGCGATGAGCTGTTGCAAGAGC
TGGAGGGGCACCGAGGTCAGGGAGGAAGGGAGGGAAGGAGGGGTAGCATC
GATGTGGTATAGACAGCCATTGACATGTAGCGTGTCGGAGAAGCATGACG
TGAAGGAAGGGAAGGGGAGAAGGGGGGGAAGGAATGAAGCAGTAGTCGTT
TGTTTGCTTATTTGCATGTAGACTATCACGCGTATACTCACGCACTGCCT
GCTAACAATGCTGCTCCTCAATCCCTCCCTTTGACTGATCTGCCCTCCAT
CCCCCCCTCCCCAGCCTCCCGCGCCGCCTCCTCCTCCTCCTCCCTGACAG
TCCTCCAAGGCGACATCTCGGCATTGCCCTCCCTCCTTCCCTCCCCTCAA
GCACTCGGCTCCTTCGAACTAGCCGTATGCATGGGAGATACCCTTACTCA
CCTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAAAAA
ACAAGGAAGGCTCCTTCTGTCAGTCTTCCGTTGCCGTCAATTTGGCGGTG
TGGTGAGTCCTGCAATTATCCTCTTCTCACCACCGCCCCTTCCCTCCTCC
CCTCCCTCCCCCCCTCCCTCCCTCCCTTGCCTCAGTCCATGGCCCAGGTG
CGGACTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACT
CGTCTGTACGTATGCACCAAGGGAGGGAGGGAGGGAGGGCGGGAGGGGCC
ATAGGGGCCCTGAAATGACTCCCTGCGACACTCCTTCGCTCTCTTCCCGC
ACGAGTCAGGTCCCTCTTTGTTTCGTTGCACCTGCCTGTCTCGTCCACCC
CTCTCTCCCTCCCTCTTCTCCTTCCTTCCCTCCTTTCTTTCCGTTGAAGA
GACCCACCACTCATTGCCTTGTCTAACAGAGTCTCTTCCCTCCCTTCCCT
CTTTCCCTCCCTCTCTCCCACCCACCATTCACCCCCAGTGCACTTTCGAG
ACCTCACATATCACCTCGAGGGTACGGACCGTTTTTTACCGTGCCAGACG
GACGAGAATAATATCTTCACGTGTGTATTAGAATACGAAGATGGAGACAA
GAGGGAGGAGCAGAAGGTGGGGAAGGAGAGAACGGAAGAGGAAGGAAGGA
GGAGGAATAGAAGGGGGTCAGTGTATAGCACTGATGGGTCTCCACGCACT
GTACGTCCACCAACCCGTCGCTTAATTTAATCTTTCTACCTTCCTTTTTT
ATATTTCTCCTTTCCCATCATCCGCCAGGAGGACCGATTTGTCCTCATTA
ACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTCAAA
AAGTCTCAGTTCAAGAAGCTGGAGGTACGAAATGGAAGAGTTGCAGCTTC
CCAATGCTTTTTTCCCCTCTTCACTTTCCTTTCTCCTCTTCTCTGCGTTT
TTTCCTCAAGAGTAAGGGGTGGGCGTGTAGCGAGAGAGTGACTGCACAGG
CCCTCAACAGCCGTCTCCCTTTCCTCCCTCGTCCCTCCCTCTCGCCATTC
CCAAGGTGCCGCCCGAAAAGGTTCTGGAGATGATGCAGGCGGAGGGAATG
GAAACGTCCCTTCACCCGTTGGCCTTCGGTTTGGTGGCGGCTATGGGTGT
ATTGAAGGCAAAAAGCACGCAGCAGGGCTAACGAAAAAGGGGAAGAAATA
AGTGGTAAAAGCGGGCGACAGCTTCTCATTAGATTTATCCTCTGTACACT
TTCATCCGCGCATTTGCTTCCACACACAAGCCCTACGGTCAACACATCTG
CCTGTACTGGAGAGAGTCGAGTGCATGGCATGCAACGTCACTCAGACTGG
TCACTTTCAGAGCAAGCGGCAACAGGCGGGGAAGCCCGAGGAGGTCCATG
CCATCACCTCCTCCTCCTTCAGTGCCACGAGTCGTCAGCCCCAGTCATCA
TCCATCCCGCGGCAGGAGATTCCGGCAACGCCAGCAGCGGCAAGTGGCGG
GGGAGCATCATCAAGGGCAGGCTGACCAGTGATTGACTTAGTGGACGAGG
ACAATGATGACAGCGCGGCCGCTTACATCAAGAGCTTCGCGTCCCTCTCC
CAAGACGTTCAGACTCCATCGCATAGGCGCTAACCCCGAGAGTACCTTGA
TGCGTGGGCATTAGGTCGACGCAGCTCATGGGGCGCTGCGGCGCGGGCAT
CCACGCAGGTCTATGGTCGCTTTGTGAGCCTGCTCAAGCTCGATATGGTG
GTGATTGAGGACGAAAACAGCACGCAAGCAATCATGCAGATTCCCCTTGA
CCACCTGAAGGAGCTGCGTGGCCTCTCCCCTTAGGGGACGAGGTGCGACT
ACTTGTTGGTGGAAGCACTTGGAGATCCCTCTTCCCTAGTCGTCTGAGTA
CGTACGTGCCAGAGGCCCTAGGTTGGCGTCGAGGTAGTAGATATGCCCCA
GGCAGTCGCAGCCCACGGAGAGGAAATGCGCGTTACAGCCCAGGCCTAAA
GGGAGGGAGGGGGAAAGGGAGGGGAGGGAAGAAAAGAGCGAGAGGTAGCG
AGGATAGAGAGGTGACACCTAGGAGACAGGTGGCAAGTGCACCTGTAGGC
TGCGATAAGAAGTAAGGATGGAGGAAAGGAAGGAAGGAGGGAGGGAGGAA
AGGAAGGAAGGAGGGAGGGATGCACCGTCCTCGCCGGCATCAAAGGCGTT
CTTCTTGTAGTGGGGGTAGGCTGGGTCCCCGTAAGGCACCACCATCTCGG
CGAACGACAGCCGGTAGTGGATGGGACGCATGAGGCTGCCTGCCGCCTGG
AGGTGGTCGGGTAGGGAGGGAGGGAGAGAGGGAGCGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr18:846000..849797-

>NO18G02610.1 ID=NO18G02610.1|Name=NO18G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr18:846000..849797- (Nannochloropsis oceanica)
ATGAGCGATGAGCTGTTGCAAGAGCTGGAGGGGCACCGAGCCTCCCGCGC
CGCCTCCTCCTCCTCCTCCCTGACAGTCCTCCAAGGCGACATCTCGGCAT
TGCCCTCCCTCCTTCCCTCCCCTCAAGCACTCGGCTCCTTCGAACTAGCC
GTATGCATGGGAGATACCCTTACTCACCTGCAGTCCATGGCCCAGGTGCG
GACTGTGGTGGCCGACGCTGCCTCTTTCCTGAAGCCGGGCGGTGTACTCG
TCTTGCACTTTCGAGACCTCACATATCACCTCGAGGGTACGGACCGTTTT
TTACCGTGCCAGACGGACGAGAATAATATCTTCACGTGTGTATTAGAATA
CGAAGATGGAGACAAGAGGGAGGAGCAGAAGGAGGACCGATTTGTCCTCA
TTAACGACCTCCTCTACTCGAGGCCAGACTCTTCCTCGGCTTGGACGTTC
AAAAAGTCTCAGTTCAAGAAGCTGGAGGTGCCGCCCGAAAAGGTTCTGGA
GATGATGCAGGCGGAGGGAATGGAAACGTCCCTTCACCCGTTGGCCTTCG
GTTTGGTGGCGGCTATGGGTGTATTGAAGGCAAAAAGCACGCAGCAGGGC
TAA
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Synonyms
Publications