NO18G02570.2, NO18G02570.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02570.2
Unique NameNO18G02570.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2482
Alignment locationchr18:836911..839831 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:836911..839831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G02570.2 vs.
Match: XP_008900750.1 (hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETI53510.1 hypothetical protein F443_03567 [Phytophthora parasitica P1569]; ETL46781.1 hypothetical protein L916_03407 [Phytophthora parasitica]; ETL99903.1 hypothetical protein L917_03331 [Phytophthora parasitica]; ETN13674.1 hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETO82176.1 hypothetical protein F444_03640 [Phytophthora parasitica P1976]; ETP51299.1 hypothetical protein F442_03547 [Phytophthora parasitica P10297])

HSP 1 Score: 74.7 bits (182), Expect = 3.700e-10
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 0 
Query:   63 QASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLLNCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLANVAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHVFHYQ 205
            + + +   P     G+W+   C     C+ +CL+ +   C+ + Q++ R              LG+ T +C L   +       G A+V   ++    + QLR M R R  IPG    D CAS WC CCTLTQ+A HV  Y+
Sbjct:   29 EETKIDRDPSGILLGKWEAQLCGCCTHCVPNCLMATFCPCISVAQISAR--------------LGMTTYTCALLTFVLLFAFTCGFAHVVLFVW----IWQLRQMTRERFKIPGGCCEDYCASFWCPCCTLTQIATHVKSYK 152
The following BLAST results are available for this feature:
BLAST of NO18G02570.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008900750.13.700e-1030.28hypothetical protein PPTG_08422 [Phytophthora para... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02570NO18G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02570.2NO18G02570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02570.2.cds1NO18G02570.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02570.2.cds2NO18G02570.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02570.2.cds3NO18G02570.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02570.2.cds4NO18G02570.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02570.2.cds5NO18G02570.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02570.2.cds6NO18G02570.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp
CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA
GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA
TGACGCCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCG
TGTTTGTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCC
TCCCTCTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGG
CTTTTGCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCC
TCCTGAACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGC
ATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTC
TTGCGTGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGG
CGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGC
GGTATGGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTG
CTGCGCCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCC
ATGTCTTCCATTACCAAGGTAATTGAGGAAGTATTCCGTTCGTCAAGATT
GAAGGGATAAATGGCCAAATGGTCAAACAATTGAAAAAACTAAATTCACT
CCTTCCTCCAACCCAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAG
TGACTCCTTTGTGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACATG
CCCCTAATAAGACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAACTG
CAGTAAAGGAAAAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTCGG
ATCCTATACTTCATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTCTT
TGTTTCCATTCCCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCCCC
ACGAATGCCTTGAGATACAGGATGTCTGACAGTAGATCATCACCAGAAGA
ATAGAACTTCCCTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAACA
CATACAAACCGCCCATACAACTACACAGTGTCTCTCTCTTGCACCATACC
TTGCATTCCTGCACTTCCATGGTAAACTTAATATCAGCCACTCGGAATTC
ATACCCGGACAGCCAAACTCATCAGCACGCACAGTACCAGTGAACGATCT
CCCGGAACGTTTTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTTTC
TTAGAGTTTTTGATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAGAA
CGGCCCACAGACGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTACAG
GTCCTTAAGGTCAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGGGT
CCTTAAAAGAAAAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCACG
GACTGCGCCTGTAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCCTT
TGGCACCGTCCAGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATTGA
TTGTCGCGATGACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGATC
TCCACTTTGCTACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTCGT
GTTTGGCATCACCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAATG
TCATGGAAGGTGCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGCAA
CTTTTCAAGGAGGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACGCC
ACAAGGCTGCATATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTCCC
CCAAGTCGGTGGGGTCATTGTAGAATTCCATAAAGACATCCAGCAGATGC
TGCTCCGCTTCCGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTCCA
GCCTTGGCAGTCGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTCCG
AGATCGATACATCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCGCG
CCGTGAAGTCCAGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTGGT
AGCGTTGAGCGAGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTTCG
TCAAGCAGTCCTCCATGATAATGGCATCGTCCACATCAGCATCCTGATGC
TTGCAGTAGACCACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGAAT
CATGCTGCCTGCCTTATTTATCTGCGGCATGACCATATCTGCGTTAGGTG
GTAGGATGTTTTTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCGCG
GGGGTCTCGGCGTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCACC
AATATGATCCGATGACCGACCAGGTTTTACAC
back to top

protein sequence of NO18G02570.2

>NO18G02570.2-protein ID=NO18G02570.2-protein|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MTTLQREERNGLRDEEEAGGPMYLLPPDSECNDAEDDKLLSPENLLPAVF
VSVGPTSSNPFEQASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLL
NCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLAN
VAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHV
FHYQGN*
back to top

mRNA from alignment at chr18:836911..839831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2921bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica)
CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA
GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA
TGACGCCGAGGACGACAAGCTGGTAAGTGCTCAATTTGCATACACAAACC
CCAAATTCCTCGCTTACGAACATCACCGACCCATCCATTTAAACATTAAG
TTATCACCCGAAAATCTCCTGCCTGCCGTGTTTGTGTCGGTCGGTCCCAC
TAGTAGCAACCCATTTGAGCAGGCCTCCTCCCTCTCTCCCTCCCCGAAAA
GCCCACCGCGGGGTCGATGGAAGGACGGCTTTTGCGACTGGCACAAAGAT
TGCTTACATTCCTGTACGTATAAGAATTTTTTTTACCATTTGTATGTCTT
ACACGTACGTCAAACTTCGCACTATTATCAATTTACAATTCTCTGTGACT
TCCCTTATGACACAGGCCTGCTAGGATCCCTCCTGAACTGTGTCCTTCTT
GGTGAGACCTCTATCGGCCCAGCGCTCATCTCACTCTCTCTTCAATCAGT
CGACTCACTGATCGAACCCTTATCCTAGGCCAAGTGGCTCAGCGGATGAA
ATTCTGCATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGA
CTCTCTCTTGCGTGCTCTACGTAGCTCTGCCCAAGTAAGTCCAATAATGG
GGGGGAAATAGAGATGGATAAAATTAGAAATAAATGACGACATCCAAACC
TTTATAATGCGCTGAATCCCGTCGGTATGCTAGGAATGTCGGTCCCGGTG
GCCTGGCGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAA
CTCCGCGGTATGGTCCGATCACGGGATGCGATTCCGGTGTGTATAGAAAC
AATGAACCGTCACCTTTCTTTCCTTCCTTGGACCTATGGACCTCACTCGT
GCCGCGTATATTTATGTAGGGTGACCGATTCTGGGATTGCTGCGCCAGTC
TCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTCTTCCAT
TACCAAGGTAATTGAGGAAGTATTCCGTTCGTCAAGATTGAAGGGATAAA
TGGCCAAATGGTCAAACAATTGAAAAAACTAAATTCACTCCTTCCTCCAA
CCCAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAGTGACTCCTTTG
TGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACATGCCCCTAATAAG
ACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAACTGCAGTAAAGGAA
AAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTCGGATCCTATACTT
CATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTCTTTGTTTCCATTC
CCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCCCCACGAATGCCTT
GAGATACAGGATGTCTGACAGTAGATCATCACCAGAAGAATAGAACTTCC
CTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAACACATACAAACCG
CCCATACAACTACACAGTGTCTCTCTCTTGCACCATACCTTGCATTCCTG
CACTTCCATGGTAAACTTAATATCAGCCACTCGGAATTCATACCCGGACA
GCCAAACTCATCAGCACGCACAGTACCAGTGAACGATCTCCCGGAACGTT
TTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTTTCTTAGAGTTTTT
GATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAGAACGGCCCACAGA
CGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTACAGGTCCTTAAGGT
CAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGGGTCCTTAAAAGAA
AAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCACGGACTGCGCCTG
TAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCCTTTGGCACCGTCC
AGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATTGATTGTCGCGATG
ACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGATCTCCACTTTGCT
ACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTCGTGTTTGGCATCA
CCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAATGTCATGGAAGGT
GCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGCAACTTTTCAAGGA
GGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACGCCACAAGGCTGCA
TATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTCCCCCAAGTCGGTG
GGGTCATTGTAGAATTCCATAAAGACATCCAGCAGATGCTGCTCCGCTTC
CGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTCCAGCCTTGGCAGT
CGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTCCGAGATCGATACA
TCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCGCGCCGTGAAGTCC
AGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTGGTAGCGTTGAGCG
AGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTTCGTCAAGCAGTCC
TCCATGATAATGGCATCGTCCACATCAGCATCCTGATGCTTGCAGTAGAC
CACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGAATCATGCTGCCTG
CCTTATTTATCTGCGGCATGACCATATCTGCGTTAGGTGGTAGGATGTTT
TTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCGCGGGGGTCTCGGC
GTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCACCAATATGATCCG
ATGACCGACCAGGTTTTACAC
back to top

Coding sequence (CDS) from alignment at chr18:836911..839831-

>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica)
ATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAAGAGGA
GGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAATGACG
CCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCGTGTTT
GTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCCTCCCT
CTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGGCTTTT
GCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCCTCCTG
AACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGCATGAG
ATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTCTTGCG
TGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGGCGAAT
GTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGCGGTAT
GGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTGCTGCG
CCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTC
TTCCATTACCAAGGTAATTGA
back to top
Synonyms
Publications