NO18G02480.1, NO18G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02480.1
Unique NameNO18G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr18:804783..807336 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:804783..807336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02480.1 vs.
Match: CBJ31782.1 (putative dipeptidyl peptidase IV [Ectocarpus siliculosus])

HSP 1 Score: 367.9 bits (943), Expect = 3.200e-98
Identity = 170/254 (66.93%), Postives = 205/254 (80.71%), Query Frame = 0 
Query:    1 MHVTIYKPDPALHGPGPYPTVVSVYGGPHVQKVNRAWSLTVDMMAQRLRDLGILVLKCDNRGSARRGLAFESCLKNGFGSVEIRDQEDAVNLLISKGLTIPGKVGVYGWSYGGYMACMCLAKAPGTFRVGIAGAPVTSWDGYDTHYTERYMGSPKANCEAYAAASVLTHAANITGKLMLIHGQMDENVHFRHTARLLNALIAARKHYDLVLFPDGRHSLRKVEDRVYLEQRITDFLVQNLLRDSILHHPPKRPS 255
            +   +Y+PD  +HGPGPYPT+V+VYGGPHVQ V+R+W  TVDM AQRLRDLG LVLKCDNRGS RRGLAFE+ +K   G VEI DQED V+  + KGL  P +VG+YGWSYGGY   MCL KAP TFRVG++GAPVT+WDGYDTHYTERYMG+P  N + Y  +SVLTHA+ + GKLML+HG MDENVHFRHTARL+NALIAARK YDL++FPD RHS RK++DRVY+EQRI+D+ VQ+L++D     PP + S
Sbjct:  623 LFAAVYRPDVNVHGPGPYPTIVAVYGGPHVQWVSRSWGCTVDMRAQRLRDLGFLVLKCDNRGSFRRGLAFEAWVKWRMGGVEITDQEDCVHWAVKKGLADPARVGIYGWSYGGYATAMCLCKAPNTFRVGVSGAPVTAWDGYDTHYTERYMGTPMENPKGYTESSVLTHASKLEGKLMLVHGLMDENVHFRHTARLINALIAARKPYDLLIFPDERHSPRKLQDRVYMEQRISDYFVQHLVKD-----PPPQAS 871
The following BLAST results are available for this feature:
BLAST of NO18G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ31782.13.200e-9866.93putative dipeptidyl peptidase IV [Ectocarpus silic... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02480NO18G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02480.1NO18G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02480.1.cds1NO18G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds2NO18G02480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds3NO18G02480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds4NO18G02480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds5NO18G02480.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds6NO18G02480.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds7NO18G02480.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds8NO18G02480.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02480.1.cds9NO18G02480.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02480.1 ID=NO18G02480.1|Name=NO18G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGCATGTAACCATATACAAGCCCGATCCCGCCCTCCACGGTCCTGGTCC
TTACCCCACAGTCGTCTCCGTCTACGGCGGCCCACACGTGCAAAAAGTAA
ATCGCGCCTGGTCTCTAACCGTCGACATGATGGCCCAACGCCTTCGTGAC
TTGGGGATCCTCGTCCTTAAGTGCGACAACCGTGGCTCTGCTCGTCGAGG
CCTCGCTTTTGAGAGTTGTTTGAAAAACGGTTTCGGTTCCGTTGAAATCA
GAGACCAAGAAGACGCGGTCAATCTCCTGATTTCCAAGGGCCTGACCATC
CCGGGGAAGGTGGGTGTATACGGCTGGTCGTATGGAGGCTACATGGCATG
CATGTGCCTGGCCAAGGCTCCGGGTACCTTCCGCGTGGGCATCGCCGGCG
CTCCCGTTACCAGCTGGGACGGCTACGACACGCACTACACGGAGAGGTAT
ATGGGCTCGCCTAAAGCCAACTGCGAGGCATATGCCGCCGCCTCTGTCTT
AACTCATGCCGCCAACATAACAGGGAAGCTCATGCTGATACACGGTCAGA
TGGACGAGAATGTGCATTTCCGCCACACCGCACGGCTGCTTAATGCCCTT
ATAGCCGCTAGGAAGCACTATGACCTCGTCCTTTTCCCAGACGGCCGTCA
CAGCCTGCGGAAAGTCGAGGATCGAGTCTATTTGGAGCAGCGAATCACCG
ACTTCCTGGTCCAAAATCTCCTACGGGACTCCATCCTTCATCACCCGCCC
AAGCGTCCCTCTCTCCATGCCTCCTCGGCGAATAAGGAAGGGGGAGGCGG
TGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGCCTCGACCCCTCCTGTG
GTCAGTGCGCATCTTTGA
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protein sequence of NO18G02480.1

>NO18G02480.1-protein ID=NO18G02480.1-protein|Name=NO18G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MHVTIYKPDPALHGPGPYPTVVSVYGGPHVQKVNRAWSLTVDMMAQRLRD
LGILVLKCDNRGSARRGLAFESCLKNGFGSVEIRDQEDAVNLLISKGLTI
PGKVGVYGWSYGGYMACMCLAKAPGTFRVGIAGAPVTSWDGYDTHYTERY
MGSPKANCEAYAAASVLTHAANITGKLMLIHGQMDENVHFRHTARLLNAL
IAARKHYDLVLFPDGRHSLRKVEDRVYLEQRITDFLVQNLLRDSILHHPP
KRPSLHASSANKEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRASTPPV
VSAHL*
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mRNA from alignment at chr18:804783..807336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02480.1 ID=NO18G02480.1|Name=NO18G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp|location=Sequence derived from alignment at chr18:804783..807336+ (Nannochloropsis oceanica)
ATGCATGTAAGTAAGGGGCAAATCACAATAGCAACGCACACACACAAGAG
AAGGGGGAAGAAAGCAAGCGCACACAGAAAACAAGTAGAAAATCGAGGGT
AGCGCGTACTATTCTGTTTTTTACTTCGTAGAAGGGCGAGGGAGGGGTTG
GTTTTGTTTGGCTTTCGATGATATACTATGTTGTGTTGAGGACATAGAGG
CAGGGAAGGCCTTCTGTTCCAATTTTGAAGTGACACTTCATGTTTTCCAA
TTGATTCTTTGTGACATGCCAAGCAGCAAGACATTTTGACACTCTCCTTC
CTTTATAACGAAGATCTAAACTGAGTCCCGGTGTCCCCCACCAGAATTGC
CCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTCCCTCCCTCCCTCCCTAGCCATATACAAGCCCGATCCCGCCCT
CCACGGTCCTGGTCCTTACCCCACAGTCGTCTCCGTCTACGGCGGCCCAC
ACGTGCAAAAAGTACGTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCATCCCTCCCTCCCTCCATCCTCCCTTTCGTCTTGC
ACTTCCAGATGCTCACTACTCGCTTTCCCTCCCTCCCTCACTCCCTCCCT
CACTCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGGTAAATCGCGCCTGGTCTCTAACC
GTCGACATGATGGCCCAACGCCTTCGTGACTTGGGTAAGCCCTCCCTCCC
TCTCTCACTCCCTCCCTCCCTCCCTCGCCTCGTTCAGACATTTTTCTCCT
CAAACTTGATATTAGCGGCTGCTACCTCCCCCTCCCTCCCTCCCTCCCCC
TCGTCCTTGTTTGGGACAAGAGTGGCTTGCCTTTTCCCAATACCTTGCTC
ACCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTACTCCCTCA
GGGATCCTCGTCCTTAAGTGCGACAACCGTGGCTCTGCTCGTCGAGGCCT
CGCTTTTGAGAGTTGTTTGAAAAACGGTTTCGGTTCCGTTGAAATCAGAG
ACCAAGAAGACGCGGTCAATCTCCTGGTAAGCCAAGCAAGCCCTCCCTCC
CTCCCTCCCTACCTTCTTCGCTCGATCCATTTCTCCATTTCTCTGTGCCT
TCCTCCTCTCAACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTTCCTCAGATTTCCAAGGGCCTGACCATCCCGGGGAAGGTGGG
TGTATACGGCTGGTCGTATGGAGGCTACATGGCATGCATGTGCCTGGCCA
AGGTAGGGAGGGAGGGAGGGAGAGGGTGGCTCTTGCCATTAGGTCAATCG
TTCCACCGAAAGACTCACCCCTCTTCCTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCACCTCCCTTCCTTGCGAAGGCTCCGGGTACCTTCCGC
GTGGGCATCGCCGGCGCTCCCGTTACCAGCTGGGACGGCTACGACACGCA
CTACACGGAGAGGTACGGCTCTTTCCCTCTCTCCCTCCCTCTCTTCTTTA
TTCGACCTCCCCCTCTTCCCTCGCTCCCTCATTTTTCCTTCGATTTGCAT
CCCACCCTCCCACCCTCCCACCCTCCCTTCCTCACTTCCTCCTTCCCTCC
CTCCCTCCCTCCCAAGGTATATGGGCTCGCCTAAAGCCAACTGCGAGGCA
TATGCCGCCGCCTCTGTCTTAACTCATGCCGCCAACATAACAGGGAAGCT
CATGCTGATACACGGTCAGGTAGGAACCCTCCCTCCCCCCCTGCCTCCCT
CCCTCCCTGCCTCCTTTCTTCCCTCCCTCCTTCCCTCCCTCCTTTCCGGA
GACCGTCCGCGCACCTCTCCAAGAGATTTCGTATCCTCTTCACACGAGCC
TGCCTTCCCTCCCTGCCTCCTTCCCTCCCTTCCTAGATGGACGAGAATGT
GCATTTCCGCCACACCGCACGGCTGCTTAATGCCCTTATAGCCGCTAGGA
AGCACTATGACCTCGTCCTTTTCCCAGACGGCCGTCACAGCCTGCGGAAA
GTCGAGGATCGAGTCTATTTGGAGCAGCGGTACGTCCCTCCCTCCCTCCC
TCCATCCATCCATCCCTGTATTCTTCCCACCACACATTCCTTGTCCTTGT
GCACACGCCGCCCGGCCCATCTCTTTGATGTCCTACCTCACCCTTCCCTC
CCTCCCGCACTCCCTCTCTCCCTTGAAGAATCACCGACTTCCTGGTCCAA
AATCTCCTACGGGACTCCATCCTTCATCACCCGCCCAAGCGTCCCTCTCT
CCATGCCTCCTCGGCGAATAAGGAAGGGGGAGGCGGTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGAGGGCCTCGACCCCTCCTGTGGTCAGTGCGCATCT
TTGA
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Coding sequence (CDS) from alignment at chr18:804783..807336+

>NO18G02480.1 ID=NO18G02480.1|Name=NO18G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr18:804783..807336+ (Nannochloropsis oceanica)
ATGCATGTAACCATATACAAGCCCGATCCCGCCCTCCACGGTCCTGGTCC
TTACCCCACAGTCGTCTCCGTCTACGGCGGCCCACACGTGCAAAAAGTAA
ATCGCGCCTGGTCTCTAACCGTCGACATGATGGCCCAACGCCTTCGTGAC
TTGGGGATCCTCGTCCTTAAGTGCGACAACCGTGGCTCTGCTCGTCGAGG
CCTCGCTTTTGAGAGTTGTTTGAAAAACGGTTTCGGTTCCGTTGAAATCA
GAGACCAAGAAGACGCGGTCAATCTCCTGATTTCCAAGGGCCTGACCATC
CCGGGGAAGGTGGGTGTATACGGCTGGTCGTATGGAGGCTACATGGCATG
CATGTGCCTGGCCAAGGCTCCGGGTACCTTCCGCGTGGGCATCGCCGGCG
CTCCCGTTACCAGCTGGGACGGCTACGACACGCACTACACGGAGAGGTAT
ATGGGCTCGCCTAAAGCCAACTGCGAGGCATATGCCGCCGCCTCTGTCTT
AACTCATGCCGCCAACATAACAGGGAAGCTCATGCTGATACACGGTCAGA
TGGACGAGAATGTGCATTTCCGCCACACCGCACGGCTGCTTAATGCCCTT
ATAGCCGCTAGGAAGCACTATGACCTCGTCCTTTTCCCAGACGGCCGTCA
CAGCCTGCGGAAAGTCGAGGATCGAGTCTATTTGGAGCAGCGAATCACCG
ACTTCCTGGTCCAAAATCTCCTACGGGACTCCATCCTTCATCACCCGCCC
AAGCGTCCCTCTCTCCATGCCTCCTCGGCGAATAAGGAAGGGGGAGGCGG
TGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGCCTCGACCCCTCCTGTG
GTCAGTGCGCATCTTTGA
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Synonyms
Publications