NO18G02410.1, NO18G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02410.1
Unique NameNO18G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr18:783396..785849 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:783396..785849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G02410.1 vs.
Match: CBJ49193.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 214.9 bits (546), Expect = 3.400e-52
Identity = 132/291 (45.36%), Postives = 170/291 (58.42%), Query Frame = 0 
Query:   19 MSRFATLDSIKKAAAEKKKDSDEEAPPARPGGEDYYVGG-NGARGGGSGLSVVGPPG---GEG-GGGGSDFVQGIFQRARGGPSDLGNAAGEASGPSAGDAPPAGARSITMYRNGFTVDDGPFRALDDPANDSFLRDMARGVVPRELEAGVPPGQAVHVNLKDKRDEEYAAPAAPAYVAYSGEGKSLKSEGGGGSAAALCAGGGGGGHMPELDEGRPTTVLQIILASGKKFTHKFNLTHTLRHVQAVIASHGGADAPYRLLEGFPPRELTDFERTLEEAGLKNARLTQKLA 305
            M+ FATL+S+KK   E+KK            G  YY GG  GA  GGSGL+V+GPP    GEG GG G   VQ IF+RA            E  GP   D       +ITMY  GFTVDDGPFR LDDPAN  FL+D+A G+VP+ELEAG  PG+   V L DK++E+Y    AP YVA+ G+G+++ +      A     G       PE+D  +P+T LQI L  G++   + N+ HT+RH+QA+IA  G     Y L+ G+PP  L+D  +TLE+AGLK A +TQKLA
Sbjct:    1 MANFATLESLKKGDEEEKK------------GNAYYAGGARGAGRGGSGLNVMGPPPDDEGEGEGGNGDPHVQEIFRRA------------ETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDY---VAPPYVAFGGDGQTMGASTVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLKGASITQKLA 264
The following BLAST results are available for this feature:
BLAST of NO18G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ49193.13.400e-5245.36conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02410NO18G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02410.1NO18G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02410.1.cds1NO18G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds2NO18G02410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds3NO18G02410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds4NO18G02410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds5NO18G02410.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds6NO18G02410.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds7NO18G02410.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02410.1.cds8NO18G02410.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02410.1 ID=NO18G02410.1|Name=NO18G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
GTTGAAAAAGGCAGGAGAGGGTCTCGAGAAAGGGAGTGGGCCATGCTCGC
CCAGGCGCTCATCAGCGATGCCTCGTGAGGAAAGAGCATTTGCCACCGTC
TCCACGGGCATTGTTGGCAGCCACGCCGACAGGACATGTAGGTTGGTGAT
GATGGTGCTGAGTTGTGATAATGGTGAGGGTTGAAAGGCAAGCCTTGCTC
CTCCTGCCCCTCCCTCTCTCAACGCACGTTCAACCCGTCCTGAGGCTCAT
TCCATGCTGCGTGCTTCTGTGGCGTCTTTTCTAAGTTTTCATGCCTCCAC
CTCCCTCGCCCACGCATCCACACACAACACACAGAGCAGCAACCATGTCC
CGCTTCGCCACCCTCGACTCCATCAAGAAGGCGGCCGCGGAGAAGAAGAA
GGACAGCGATGAAGAAGCCCCCCCTGCAAGGCCCGGTGGGGAGGACTACT
ACGTCGGAGGCAACGGTGCGCGAGGCGGTGGCAGTGGCCTGTCAGTGGTA
GGCCCTCCGGGTGGCGAGGGAGGAGGAGGGGGCAGCGACTTTGTCCAGGG
AATCTTCCAACGTGCGCGTGGCGGCCCCTCCGACCTTGGCAATGCAGCCG
GAGAGGCAAGTGGACCATCTGCAGGAGACGCTCCTCCTGCAGGTGCCCGC
TCTATCACCATGTACCGCAACGGCTTCACCGTGGACGATGGGCCGTTCAG
AGCCCTTGATGACCCTGCCAACGACTCGTTCCTTCGTGACATGGCCCGTG
GGGTTGTTCCGCGGGAGTTGGAGGCCGGCGTGCCACCCGGTCAAGCCGTG
CACGTCAACCTTAAGGACAAGCGCGACGAAGAATACGCAGCGCCCGCGGC
ACCGGCCTACGTGGCTTACAGTGGAGAGGGAAAGAGTCTCAAGAGCGAGG
GAGGGGGGGGAAGCGCGGCAGCTCTGTGTGCGGGTGGAGGGGGAGGAGGG
CACATGCCGGAGCTGGATGAAGGGAGGCCTACGACTGTCTTGCAGATCAT
CCTGGCCTCGGGGAAGAAGTTTACGCACAAATTTAACCTGACGCACACTC
TCCGCCACGTCCAGGCCGTCATCGCAAGCCACGGTGGTGCTGACGCTCCC
TATCGCCTGCTGGAAGGCTTTCCACCTCGGGAATTAACAGACTTTGAACG
CACGTTGGAAGAGGCGGGATTAAAAAATGCCCGATTGACTCAGAAGCTGG
CGTAGAGGGAGGGAG
back to top

protein sequence of NO18G02410.1

>NO18G02410.1-protein ID=NO18G02410.1-protein|Name=NO18G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPPPPSPTHPHTTHRAATMSRFATLDSIKKAAAEKKKDSDEEAPPARPGG
EDYYVGGNGARGGGSGLSVVGPPGGEGGGGGSDFVQGIFQRARGGPSDLG
NAAGEASGPSAGDAPPAGARSITMYRNGFTVDDGPFRALDDPANDSFLRD
MARGVVPRELEAGVPPGQAVHVNLKDKRDEEYAAPAAPAYVAYSGEGKSL
KSEGGGGSAAALCAGGGGGGHMPELDEGRPTTVLQIILASGKKFTHKFNL
THTLRHVQAVIASHGGADAPYRLLEGFPPRELTDFERTLEEAGLKNARLT
QKLA*
back to top

mRNA from alignment at chr18:783396..785849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02410.1 ID=NO18G02410.1|Name=NO18G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp|location=Sequence derived from alignment at chr18:783396..785849+ (Nannochloropsis oceanica)
GTTGAAAAAGGCAGGAGAGGGTCTCGAGAAAGGGAGTGGGCCATGCTCGC
CCAGGCGCTCATCAGCGATGCCTCGTGAGGAAAGAGCATTTGCCACCGTC
TCCACGGGCATTGTTGGCAGCCACGCCGACAGGACATGTAGGTTGGTGAT
GATGGTGCTGAGTTGTGATAATGGTGAGGGTTGAAAGGCAAGCCTTGCTC
CTCCTGCCCCTCCCTCTCTCAACGCACGTTCAACCCGTCCTGAGGCTCAT
TCCATGCTGCGTGCTTCTGTGGCGTCTTTTCTAAGTTTTCATGCCTCCAC
CTCCCTCGCCCACGCATCCACACACAACACACAGAGCAGCAACCATGTCC
CGCTTCGCCACCCTCGACTCCATCAAGAAGGCGGCCGCGGAGAAGAAGAA
GTACGTCCTACCCCTCTCCCTCCCTCCCTCGCCATACTCCTATCCATCCC
GTCCTTAGGCTTCCACCCACTTGTCCATACCTCCATATTCCAAACACTCA
GGGACAGCGATGAAGAAGCCCCCCCTGCAAGGCCCGGTGGGGAGGACTAC
TACGTCGGAGGCAACGGGTGCGTGTGGTGCGGGTTCCTTCCTCCCTCCCT
CCTTTCTTCCTCCCTCCCTCATCCTCGTTTCCTCTGTTTCCCTGTCCCTT
CTTTCGTCTGAGACAGTGCGCGAGGCGGTGGCAGTGGCCTGTCAGTGGTA
GGCCCTCCGGGTGGCGAGGGAGGAGGAGGGGGCAGCGACTTTGTCCAGGG
AATCTTCCAACGTGCGCGGTACGTGGGTCGGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGAGAGGGAGATGGAGGAAGGGAGCTAGTGTGCACATAGGTGT
GGAACTGATGGCTTTCTGTTTTTGCGTCTCATTTTCATCTGTAACTCACA
TGTCTTATTCACGCTATTCCTCGTCGTCGTCGTCACGGTTATCCCTCCCA
CCTCATCCCAAGTGGCGGCCCCTCCGACCTTGGCAATGCAGCCGGAGAGG
CAAGTGGACCATCTGCAGGAGACGCTCCTCCTGCAGGTGCCCGCTCTATC
ACCATGTACCGCAACGGCTTCACCGTGGACGATGGGCCGTTCAGGTGAGG
GAGAGACGGAGGGACGGAGGGACCGAGGGAGAGGGGGAAGGACAGTCCAA
CTTTCCGTCCCGGGGACACTCACAGACTATCTCCCCCACTCTCTCCTTCG
CTATTGAGAAGCCTGAAGGACCGACCAACGATTCAGTGAAGACTCACGCG
CTCCCTCCCTTTCTCTTTCTTCCCCTCCTTCCTGCCCTCCCTCCCTCCCT
TCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCAGAGCCCTT
GATGACCCTGCCAACGACTCGTTCCTTCGTGACATGGCCCGTGGGGTTGT
TCCGCGGGAGTTGGAGGCCGGCGTGCCACCCGGTCAAGCCGTGCACGTCA
ACCTTAAGGTATGTTGGCCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTCCTTCCTCCCTTTGTCCACTTTTCCCAGTCAAGCCGTG
CACGTCAACCTCCGGGTAGGCTTAGACAGACCCTCCCTCCTTTCCTCGCT
CCCTCCCTCACTCCCTGCCTTTTGTCCTTCCTTTTTTCTTTCCTCTCTGT
CGTCACAGCTTCTTCTCAACTATCCCCCCCCCTCCCCTCCCTTCCTCAGG
ACAAGCGCGACGAAGAATACGCAGCGCCCGCGGCACCGGCCTACGTGGCT
TACAGTGGAGAGGGAAAGAGTCTCAAGAGCGAGGGAGGGGGGGGAAGCGC
GGCAGCTCTGTGTGCGGGTGGAGGGGGAGGAGGGCACATGCCGGAGCTGG
ATGAAGGGAGGCCTACGACTGTCTTGCAGGTAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGAAAGTGGAGGAGCTGAAC
AGTCAAATGTCTGAGCTACCGACTCTTATAGCATGCTTACCCTCCCACCC
TCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTACCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTAGATCATCCTGGCCTCGGGGAAGAAGTTTAC
GCACAAATTTAACCTGACGCACACTCTCCGCCACGTCCAGGCCGTCATCG
CAAGGTATACCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCTCCCTGCCCCTCTCCCTGCCTCCTTCCACCTGCGGGCTGGCTGG
TCAGCCTGACCTGACCTCTCTCCTCCATCCCTCCCTCCTTATCTCCTTCC
ATCCTCCCCTTCCTCAGCCACGGTGGTGCTGACGCTCCCTATCGCCTGCT
GGAAGGCTTTCCACCTCGGGAATTAACAGACTTTGAACGCACGTTGGAAG
AGGCGGGATTAAAAAATGCCCGATTGACTCAGAAGCTGGCGTAGAGGGAG
GGAG
back to top

Coding sequence (CDS) from alignment at chr18:783396..785849+

>NO18G02410.1 ID=NO18G02410.1|Name=NO18G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr18:783396..785849+ (Nannochloropsis oceanica)
ATGCCTCCACCTCCCTCGCCCACGCATCCACACACAACACACAGAGCAGC
AACCATGTCCCGCTTCGCCACCCTCGACTCCATCAAGAAGGCGGCCGCGG
AGAAGAAGAAGGACAGCGATGAAGAAGCCCCCCCTGCAAGGCCCGGTGGG
GAGGACTACTACGTCGGAGGCAACGGTGCGCGAGGCGGTGGCAGTGGCCT
GTCAGTGGTAGGCCCTCCGGGTGGCGAGGGAGGAGGAGGGGGCAGCGACT
TTGTCCAGGGAATCTTCCAACGTGCGCGTGGCGGCCCCTCCGACCTTGGC
AATGCAGCCGGAGAGGCAAGTGGACCATCTGCAGGAGACGCTCCTCCTGC
AGGTGCCCGCTCTATCACCATGTACCGCAACGGCTTCACCGTGGACGATG
GGCCGTTCAGAGCCCTTGATGACCCTGCCAACGACTCGTTCCTTCGTGAC
ATGGCCCGTGGGGTTGTTCCGCGGGAGTTGGAGGCCGGCGTGCCACCCGG
TCAAGCCGTGCACGTCAACCTTAAGGACAAGCGCGACGAAGAATACGCAG
CGCCCGCGGCACCGGCCTACGTGGCTTACAGTGGAGAGGGAAAGAGTCTC
AAGAGCGAGGGAGGGGGGGGAAGCGCGGCAGCTCTGTGTGCGGGTGGAGG
GGGAGGAGGGCACATGCCGGAGCTGGATGAAGGGAGGCCTACGACTGTCT
TGCAGATCATCCTGGCCTCGGGGAAGAAGTTTACGCACAAATTTAACCTG
ACGCACACTCTCCGCCACGTCCAGGCCGTCATCGCAAGCCACGGTGGTGC
TGACGCTCCCTATCGCCTGCTGGAAGGCTTTCCACCTCGGGAATTAACAG
ACTTTGAACGCACGTTGGAAGAGGCGGGATTAAAAAATGCCCGATTGACT
CAGAAGCTGGCGTAG
back to top
Synonyms
Publications